RNA–Protein interactions for RNA: ENST00000569240.5

CNOT1-216, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CNOT1, Length 7,660 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-216ENST00000569240 MYT1Q01538 1121 aa12.15□□□□□ -0.46
CNOT1-216ENST00000569240 PELP1Q8IZL8 1130 aaKnown RBP12.05□□□□□ -0.48
CNOT1-216ENST00000569240 ZEB1P37275 1124 aaPredicted RBP11.3□□□□□ -0.6
CNOT1-216ENST00000569240 CENPBP07199 599 aaPredicted RBP11.25□□□□□ -0.61
CNOT1-216ENST00000569240 TTBK1Q5TCY1 1321 aaPredicted RBP11.24□□□□□ -0.61
CNOT1-216ENST00000569240 CCER1Q8TC90 406 aaPredicted RBP11.18□□□□□ -0.62
CNOT1-216ENST00000569240 ERICH6Q7L0X2 663 aa10.97□□□□□ -0.65
CNOT1-216ENST00000569240 NISCHQ9Y2I1 1504 aa10.88□□□□□ -0.67
CNOT1-216ENST00000569240 YTHDC1Q96MU7 727 aaKnown RBP10.88□□□□□ -0.67
CNOT1-216ENST00000569240 HRCP23327 699 aa10.8□□□□□ -0.68
CNOT1-216ENST00000569240 SUPT5HO00267 1087 aaKnown RBP10.76□□□□□ -0.69
CNOT1-216ENST00000569240 NEFLP07196 543 aa10.72□□□□□ -0.69
CNOT1-216ENST00000569240 PCGF6Q9BYE7 350 aa10.72□□□□□ -0.69
CNOT1-216ENST00000569240 APLP2Q06481 763 aa10.63□□□□□ -0.71
CNOT1-216ENST00000569240 CLSPNQ9HAW4 1339 aa10.58□□□□□ -0.72
CNOT1-216ENST00000569240 DCAF8L2P0C7V8 631 aa10.58□□□□□ -0.72
CNOT1-216ENST00000569240 MYT1LQ9UL68 1186 aa10.57□□□□□ -0.72
CNOT1-216ENST00000569240 TRIM26Q12899 539 aaPredicted RBP10.56□□□□□ -0.72
CNOT1-216ENST00000569240 RTL5Q5HYW3 569 aaPredicted RBP10.4□□□□□ -0.74
CNOT1-216ENST00000569240 DAXXQ9UER7 740 aaPredicted RBP10.34□□□□□ -0.75
CNOT1-216ENST00000569240 GLIPR1L2Q4G1C9 344 aa10.31□□□□□ -0.76
CNOT1-216ENST00000569240 FAM9AQ8IZU1 332 aaPredicted RBP10.31□□□□□ -0.76
CNOT1-216ENST00000569240 SHROOM4Q9ULL8 1493 aa10.25□□□□□ -0.77
CNOT1-216ENST00000569240 ACIN1Q9UKV3 1341 aaKnown RBP10.23□□□□□ -0.77
CNOT1-216ENST00000569240 DIEXFQ68CQ4 756 aaKnown RBP10.21□□□□□ -0.77
CNOT1-216ENST00000569240 TRIM41Q8WV44 630 aa10.21□□□□□ -0.78
CNOT1-216ENST00000569240 GTF3C3Q9Y5Q9 886 aa10.16□□□□□ -0.78
CNOT1-216ENST00000569240 CDK11AQ9UQ88 783 aaPredicted RBP10.12□□□□□ -0.79
CNOT1-216ENST00000569240 ZNF316A6NFI3 1004 aaPredicted RBP10.07□□□□□ -0.8
CNOT1-216ENST00000569240 CHIC1Q5VXU3 224 aa10.04□□□□□ -0.8
CNOT1-216ENST00000569240 DCAF1Q9Y4B6 1507 aa10.01□□□□□ -0.81
CNOT1-216ENST00000569240 ANP32AP39687 249 aaKnown RBP9.99□□□□□ -0.81
CNOT1-216ENST00000569240 PPARGC1BQ86YN6 1023 aaKnown RBP9.96□□□□□ -0.81
CNOT1-216ENST00000569240 UBTFP17480 764 aaKnown RBP9.94□□□□□ -0.82
CNOT1-216ENST00000569240 ANP32EQ9BTT0 268 aa9.94□□□□□ -0.82
CNOT1-216ENST00000569240 EHMT2Q96KQ7 1210 aa9.9□□□□□ -0.82
CNOT1-216ENST00000569240 ANP32CO43423 234 aa9.86□□□□□ -0.83
CNOT1-216ENST00000569240 ANP32BQ92688 251 aaKnown RBP9.85□□□□□ -0.83
CNOT1-216ENST00000569240 SCAF1Q9H7N4 1312 aaKnown RBP9.82□□□□□ -0.84
CNOT1-216ENST00000569240 EIF5BO60841 1220 aaKnown RBP9.81□□□□□ -0.84
CNOT1-216ENST00000569240 NCLP19338 710 aaKnown RBP9.79□□□□□ -0.84
CNOT1-216ENST00000569240 ERICH6BQ5W0A0 696 aa9.78□□□□□ -0.84
CNOT1-216ENST00000569240 TNNT2P45379 298 aaPredicted RBP9.77□□□□□ -0.85
CNOT1-216ENST00000569240 BCL11AQ9H165 835 aa9.75□□□□□ -0.85
CNOT1-216ENST00000569240 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.75□□□□□ -0.85
CNOT1-216ENST00000569240 ZBTB47Q9UFB7 747 aaPredicted RBP9.74□□□□□ -0.85
CNOT1-216ENST00000569240 NEUROD1Q13562 356 aa9.74□□□□□ -0.85
CNOT1-216ENST00000569240 PPM1GO15355 546 aaPredicted RBP9.72□□□□□ -0.85
CNOT1-216ENST00000569240 DDRGK1Q96HY6 314 aa9.72□□□□□ -0.85
CNOT1-216ENST00000569240 TRIM44Q96DX7 344 aaPredicted RBP9.71□□□□□ -0.85
CNOT1-216ENST00000569240 LOC105371045A0A1W2PR82 267 aa9.69□□□□□ -0.86
CNOT1-216ENST00000569240 RANGAP1P46060 587 aaPredicted RBP9.67□□□□□ -0.86
CNOT1-216ENST00000569240 CCDC180Q9P1Z9 1646 aa9.67□□□□□ -0.86
CNOT1-216ENST00000569240 HNRNPUL2Q1KMD3 747 aaKnown RBP9.67□□□□□ -0.86
CNOT1-216ENST00000569240 UPF2Q9HAU5 1272 aaKnown RBP9.66□□□□□ -0.86
CNOT1-216ENST00000569240 BCANQ96GW7 911 aa9.65□□□□□ -0.86
CNOT1-216ENST00000569240 FKBP8Q14318 412 aa9.65□□□□□ -0.87
CNOT1-216ENST00000569240 ARID4BQ4LE39 1312 aaPredicted RBP9.61□□□□□ -0.87
CNOT1-216ENST00000569240 BECN1Q14457 450 aa9.56□□□□□ -0.88
CNOT1-216ENST00000569240 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.55□□□□□ -0.88
CNOT1-216ENST00000569240 ATP1B4Q9UN42 357 aaPredicted RBP9.54□□□□□ -0.88
CNOT1-216ENST00000569240 NEFMP07197 916 aa9.54□□□□□ -0.88
CNOT1-216ENST00000569240 L1TD1Q5T7N2 865 aaKnown RBP9.53□□□□□ -0.88
CNOT1-216ENST00000569240 CCDC136Q96JN2 1154 aa9.52□□□□□ -0.88
CNOT1-216ENST00000569240 NOP58Q9Y2X3 529 aaKnown RBP9.51□□□□□ -0.89
CNOT1-216ENST00000569240 CDK11BP21127 795 aaKnown RBP9.49□□□□□ -0.89
CNOT1-216ENST00000569240 USP35Q9P2H5 1018 aa9.49□□□□□ -0.89
CNOT1-216ENST00000569240 GOLGA6L22H0YM25 854 aa9.48□□□□□ -0.89
CNOT1-216ENST00000569240 RSPH6AQ9H0K4 717 aa9.48□□□□□ -0.89
CNOT1-216ENST00000569240 PPP4R2Q9NY27 417 aa9.48□□□□□ -0.89
CNOT1-216ENST00000569240 PTMSP20962 102 aa9.46□□□□□ -0.89
CNOT1-216ENST00000569240 NBR1Q14596 966 aa9.46□□□□□ -0.9
CNOT1-216ENST00000569240 HNRNPUQ00839 825 aaKnown RBP eCLIP9.45□□□□□ -0.9
CNOT1-216ENST00000569240 HSP90AA1P07900 732 aaKnown RBP9.44□□□□□ -0.9
CNOT1-216ENST00000569240 POLR3GLQ9BT43 218 aa9.44□□□□□ -0.9
CNOT1-216ENST00000569240 DEKP35659 375 aaKnown RBP9.44□□□□□ -0.9
CNOT1-216ENST00000569240 CANXP27824 592 aaKnown RBP9.44□□□□□ -0.9
CNOT1-216ENST00000569240 NPM2Q86SE8 214 aaKnown RBP9.44□□□□□ -0.9
CNOT1-216ENST00000569240 ITGAEP38570 1179 aa9.43□□□□□ -0.9
CNOT1-216ENST00000569240 TIMELESSQ9UNS1 1208 aa9.43□□□□□ -0.9
CNOT1-216ENST00000569240 SUPT16HQ9Y5B9 1047 aaKnown RBP9.42□□□□□ -0.9
CNOT1-216ENST00000569240 TONSLQ96HA7 1378 aa9.41□□□□□ -0.9
CNOT1-216ENST00000569240 MIER1Q8N108 512 aa9.41□□□□□ -0.9
CNOT1-216ENST00000569240 EEA1Q15075 1411 aa9.41□□□□□ -0.9
CNOT1-216ENST00000569240 ZNF326Q5BKZ1 582 aaKnown RBP9.4□□□□□ -0.9
CNOT1-216ENST00000569240 CCER2I3L3R5 266 aa9.4□□□□□ -0.91
CNOT1-216ENST00000569240 NAP1L5Q96NT1 182 aaPredicted RBP9.4□□□□□ -0.91
CNOT1-216ENST00000569240 CSRNP3Q8WYN3 585 aa9.36□□□□□ -0.91
CNOT1-216ENST00000569240 RBM19Q9Y4C8 960 aaKnown RBP9.35□□□□□ -0.91
CNOT1-216ENST00000569240 FAM50AQ14320 339 aaKnown RBP9.35□□□□□ -0.91
CNOT1-216ENST00000569240 CFAP44Q96MT7 982 aa9.35□□□□□ -0.91
CNOT1-216ENST00000569240 FANCIQ9NVI1 1328 aa9.35□□□□□ -0.91
CNOT1-216ENST00000569240 PNNQ9H307 717 aaKnown RBP9.34□□□□□ -0.91
CNOT1-216ENST00000569240 TRIM52Q96A61 297 aa9.32□□□□□ -0.92
CNOT1-216ENST00000569240 CHAF1AQ13111 956 aaPredicted RBP9.32□□□□□ -0.92
CNOT1-216ENST00000569240 DDX10Q13206 875 aaKnown RBP9.29□□□□□ -0.92
CNOT1-216ENST00000569240 TSHZ2Q9NRE2 1034 aa9.29□□□□□ -0.92
CNOT1-216ENST00000569240 NRDCO43847 1150 aa9.29□□□□□ -0.92
CNOT1-216ENST00000569240 MAP7D2Q96T17 732 aa9.28□□□□□ -0.92
CNOT1-216ENST00000569240 MTERF4Q7Z6M4 381 aaKnown RBP9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms