RNA–Protein interactions for RNA: ENST00000489430.1

MRPL55-230, Transcript of mitochondrial ribosomal protein L55, humanhuman

TSL 5

Gene MRPL55, Length 847 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPL55-230ENST00000489430 NISCHQ9Y2I1 1504 aa46.63■■■■■ 5.05
MRPL55-230ENST00000489430 CCDC180Q9P1Z9 1646 aa41.56■■■■■ 4.24
MRPL55-230ENST00000489430 ABCC9O60706 1549 aa40.88■■■■■ 4.14
MRPL55-230ENST00000489430 RB1CC1Q8TDY2 1594 aa39.29■■■■□ 3.88
MRPL55-230ENST00000489430 NACADO15069 1562 aa39.21■■■■□ 3.87
MRPL55-230ENST00000489430 DCAF8L2P0C7V8 631 aa39■■■■□ 3.83
MRPL55-230ENST00000489430 MYO15BQ96JP2 1530 aa38.99■■■■□ 3.83
MRPL55-230ENST00000489430 ZCCHC6Q5VYS8 1495 aaKnown RBP38.78■■■■□ 3.8
MRPL55-230ENST00000489430 DCAF1Q9Y4B6 1507 aa38.66■■■■□ 3.78
MRPL55-230ENST00000489430 UNC13AQ9UPW8 1703 aa38.18■■■■□ 3.7
MRPL55-230ENST00000489430 PABPN1Q86U42 306 aaKnown RBP eCLIP38.17■■■■□ 3.7
MRPL55-230ENST00000489430 BICRAQ9NZM4 1560 aa38.05■■■■□ 3.68
MRPL55-230ENST00000489430 SHROOM4Q9ULL8 1493 aa37.84■■■■□ 3.65
MRPL55-230ENST00000489430 DNAJC5BQ9UF47 199 aa37.83■■■■□ 3.65
MRPL55-230ENST00000489430 SCRIBQ14160 1630 aa37.79■■■■□ 3.64
MRPL55-230ENST00000489430 EIF4G1Q04637 1599 aaKnown RBP37.1■■■■□ 3.53
MRPL55-230ENST00000489430 CC2D2AQ9P2K1 1620 aa36.99■■■■□ 3.51
MRPL55-230ENST00000489430 CECR2Q9BXF3 1484 aa36.84■■■■□ 3.49
MRPL55-230ENST00000489430 NCAPD3P42695 1498 aa36.23■■■■□ 3.39
MRPL55-230ENST00000489430 SMARCA4P51532 1647 aa36.19■■■■□ 3.38
MRPL55-230ENST00000489430 BAZ1AQ9NRL2 1556 aaPredicted RBP36.18■■■■□ 3.38
MRPL55-230ENST00000489430 ATAD2BQ9ULI0 1458 aa36.13■■■■□ 3.37
MRPL55-230ENST00000489430 SMARCA2P51531 1590 aa36.1■■■■□ 3.37
MRPL55-230ENST00000489430 HMGXB3Q12766 1538 aa35.97■■■■□ 3.35
MRPL55-230ENST00000489430 PEG3Q9GZU2 1588 aa35.93■■■■□ 3.34
MRPL55-230ENST00000489430 MROH2BQ7Z745 1585 aa35.87■■■■□ 3.33
MRPL55-230ENST00000489430 BAZ1BQ9UIG0 1483 aaKnown RBP35.8■■■■□ 3.32
MRPL55-230ENST00000489430 RSF1Q96T23 1441 aaPredicted RBP35.41■■■■□ 3.26
MRPL55-230ENST00000489430 WIZO95785 1651 aa35.4■■■■□ 3.26
MRPL55-230ENST00000489430 ERCC6Q03468 1493 aa35.32■■■■□ 3.24
MRPL55-230ENST00000489430 NESP48681 1621 aa35.28■■■■□ 3.24
MRPL55-230ENST00000489430 LAMC3Q9Y6N6 1575 aa35.25■■■■□ 3.23
MRPL55-230ENST00000489430 CUX2O14529 1486 aa35.14■■■■□ 3.22
MRPL55-230ENST00000489430 CADPSQ9ULU8 1353 aa35.13■■■■□ 3.21
MRPL55-230ENST00000489430 TOP2AP11388 1531 aaKnown RBP35.11■■■■□ 3.21
MRPL55-230ENST00000489430 PDS5BQ9NTI5 1447 aa35.09■■■■□ 3.21
MRPL55-230ENST00000489430 CFTRP13569 1480 aa34.85■■■■□ 3.17
MRPL55-230ENST00000489430 THOC2Q8NI27 1593 aaKnown RBP34.83■■■■□ 3.17
MRPL55-230ENST00000489430 KIF21AQ7Z4S6 1674 aa34.78■■■■□ 3.16
MRPL55-230ENST00000489430 CCDC88BA6NC98 1476 aa34.7■■■■□ 3.15
MRPL55-230ENST00000489430 MRC2Q9UBG0 1479 aa34.68■■■■□ 3.14
MRPL55-230ENST00000489430 FANCD2Q9BXW9 1451 aa34.67■■■■□ 3.14
MRPL55-230ENST00000489430 CEP164Q9UPV0 1460 aa34.66■■■■□ 3.14
MRPL55-230ENST00000489430 WDR62O43379 1518 aa34.57■■■■□ 3.12
MRPL55-230ENST00000489430 DNAJC5Q9H3Z4 198 aa34.41■■■■□ 3.1
MRPL55-230ENST00000489430 PRDM2Q13029 1718 aa34.38■■■■□ 3.09
MRPL55-230ENST00000489430 URB2Q14146 1524 aaKnown RBP34.3■■■■□ 3.08
MRPL55-230ENST00000489430 SUPT5HO00267 1087 aaKnown RBP34.2■■■■□ 3.07
MRPL55-230ENST00000489430 ABCC8Q09428 1581 aa34.16■■■■□ 3.06
MRPL55-230ENST00000489430 TOPBP1Q92547 1522 aa34.07■■■■□ 3.04
MRPL55-230ENST00000489430 DNMBPQ6XZF7 1577 aa34■■■■□ 3.03
MRPL55-230ENST00000489430 IFT140Q96RY7 1462 aa33.99■■■■□ 3.03
MRPL55-230ENST00000489430 POLA1P09884 1462 aaPredicted RBP33.76■■■■□ 3
MRPL55-230ENST00000489430 ZNF608Q9ULD9 1512 aaPredicted RBP33.76■■■■□ 3
MRPL55-230ENST00000489430 TARBP1Q13395 1621 aaKnown RBP33.69■■■□□ 2.98
MRPL55-230ENST00000489430 CUX1P39880 1505 aa33.67■■■□□ 2.98
MRPL55-230ENST00000489430 SOGA1O94964 1423 aa33.65■■■□□ 2.98
MRPL55-230ENST00000489430 OSCARQ8IYS5 282 aa33.64■■■□□ 2.98
MRPL55-230ENST00000489430 FGD5Q6ZNL6 1462 aa33.62■■■□□ 2.97
MRPL55-230ENST00000489430 EIF4G3O43432 1585 aaKnown RBP33.6■■■□□ 2.97
MRPL55-230ENST00000489430 RAD54L2Q9Y4B4 1467 aa33.57■■■□□ 2.97
MRPL55-230ENST00000489430 AQRO60306 1485 aaKnown RBP eCLIP33.56■■■□□ 2.96
MRPL55-230ENST00000489430 WDR97A6NE52 1622 aa33.53■■■□□ 2.96
MRPL55-230ENST00000489430 TDRD9Q8NDG6 1382 aaKnown RBP33.46■■■□□ 2.95
MRPL55-230ENST00000489430 WRNQ14191 1432 aaPredicted RBP eCLIP33.41■■■□□ 2.94
MRPL55-230ENST00000489430 ABCA10Q8WWZ4 1543 aa33.34■■■□□ 2.93
MRPL55-230ENST00000489430 TOP2BQ02880 1626 aa33.33■■■□□ 2.93
MRPL55-230ENST00000489430 GRIN2BQ13224 1484 aa33.31■■■□□ 2.92
MRPL55-230ENST00000489430 BIVM-ERCC5R4GMW8 1640 aa33.29■■■□□ 2.92
MRPL55-230ENST00000489430 MAGI1Q96QZ7 1491 aaPredicted RBP33.27■■■□□ 2.92
MRPL55-230ENST00000489430 GAPVD1Q14C86 1478 aa33.25■■■□□ 2.91
MRPL55-230ENST00000489430 SYNJ1O43426 1573 aa33.24■■■□□ 2.91
MRPL55-230ENST00000489430 SNAPC4Q5SXM2 1469 aa33.24■■■□□ 2.91
MRPL55-230ENST00000489430 FBLN2P98095 1184 aa33.2■■■□□ 2.91
MRPL55-230ENST00000489430 ABCA5Q8WWZ7 1642 aa33.17■■■□□ 2.9
MRPL55-230ENST00000489430 CHD1O14646 1710 aa33.15■■■□□ 2.9
MRPL55-230ENST00000489430 CHMP7Q8WUX9 453 aaPredicted RBP33.14■■■□□ 2.9
MRPL55-230ENST00000489430 SYNJ2O15056 1496 aa33.12■■■□□ 2.89
MRPL55-230ENST00000489430 PBRM1Q86U86 1689 aa33.05■■■□□ 2.88
MRPL55-230ENST00000489430 TRIM41Q8WV44 630 aa33.01■■■□□ 2.87
MRPL55-230ENST00000489430 ARHGEF11O15085 1522 aa33■■■□□ 2.87
MRPL55-230ENST00000489430 RIMBP3CA6NJZ7 1639 aa32.98■■■□□ 2.87
MRPL55-230ENST00000489430 RIMBP3BA6NNM3 1639 aa32.98■■■□□ 2.87
MRPL55-230ENST00000489430 RIMBP3Q9UFD9 1639 aa32.98■■■□□ 2.87
MRPL55-230ENST00000489430 ERICH3Q5RHP9 1530 aa32.94■■■□□ 2.86
MRPL55-230ENST00000489430 CLASP1Q7Z460 1538 aa32.92■■■□□ 2.86
MRPL55-230ENST00000489430 FHAD1B1AJZ9 1412 aa32.89■■■□□ 2.86
MRPL55-230ENST00000489430 ADAMTS12P58397 1594 aa32.86■■■□□ 2.85
MRPL55-230ENST00000489430 GRIN2AQ12879 1464 aa32.86■■■□□ 2.85
MRPL55-230ENST00000489430 KIF27Q86VH2 1401 aa32.77■■■□□ 2.84
MRPL55-230ENST00000489430 NUP160Q12769 1436 aa32.76■■■□□ 2.83
MRPL55-230ENST00000489430 CYB5RLQ6IPT4 315 aa32.73■■■□□ 2.83
MRPL55-230ENST00000489430 ARAP1Q96P48 1450 aa32.71■■■□□ 2.83
MRPL55-230ENST00000489430 IGF1RP08069 1367 aa32.67■■■□□ 2.82
MRPL55-230ENST00000489430 CEP170Q5SW79 1584 aa32.63■■■□□ 2.81
MRPL55-230ENST00000489430 CUL7Q14999 1698 aa32.53■■■□□ 2.8
MRPL55-230ENST00000489430 SHROOM2Q13796 1616 aa32.48■■■□□ 2.79
MRPL55-230ENST00000489430 CARMIL1Q5VZK9 1371 aa32.45■■■□□ 2.79
MRPL55-230ENST00000489430 JPH4Q96JJ6 628 aa32.43■■■□□ 2.78
MRPL55-230ENST00000489430 RUSC2Q8N2Y8 1516 aa32.38■■■□□ 2.77
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms