Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
VMP1Q96GC9 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
VMP1Q96GC9 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC14.93□□□□□ -0.02
VMP1Q96GC9 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC14.93□□□□□ -0.02
VMP1Q96GC9 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
VMP1Q96GC9 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
VMP1Q96GC9 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
VMP1Q96GC9 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
VMP1Q96GC9 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
VMP1Q96GC9 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
VMP1Q96GC9 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
VMP1Q96GC9 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
VMP1Q96GC9 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
VMP1Q96GC9 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
VMP1Q96GC9 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
VMP1Q96GC9 ACKR3-201ENST00000272928 2203 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
VMP1Q96GC9 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
VMP1Q96GC9 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
VMP1Q96GC9 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
VMP1Q96GC9 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC14.92□□□□□ -0.02
VMP1Q96GC9 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
VMP1Q96GC9 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
VMP1Q96GC9 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
VMP1Q96GC9 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
VMP1Q96GC9 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC14.92□□□□□ -0.02
VMP1Q96GC9 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
VMP1Q96GC9 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
VMP1Q96GC9 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC14.92□□□□□ -0.02
VMP1Q96GC9 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC14.92□□□□□ -0.02
VMP1Q96GC9 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC14.92□□□□□ -0.02
VMP1Q96GC9 COQ9-214ENST00000567933 882 ntTSL 3 BASIC14.92□□□□□ -0.02
VMP1Q96GC9 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC14.92□□□□□ -0.02
VMP1Q96GC9 NID2-208ENST00000617139 3827 ntTSL 5 BASIC14.92□□□□□ -0.02
VMP1Q96GC9 AL033527.5-202ENST00000641632 1098 ntBASIC14.92□□□□□ -0.02
VMP1Q96GC9 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC14.92□□□□□ -0.02
VMP1Q96GC9 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
VMP1Q96GC9 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
VMP1Q96GC9 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
VMP1Q96GC9 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC14.92□□□□□ -0.02
VMP1Q96GC9 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
VMP1Q96GC9 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC14.92□□□□□ -0.02
VMP1Q96GC9 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
VMP1Q96GC9 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
VMP1Q96GC9 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
VMP1Q96GC9 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
VMP1Q96GC9 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
VMP1Q96GC9 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
VMP1Q96GC9 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
VMP1Q96GC9 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
VMP1Q96GC9 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC14.92□□□□□ -0.02
VMP1Q96GC9 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
VMP1Q96GC9 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
VMP1Q96GC9 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
VMP1Q96GC9 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC14.92□□□□□ -0.02
VMP1Q96GC9 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC14.92□□□□□ -0.02
VMP1Q96GC9 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
VMP1Q96GC9 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
VMP1Q96GC9 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
VMP1Q96GC9 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC14.91□□□□□ -0.02
VMP1Q96GC9 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
VMP1Q96GC9 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
VMP1Q96GC9 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
VMP1Q96GC9 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
VMP1Q96GC9 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC14.91□□□□□ -0.02
VMP1Q96GC9 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
VMP1Q96GC9 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
VMP1Q96GC9 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
VMP1Q96GC9 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
VMP1Q96GC9 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
VMP1Q96GC9 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC14.91□□□□□ -0.02
VMP1Q96GC9 FO393414.2-201ENST00000405153 598 ntBASIC14.91□□□□□ -0.02
VMP1Q96GC9 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC14.91□□□□□ -0.02
VMP1Q96GC9 FXR1-221ENST00000491674 365 ntTSL 2 BASIC14.91□□□□□ -0.02
VMP1Q96GC9 SSH2-210ENST00000582084 560 ntTSL 3 BASIC14.91□□□□□ -0.02
VMP1Q96GC9 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC14.91□□□□□ -0.02
VMP1Q96GC9 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
VMP1Q96GC9 AL844908.2-201ENST00000609461 460 ntBASIC14.91□□□□□ -0.02
VMP1Q96GC9 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
VMP1Q96GC9 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
VMP1Q96GC9 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
VMP1Q96GC9 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
VMP1Q96GC9 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC14.91□□□□□ -0.02
VMP1Q96GC9 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC14.91□□□□□ -0.02
VMP1Q96GC9 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
VMP1Q96GC9 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
VMP1Q96GC9 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
VMP1Q96GC9 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
VMP1Q96GC9 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
VMP1Q96GC9 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC14.91□□□□□ -0.02
VMP1Q96GC9 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
VMP1Q96GC9 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC14.9□□□□□ -0.02
VMP1Q96GC9 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VMP1Q96GC9 PGR-210ENST00000619228 3038 ntTSL 5 BASIC14.9□□□□□ -0.02
VMP1Q96GC9 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VMP1Q96GC9 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC14.9□□□□□ -0.02
VMP1Q96GC9 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VMP1Q96GC9 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
VMP1Q96GC9 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
VMP1Q96GC9 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC14.9□□□□□ -0.02
VMP1Q96GC9 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC14.9□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms