RNA–Protein interactions for RNA: ENST00000394963.8

SMARCD1-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCD1, Length 3,658 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-202ENST00000394963 NISCHQ9Y2I1 1504 aa31.98■■■□□ 2.71
SMARCD1-202ENST00000394963 DCAF8L2P0C7V8 631 aa29.39■■■□□ 2.3
SMARCD1-202ENST00000394963 SHROOM4Q9ULL8 1493 aa28.83■■■□□ 2.21
SMARCD1-202ENST00000394963 SUPT5HO00267 1087 aaKnown RBP28.31■■■□□ 2.12
SMARCD1-202ENST00000394963 ABCC9O60706 1549 aa26.98■■□□□ 1.91
SMARCD1-202ENST00000394963 EHMT2Q96KQ7 1210 aa26.88■■□□□ 1.89
SMARCD1-202ENST00000394963 ZCCHC6Q5VYS8 1495 aaKnown RBP26.71■■□□□ 1.87
SMARCD1-202ENST00000394963 CCDC180Q9P1Z9 1646 aa26.6■■□□□ 1.85
SMARCD1-202ENST00000394963 FAM9AQ8IZU1 332 aaPredicted RBP26.48■■□□□ 1.83
SMARCD1-202ENST00000394963 CHIC1Q5VXU3 224 aa26.27■■□□□ 1.8
SMARCD1-202ENST00000394963 PABPN1Q86U42 306 aaKnown RBP eCLIP26.24■■□□□ 1.79
SMARCD1-202ENST00000394963 SCRIBQ14160 1630 aa26.12■■□□□ 1.77
SMARCD1-202ENST00000394963 LOC105371045A0A1W2PR82 267 aa26.1■■□□□ 1.77
SMARCD1-202ENST00000394963 TRIM41Q8WV44 630 aa26.02■■□□□ 1.76
SMARCD1-202ENST00000394963 PCGF6Q9BYE7 350 aa25.84■■□□□ 1.73
SMARCD1-202ENST00000394963 TTBK1Q5TCY1 1321 aaPredicted RBP25.76■■□□□ 1.71
SMARCD1-202ENST00000394963 PPARGC1BQ86YN6 1023 aaKnown RBP25.66■■□□□ 1.7
SMARCD1-202ENST00000394963 RANGAP1P46060 587 aaPredicted RBP25.59■■□□□ 1.69
SMARCD1-202ENST00000394963 MYO15BQ96JP2 1530 aa25.51■■□□□ 1.67
SMARCD1-202ENST00000394963 DCAF1Q9Y4B6 1507 aa25.47■■□□□ 1.67
SMARCD1-202ENST00000394963 CECR2Q9BXF3 1484 aa25.46■■□□□ 1.67
SMARCD1-202ENST00000394963 RSF1Q96T23 1441 aaPredicted RBP25.44■■□□□ 1.66
SMARCD1-202ENST00000394963 NACADO15069 1562 aa25.24■■□□□ 1.63
SMARCD1-202ENST00000394963 UBTFP17480 764 aaKnown RBP25.22■■□□□ 1.63
SMARCD1-202ENST00000394963 RB1CC1Q8TDY2 1594 aa25.2■■□□□ 1.63
SMARCD1-202ENST00000394963 MROH2BQ7Z745 1585 aa25.08■■□□□ 1.61
SMARCD1-202ENST00000394963 WIZO95785 1651 aa24.84■■□□□ 1.57
SMARCD1-202ENST00000394963 TRIM26Q12899 539 aaPredicted RBP24.8■■□□□ 1.56
SMARCD1-202ENST00000394963 APLP2Q06481 763 aa24.7■■□□□ 1.54
SMARCD1-202ENST00000394963 HRCP23327 699 aa24.69■■□□□ 1.54
SMARCD1-202ENST00000394963 ATP1B4Q9UN42 357 aaPredicted RBP24.66■■□□□ 1.54
SMARCD1-202ENST00000394963 BAZ1AQ9NRL2 1556 aaPredicted RBP24.64■■□□□ 1.54
SMARCD1-202ENST00000394963 CCER1Q8TC90 406 aaPredicted RBP24.55■■□□□ 1.52
SMARCD1-202ENST00000394963 CSRNP3Q8WYN3 585 aa24.55■■□□□ 1.52
SMARCD1-202ENST00000394963 CCDC88BA6NC98 1476 aa24.52■■□□□ 1.52
SMARCD1-202ENST00000394963 ABCC8Q09428 1581 aa24.52■■□□□ 1.52
SMARCD1-202ENST00000394963 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.5■■□□□ 1.51
SMARCD1-202ENST00000394963 HNRNPUL2Q1KMD3 747 aaKnown RBP24.43■■□□□ 1.5
SMARCD1-202ENST00000394963 BAZ1BQ9UIG0 1483 aaKnown RBP24.38■■□□□ 1.49
SMARCD1-202ENST00000394963 SOGA1O94964 1423 aa24.37■■□□□ 1.49
SMARCD1-202ENST00000394963 ITGAEP38570 1179 aa24.35■■□□□ 1.49
SMARCD1-202ENST00000394963 SMARCA4P51532 1647 aa24.33■■□□□ 1.48
SMARCD1-202ENST00000394963 P3H3Q8IVL6 736 aa24.25■■□□□ 1.47
SMARCD1-202ENST00000394963 WRNQ14191 1432 aaPredicted RBP eCLIP24.23■■□□□ 1.47
SMARCD1-202ENST00000394963 TOP2AP11388 1531 aaKnown RBP24.18■■□□□ 1.46
SMARCD1-202ENST00000394963 RUSC2Q8N2Y8 1516 aa24.17■■□□□ 1.46
SMARCD1-202ENST00000394963 BICRAQ9NZM4 1560 aa24.17■■□□□ 1.46
SMARCD1-202ENST00000394963 ATAD2BQ9ULI0 1458 aa24.15■■□□□ 1.46
SMARCD1-202ENST00000394963 UNC13AQ9UPW8 1703 aa24.13■■□□□ 1.45
SMARCD1-202ENST00000394963 DNAJC5BQ9UF47 199 aa24.06■■□□□ 1.44
SMARCD1-202ENST00000394963 SMARCA2P51531 1590 aa24.05■■□□□ 1.44
SMARCD1-202ENST00000394963 CEP162Q5TB80 1403 aa23.99■■□□□ 1.43
SMARCD1-202ENST00000394963 ZEB1P37275 1124 aaPredicted RBP23.99■■□□□ 1.43
SMARCD1-202ENST00000394963 ARID3CA6NKF2 412 aa23.98■■□□□ 1.43
SMARCD1-202ENST00000394963 FBLN2P98095 1184 aa23.83■■□□□ 1.41
SMARCD1-202ENST00000394963 EIF4G1Q04637 1599 aaKnown RBP23.81■■□□□ 1.4
SMARCD1-202ENST00000394963 CLIP1P30622 1438 aa23.81■■□□□ 1.4
SMARCD1-202ENST00000394963 FAM50AQ14320 339 aaKnown RBP23.77■■□□□ 1.4
SMARCD1-202ENST00000394963 GOLGA3Q08378 1498 aa23.76■■□□□ 1.39
SMARCD1-202ENST00000394963 TNIKQ9UKE5 1360 aa23.75■■□□□ 1.39
SMARCD1-202ENST00000394963 YTHDC1Q96MU7 727 aaKnown RBP23.68■■□□□ 1.38
SMARCD1-202ENST00000394963 RAPGEF2Q9Y4G8 1499 aa23.65■■□□□ 1.38
SMARCD1-202ENST00000394963 EEA1Q15075 1411 aa23.64■■□□□ 1.37
SMARCD1-202ENST00000394963 CEP164Q9UPV0 1460 aa23.61■■□□□ 1.37
SMARCD1-202ENST00000394963 CUX2O14529 1486 aa23.61■■□□□ 1.37
SMARCD1-202ENST00000394963 SYNJ1O43426 1573 aa23.6■■□□□ 1.37
SMARCD1-202ENST00000394963 KIF27Q86VH2 1401 aa23.59■■□□□ 1.37
SMARCD1-202ENST00000394963 CADPSQ9ULU8 1353 aa23.57■■□□□ 1.36
SMARCD1-202ENST00000394963 KANK4Q5T7N3 995 aaPredicted RBP23.55■■□□□ 1.36
SMARCD1-202ENST00000394963 NCAPD3P42695 1498 aa23.54■■□□□ 1.36
SMARCD1-202ENST00000394963 NESP48681 1621 aa23.53■■□□□ 1.36
SMARCD1-202ENST00000394963 TDRD9Q8NDG6 1382 aaKnown RBP23.52■■□□□ 1.36
SMARCD1-202ENST00000394963 NEUROD1Q13562 356 aa23.49■■□□□ 1.35
SMARCD1-202ENST00000394963 CC2D2AQ9P2K1 1620 aa23.49■■□□□ 1.35
SMARCD1-202ENST00000394963 CARMIL1Q5VZK9 1371 aa23.43■■□□□ 1.34
SMARCD1-202ENST00000394963 DIEXFQ68CQ4 756 aaKnown RBP23.43■■□□□ 1.34
SMARCD1-202ENST00000394963 RAD54L2Q9Y4B4 1467 aa23.35■■□□□ 1.33
SMARCD1-202ENST00000394963 FANCD2Q9BXW9 1451 aa23.34■■□□□ 1.33
SMARCD1-202ENST00000394963 CFTRP13569 1480 aa23.29■■□□□ 1.32
SMARCD1-202ENST00000394963 CHIC2Q9UKJ5 165 aa23.28■■□□□ 1.32
SMARCD1-202ENST00000394963 VPS8Q8N3P4 1428 aa23.28■■□□□ 1.32
SMARCD1-202ENST00000394963 CUX1P39880 1505 aa23.28■■□□□ 1.32
SMARCD1-202ENST00000394963 PEG3Q9GZU2 1588 aa23.26■■□□□ 1.31
SMARCD1-202ENST00000394963 FGD5Q6ZNL6 1462 aa23.26■■□□□ 1.31
SMARCD1-202ENST00000394963 IGF1RP08069 1367 aa23.24■■□□□ 1.31
SMARCD1-202ENST00000394963 CNGB1Q14028 1251 aaPredicted RBP23.22■■□□□ 1.31
SMARCD1-202ENST00000394963 TRIM52Q96A61 297 aa23.21■■□□□ 1.31
SMARCD1-202ENST00000394963 ZNF777Q9ULD5 760 aaPredicted RBP23.2■■□□□ 1.3
SMARCD1-202ENST00000394963 CHMP7Q8WUX9 453 aaPredicted RBP23.19■■□□□ 1.3
SMARCD1-202ENST00000394963 ERCC6Q03468 1493 aa23.19■■□□□ 1.3
SMARCD1-202ENST00000394963 HMGXB3Q12766 1538 aa23.17■■□□□ 1.3
SMARCD1-202ENST00000394963 HIRIP3Q9BW71 556 aaPredicted RBP23.14■■□□□ 1.3
SMARCD1-202ENST00000394963 ZNF316A6NFI3 1004 aaPredicted RBP23.14■■□□□ 1.29
SMARCD1-202ENST00000394963 FHOD3Q2V2M9 1422 aa23.12■■□□□ 1.29
SMARCD1-202ENST00000394963 TOP2BQ02880 1626 aa23.1■■□□□ 1.29
SMARCD1-202ENST00000394963 MTUS2Q5JR59 1369 aa23.1■■□□□ 1.29
SMARCD1-202ENST00000394963 PDS5BQ9NTI5 1447 aa23.1■■□□□ 1.29
SMARCD1-202ENST00000394963 RRP7BPQ9NSQ0 103 aa23.06■■□□□ 1.28
SMARCD1-202ENST00000394963 ARAP1Q96P48 1450 aa23.03■■□□□ 1.28
SMARCD1-202ENST00000394963 KIF21BO75037 1637 aa23.02■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms