RNA–Protein interactions for RNA: ENST00000374180.3

HDHD3-202, Transcript of haloacid dehalogenase like hydrolase domain containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDHD3, Length 1,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDHD3-202ENST00000374180 NISCHQ9Y2I1 1504 aa38.38■■■■□ 3.73
HDHD3-202ENST00000374180 CCDC180Q9P1Z9 1646 aa33.97■■■■□ 3.03
HDHD3-202ENST00000374180 ABCC9O60706 1549 aa33.22■■■□□ 2.91
HDHD3-202ENST00000374180 DCAF8L2P0C7V8 631 aa32.16■■■□□ 2.74
HDHD3-202ENST00000374180 ZCCHC6Q5VYS8 1495 aaKnown RBP31.97■■■□□ 2.71
HDHD3-202ENST00000374180 NACADO15069 1562 aa31.96■■■□□ 2.71
HDHD3-202ENST00000374180 RB1CC1Q8TDY2 1594 aa31.96■■■□□ 2.71
HDHD3-202ENST00000374180 MYO15BQ96JP2 1530 aa31.81■■■□□ 2.68
HDHD3-202ENST00000374180 DCAF1Q9Y4B6 1507 aa31.73■■■□□ 2.67
HDHD3-202ENST00000374180 UNC13AQ9UPW8 1703 aa31.17■■■□□ 2.58
HDHD3-202ENST00000374180 PABPN1Q86U42 306 aaKnown RBP eCLIP31.13■■■□□ 2.57
HDHD3-202ENST00000374180 SCRIBQ14160 1630 aa31.06■■■□□ 2.56
HDHD3-202ENST00000374180 BICRAQ9NZM4 1560 aa30.97■■■□□ 2.55
HDHD3-202ENST00000374180 SHROOM4Q9ULL8 1493 aa30.66■■■□□ 2.5
HDHD3-202ENST00000374180 DNAJC5BQ9UF47 199 aa30.4■■■□□ 2.46
HDHD3-202ENST00000374180 EIF4G1Q04637 1599 aaKnown RBP30.16■■■□□ 2.42
HDHD3-202ENST00000374180 CC2D2AQ9P2K1 1620 aa30■■■□□ 2.39
HDHD3-202ENST00000374180 CECR2Q9BXF3 1484 aa29.9■■■□□ 2.38
HDHD3-202ENST00000374180 BAZ1AQ9NRL2 1556 aaPredicted RBP29.72■■■□□ 2.35
HDHD3-202ENST00000374180 SMARCA4P51532 1647 aa29.71■■■□□ 2.35
HDHD3-202ENST00000374180 MROH2BQ7Z745 1585 aa29.58■■■□□ 2.33
HDHD3-202ENST00000374180 ATAD2BQ9ULI0 1458 aa29.56■■■□□ 2.32
HDHD3-202ENST00000374180 NCAPD3P42695 1498 aa29.53■■■□□ 2.32
HDHD3-202ENST00000374180 SMARCA2P51531 1590 aa29.52■■■□□ 2.32
HDHD3-202ENST00000374180 PEG3Q9GZU2 1588 aa29.41■■■□□ 2.3
HDHD3-202ENST00000374180 HMGXB3Q12766 1538 aa29.34■■■□□ 2.29
HDHD3-202ENST00000374180 BAZ1BQ9UIG0 1483 aaKnown RBP29.33■■■□□ 2.29
HDHD3-202ENST00000374180 RSF1Q96T23 1441 aaPredicted RBP29.32■■■□□ 2.28
HDHD3-202ENST00000374180 WIZO95785 1651 aa29.24■■■□□ 2.27
HDHD3-202ENST00000374180 TOP2AP11388 1531 aaKnown RBP28.94■■■□□ 2.22
HDHD3-202ENST00000374180 SUPT5HO00267 1087 aaKnown RBP28.78■■■□□ 2.2
HDHD3-202ENST00000374180 NESP48681 1621 aa28.77■■■□□ 2.2
HDHD3-202ENST00000374180 CADPSQ9ULU8 1353 aa28.7■■■□□ 2.19
HDHD3-202ENST00000374180 LAMC3Q9Y6N6 1575 aa28.69■■■□□ 2.18
HDHD3-202ENST00000374180 CCDC88BA6NC98 1476 aa28.66■■■□□ 2.18
HDHD3-202ENST00000374180 ERCC6Q03468 1493 aa28.63■■■□□ 2.17
HDHD3-202ENST00000374180 PDS5BQ9NTI5 1447 aa28.56■■■□□ 2.16
HDHD3-202ENST00000374180 CFTRP13569 1480 aa28.53■■■□□ 2.16
HDHD3-202ENST00000374180 KIF21AQ7Z4S6 1674 aa28.37■■■□□ 2.13
HDHD3-202ENST00000374180 FANCD2Q9BXW9 1451 aa28.35■■■□□ 2.13
HDHD3-202ENST00000374180 CEP164Q9UPV0 1460 aa28.29■■■□□ 2.12
HDHD3-202ENST00000374180 CUX2O14529 1486 aa28.24■■■□□ 2.11
HDHD3-202ENST00000374180 THOC2Q8NI27 1593 aaKnown RBP28.23■■■□□ 2.11
HDHD3-202ENST00000374180 MRC2Q9UBG0 1479 aa28.21■■■□□ 2.11
HDHD3-202ENST00000374180 PRDM2Q13029 1718 aa28.21■■■□□ 2.11
HDHD3-202ENST00000374180 WDR62O43379 1518 aa28.08■■■□□ 2.09
HDHD3-202ENST00000374180 URB2Q14146 1524 aaKnown RBP28.03■■■□□ 2.08
HDHD3-202ENST00000374180 ABCC8Q09428 1581 aa27.92■■■□□ 2.06
HDHD3-202ENST00000374180 TOPBP1Q92547 1522 aa27.9■■■□□ 2.06
HDHD3-202ENST00000374180 DNMBPQ6XZF7 1577 aa27.86■■■□□ 2.05
HDHD3-202ENST00000374180 CUX1P39880 1505 aa27.73■■■□□ 2.03
HDHD3-202ENST00000374180 IFT140Q96RY7 1462 aa27.7■■■□□ 2.02
HDHD3-202ENST00000374180 POLA1P09884 1462 aaPredicted RBP27.67■■■□□ 2.02
HDHD3-202ENST00000374180 WRNQ14191 1432 aaPredicted RBP eCLIP27.65■■■□□ 2.02
HDHD3-202ENST00000374180 FGD5Q6ZNL6 1462 aa27.62■■■□□ 2.01
HDHD3-202ENST00000374180 SOGA1O94964 1423 aa27.62■■■□□ 2.01
HDHD3-202ENST00000374180 RAD54L2Q9Y4B4 1467 aa27.57■■■□□ 2
HDHD3-202ENST00000374180 ZNF608Q9ULD9 1512 aaPredicted RBP27.56■■■□□ 2
HDHD3-202ENST00000374180 TARBP1Q13395 1621 aaKnown RBP27.55■■■□□ 2
HDHD3-202ENST00000374180 TOP2BQ02880 1626 aa27.52■■■□□ 2
HDHD3-202ENST00000374180 SYNJ1O43426 1573 aa27.51■■■□□ 2
HDHD3-202ENST00000374180 BIVM-ERCC5R4GMW8 1640 aa27.48■■□□□ 1.99
HDHD3-202ENST00000374180 AQRO60306 1485 aaKnown RBP eCLIP27.46■■□□□ 1.996e-16■■■■■ 34.9
HDHD3-202ENST00000374180 TDRD9Q8NDG6 1382 aaKnown RBP27.45■■□□□ 1.99
HDHD3-202ENST00000374180 EIF4G3O43432 1585 aaKnown RBP27.4■■□□□ 1.98
HDHD3-202ENST00000374180 ABCA10Q8WWZ4 1543 aa27.36■■□□□ 1.97
HDHD3-202ENST00000374180 WDR97A6NE52 1622 aa27.32■■□□□ 1.96
HDHD3-202ENST00000374180 DNAJC5Q9H3Z4 198 aa27.28■■□□□ 1.96
HDHD3-202ENST00000374180 GAPVD1Q14C86 1478 aa27.27■■□□□ 1.96
HDHD3-202ENST00000374180 GRIN2BQ13224 1484 aa27.24■■□□□ 1.95
HDHD3-202ENST00000374180 OSCARQ8IYS5 282 aa27.19■■□□□ 1.94
HDHD3-202ENST00000374180 ABCA5Q8WWZ7 1642 aa27.19■■□□□ 1.94
HDHD3-202ENST00000374180 TRIM41Q8WV44 630 aa27.19■■□□□ 1.94
HDHD3-202ENST00000374180 FBLN2P98095 1184 aa27.18■■□□□ 1.94
HDHD3-202ENST00000374180 SNAPC4Q5SXM2 1469 aa27.17■■□□□ 1.94
HDHD3-202ENST00000374180 MAGI1Q96QZ7 1491 aaPredicted RBP27.14■■□□□ 1.93
HDHD3-202ENST00000374180 CHMP7Q8WUX9 453 aaPredicted RBP27.12■■□□□ 1.93
HDHD3-202ENST00000374180 PBRM1Q86U86 1689 aa27.11■■□□□ 1.93
HDHD3-202ENST00000374180 KIF27Q86VH2 1401 aa27.07■■□□□ 1.92
HDHD3-202ENST00000374180 SYNJ2O15056 1496 aa27.04■■□□□ 1.92
HDHD3-202ENST00000374180 ERICH3Q5RHP9 1530 aa27.03■■□□□ 1.92
HDHD3-202ENST00000374180 CHD1O14646 1710 aa27.01■■□□□ 1.91
HDHD3-202ENST00000374180 IGF1RP08069 1367 aa26.96■■□□□ 1.91
HDHD3-202ENST00000374180 FHAD1B1AJZ9 1412 aa26.96■■□□□ 1.91
HDHD3-202ENST00000374180 ADAMTS12P58397 1594 aa26.93■■□□□ 1.9
HDHD3-202ENST00000374180 CHIC1Q5VXU3 224 aa26.92■■□□□ 1.9
HDHD3-202ENST00000374180 GRIN2AQ12879 1464 aa26.88■■□□□ 1.89
HDHD3-202ENST00000374180 RUSC2Q8N2Y8 1516 aa26.86■■□□□ 1.89
HDHD3-202ENST00000374180 CARMIL1Q5VZK9 1371 aa26.8■■□□□ 1.88
HDHD3-202ENST00000374180 CUL7Q14999 1698 aa26.79■■□□□ 1.88
HDHD3-202ENST00000374180 CLASP1Q7Z460 1538 aa26.75■■□□□ 1.87
HDHD3-202ENST00000374180 NUP160Q12769 1436 aa26.74■■□□□ 1.87
HDHD3-202ENST00000374180 CEP170Q5SW79 1584 aa26.71■■□□□ 1.87
HDHD3-202ENST00000374180 ARHGEF11O15085 1522 aa26.65■■□□□ 1.86
HDHD3-202ENST00000374180 CSRNP3Q8WYN3 585 aa26.65■■□□□ 1.86
HDHD3-202ENST00000374180 EEA1Q15075 1411 aa26.64■■□□□ 1.85
HDHD3-202ENST00000374180 RAPGEF2Q9Y4G8 1499 aa26.63■■□□□ 1.85
HDHD3-202ENST00000374180 FAM9AQ8IZU1 332 aaPredicted RBP26.62■■□□□ 1.85
HDHD3-202ENST00000374180 RIMBP3CA6NJZ7 1639 aa26.62■■□□□ 1.85
HDHD3-202ENST00000374180 RIMBP3BA6NNM3 1639 aa26.62■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 311.5 ms