RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 DCAF8L2P0C7V8 631 aa26.88■■□□□ 1.89
COL17A1-201ENST00000353479 NISCHQ9Y2I1 1504 aa26.64■■□□□ 1.86
COL17A1-201ENST00000353479 SUPT5HO00267 1087 aaKnown RBP25.25■■□□□ 1.63
COL17A1-201ENST00000353479 SHROOM4Q9ULL8 1493 aa25.16■■□□□ 1.62
COL17A1-201ENST00000353479 EHMT2Q96KQ7 1210 aa24.28■■□□□ 1.48
COL17A1-201ENST00000353479 FAM9AQ8IZU1 332 aaPredicted RBP23.77■■□□□ 1.4
COL17A1-201ENST00000353479 APLP2Q06481 763 aa23.61■■□□□ 1.37
COL17A1-201ENST00000353479 TRIM41Q8WV44 630 aa23.42■■□□□ 1.34
COL17A1-201ENST00000353479 RANGAP1P46060 587 aaPredicted RBP23.36■■□□□ 1.33
COL17A1-201ENST00000353479 TTBK1Q5TCY1 1321 aaPredicted RBP23.36■■□□□ 1.33
COL17A1-201ENST00000353479 ABCC9O60706 1549 aa23.11■■□□□ 1.29
COL17A1-201ENST00000353479 ATP1B4Q9UN42 357 aaPredicted RBP23.08■■□□□ 1.29
COL17A1-201ENST00000353479 UBTFP17480 764 aaKnown RBP23.07■■□□□ 1.28
COL17A1-201ENST00000353479 PCGF6Q9BYE7 350 aa23.01■■□□□ 1.27
COL17A1-201ENST00000353479 PABPN1Q86U42 306 aaKnown RBP eCLIP22.82■■□□□ 1.24
COL17A1-201ENST00000353479 CCER1Q8TC90 406 aaPredicted RBP22.62■■□□□ 1.21
COL17A1-201ENST00000353479 PPARGC1BQ86YN6 1023 aaKnown RBP22.6■■□□□ 1.21
COL17A1-201ENST00000353479 CHIC1Q5VXU3 224 aa22.5■■□□□ 1.19
COL17A1-201ENST00000353479 LOC105371045A0A1W2PR82 267 aa22.42■■□□□ 1.18
COL17A1-201ENST00000353479 ZEB1P37275 1124 aaPredicted RBP22.41■■□□□ 1.18
COL17A1-201ENST00000353479 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.39■■□□□ 1.17
COL17A1-201ENST00000353479 HNRNPUL2Q1KMD3 747 aaKnown RBP22.39■■□□□ 1.17
COL17A1-201ENST00000353479 PELP1Q8IZL8 1130 aaKnown RBP22.34■■□□□ 1.17
COL17A1-201ENST00000353479 ITGAEP38570 1179 aa22.24■■□□□ 1.15
COL17A1-201ENST00000353479 MYT1LQ9UL68 1186 aa22.2■■□□□ 1.14
COL17A1-201ENST00000353479 TRIM26Q12899 539 aaPredicted RBP22.18■■□□□ 1.14
COL17A1-201ENST00000353479 SCRIBQ14160 1630 aa22.09■■□□□ 1.13
COL17A1-201ENST00000353479 ZCCHC6Q5VYS8 1495 aaKnown RBP22.05■■□□□ 1.12
COL17A1-201ENST00000353479 CCDC180Q9P1Z9 1646 aa22.04■■□□□ 1.12
COL17A1-201ENST00000353479 CENPBP07199 599 aaPredicted RBP21.97■■□□□ 1.11
COL17A1-201ENST00000353479 FBLN2P98095 1184 aa21.88■■□□□ 1.09
COL17A1-201ENST00000353479 YTHDC1Q96MU7 727 aaKnown RBP21.83■■□□□ 1.08
COL17A1-201ENST00000353479 FAM50AQ14320 339 aaKnown RBP21.77■■□□□ 1.08
COL17A1-201ENST00000353479 POLR3GLQ9BT43 218 aa21.76■■□□□ 1.07
COL17A1-201ENST00000353479 RB1CC1Q8TDY2 1594 aa21.64■■□□□ 1.05
COL17A1-201ENST00000353479 HRCP23327 699 aa21.64■■□□□ 1.05
COL17A1-201ENST00000353479 CSRNP3Q8WYN3 585 aa21.61■■□□□ 1.05
COL17A1-201ENST00000353479 P3H3Q8IVL6 736 aa21.6■■□□□ 1.05
COL17A1-201ENST00000353479 NEFLP07196 543 aa21.6■■□□□ 1.05
COL17A1-201ENST00000353479 TRIM52Q96A61 297 aa21.56■■□□□ 1.04
COL17A1-201ENST00000353479 CNGB1Q14028 1251 aaPredicted RBP21.55■■□□□ 1.04
COL17A1-201ENST00000353479 ARID3CA6NKF2 412 aa21.54■■□□□ 1.04
COL17A1-201ENST00000353479 NACADO15069 1562 aa21.41■■□□□ 1.02
COL17A1-201ENST00000353479 SLC4A1APQ9BWU0 796 aaKnown RBP21.4■■□□□ 1.02
COL17A1-201ENST00000353479 NEUROD1Q13562 356 aa21.4■■□□□ 1.02
COL17A1-201ENST00000353479 ERICH6Q7L0X2 663 aa21.4■■□□□ 1.02
COL17A1-201ENST00000353479 ZNF777Q9ULD5 760 aaPredicted RBP21.27■■□□□ 1
COL17A1-201ENST00000353479 ZNF326Q5BKZ1 582 aaKnown RBP21.26■□□□□ 0.99
COL17A1-201ENST00000353479 RSF1Q96T23 1441 aaPredicted RBP21.23■□□□□ 0.99
COL17A1-201ENST00000353479 CDK11AQ9UQ88 783 aaPredicted RBP21.22■□□□□ 0.99
COL17A1-201ENST00000353479 DIEXFQ68CQ4 756 aaKnown RBP21.16■□□□□ 0.98
COL17A1-201ENST00000353479 BAZ1BQ9UIG0 1483 aaKnown RBP21.13■□□□□ 0.97
COL17A1-201ENST00000353479 CHMP7Q8WUX9 453 aaPredicted RBP21.07■□□□□ 0.96
COL17A1-201ENST00000353479 NPM1P06748 294 aaKnown RBP eCLIP21.04■□□□□ 0.96
COL17A1-201ENST00000353479 DCAF1Q9Y4B6 1507 aa21.02■□□□□ 0.95
COL17A1-201ENST00000353479 BCANQ96GW7 911 aa20.98■□□□□ 0.95
COL17A1-201ENST00000353479 CECR2Q9BXF3 1484 aa20.95■□□□□ 0.94
COL17A1-201ENST00000353479 BAZ1AQ9NRL2 1556 aaPredicted RBP20.94■□□□□ 0.94
COL17A1-201ENST00000353479 WRNQ14191 1432 aaPredicted RBP eCLIP20.92■□□□□ 0.94
COL17A1-201ENST00000353479 ESF1Q9H501 851 aaKnown RBP20.88■□□□□ 0.93
COL17A1-201ENST00000353479 ANP32CO43423 234 aa20.88■□□□□ 0.93
COL17A1-201ENST00000353479 CHIC2Q9UKJ5 165 aa20.87■□□□□ 0.93
COL17A1-201ENST00000353479 CLIP1P30622 1438 aa20.85■□□□□ 0.93
COL17A1-201ENST00000353479 ZNF316A6NFI3 1004 aaPredicted RBP20.83■□□□□ 0.92
COL17A1-201ENST00000353479 MTUS2Q5JR59 1369 aa20.82■□□□□ 0.92
COL17A1-201ENST00000353479 ERCC6Q03468 1493 aa20.81■□□□□ 0.92
COL17A1-201ENST00000353479 CHGAP10645 457 aaKnown RBP20.81■□□□□ 0.92
COL17A1-201ENST00000353479 PLPPR3Q6T4P5 718 aa20.81■□□□□ 0.92
COL17A1-201ENST00000353479 DAXXQ9UER7 740 aaPredicted RBP20.8■□□□□ 0.92
COL17A1-201ENST00000353479 EEA1Q15075 1411 aa20.78■□□□□ 0.92
COL17A1-201ENST00000353479 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.76■□□□□ 0.91
COL17A1-201ENST00000353479 GOLGA3Q08378 1498 aa20.76■□□□□ 0.91
COL17A1-201ENST00000353479 KIF27Q86VH2 1401 aa20.75■□□□□ 0.91
COL17A1-201ENST00000353479 STAG3Q9UJ98 1225 aa20.75■□□□□ 0.91
COL17A1-201ENST00000353479 TONSLQ96HA7 1378 aa20.73■□□□□ 0.91
COL17A1-201ENST00000353479 TSPY4P0CV99 314 aa20.73■□□□□ 0.91
COL17A1-201ENST00000353479 TSPY10P0CW01 314 aa20.73■□□□□ 0.91
COL17A1-201ENST00000353479 MYO15BQ96JP2 1530 aa20.71■□□□□ 0.91
COL17A1-201ENST00000353479 KCNH8Q96L42 1107 aa20.7■□□□□ 0.9
COL17A1-201ENST00000353479 CEP162Q5TB80 1403 aa20.68■□□□□ 0.9
COL17A1-201ENST00000353479 MROH2BQ7Z745 1585 aa20.67■□□□□ 0.9
COL17A1-201ENST00000353479 CLSPNQ9HAW4 1339 aa20.66■□□□□ 0.9
COL17A1-201ENST00000353479 PLEKHD1A6NEE1 506 aa20.63■□□□□ 0.89
COL17A1-201ENST00000353479 SLC24A1O60721 1099 aa20.6■□□□□ 0.89
COL17A1-201ENST00000353479 CEP164Q9UPV0 1460 aa20.59■□□□□ 0.89
COL17A1-201ENST00000353479 RRP7BPQ9NSQ0 103 aa20.57■□□□□ 0.88
COL17A1-201ENST00000353479 NEFMP07197 916 aa20.56■□□□□ 0.88
COL17A1-201ENST00000353479 CCDC88BA6NC98 1476 aa20.55■□□□□ 0.88
COL17A1-201ENST00000353479 SMARCA2P51531 1590 aa20.54■□□□□ 0.88
COL17A1-201ENST00000353479 TNIKQ9UKE5 1360 aa20.53■□□□□ 0.88
COL17A1-201ENST00000353479 KDM2AQ9Y2K7 1162 aa20.51■□□□□ 0.87
COL17A1-201ENST00000353479 CUX2O14529 1486 aa20.51■□□□□ 0.87
COL17A1-201ENST00000353479 CANXP27824 592 aaKnown RBP20.46■□□□□ 0.87
COL17A1-201ENST00000353479 SOGA1O94964 1423 aa20.46■□□□□ 0.87
COL17A1-201ENST00000353479 CFDP1Q9UEE9 299 aaPredicted RBP20.45■□□□□ 0.86
COL17A1-201ENST00000353479 CARMIL1Q5VZK9 1371 aa20.45■□□□□ 0.86
COL17A1-201ENST00000353479 DDX10Q13206 875 aaKnown RBP20.44■□□□□ 0.86
COL17A1-201ENST00000353479 EIF4G1Q04637 1599 aaKnown RBP20.43■□□□□ 0.86
COL17A1-201ENST00000353479 ABCC8Q09428 1581 aa20.41■□□□□ 0.86
COL17A1-201ENST00000353479 GTF3C3Q9Y5Q9 886 aa20.4■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms