RNA–Protein interactions for RNA: ENST00000394601.8

PTBP1-204, Transcript of polypyrimidine tract binding protein 1, humanhuman

TSL 1 (best) BASIC

Gene PTBP1, Length 3,185 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTBP1-204ENST00000394601 NISCHQ9Y2I1 1504 aa32.91■■■□□ 2.86
PTBP1-204ENST00000394601 CCDC180Q9P1Z9 1646 aa28.15■■■□□ 2.1
PTBP1-204ENST00000394601 ZCCHC6Q5VYS8 1495 aaKnown RBP27.86■■■□□ 2.05
PTBP1-204ENST00000394601 SHROOM4Q9ULL8 1493 aa27.6■■■□□ 2.01
PTBP1-204ENST00000394601 DCAF1Q9Y4B6 1507 aa27.13■■□□□ 1.93
PTBP1-204ENST00000394601 SUPT5HO00267 1087 aaKnown RBP26.93■■□□□ 1.9
PTBP1-204ENST00000394601 DCAF8L2P0C7V8 631 aa26.77■■□□□ 1.88
PTBP1-204ENST00000394601 MYO15BQ96JP2 1530 aa26.41■■□□□ 1.82
PTBP1-204ENST00000394601 CHIC1Q5VXU3 224 aa26.35■■□□□ 1.81
PTBP1-204ENST00000394601 ABCC9O60706 1549 aa26.27■■□□□ 1.8
PTBP1-204ENST00000394601 SCRIBQ14160 1630 aa26.16■■□□□ 1.78
PTBP1-204ENST00000394601 NACADO15069 1562 aa25.96■■□□□ 1.75
PTBP1-204ENST00000394601 RSF1Q96T23 1441 aaPredicted RBP25.95■■□□□ 1.75
PTBP1-204ENST00000394601 RB1CC1Q8TDY2 1594 aa25.68■■□□□ 1.7
PTBP1-204ENST00000394601 PPARGC1BQ86YN6 1023 aaKnown RBP25.66■■□□□ 1.7
PTBP1-204ENST00000394601 CECR2Q9BXF3 1484 aa25.64■■□□□ 1.69
PTBP1-204ENST00000394601 MROH2BQ7Z745 1585 aa25.56■■□□□ 1.68
PTBP1-204ENST00000394601 PCGF6Q9BYE7 350 aa25.51■■□□□ 1.67
PTBP1-204ENST00000394601 HRCP23327 699 aa25.5■■□□□ 1.67
PTBP1-204ENST00000394601 LOC105371045A0A1W2PR82 267 aa25.47■■□□□ 1.67
PTBP1-204ENST00000394601 WIZO95785 1651 aa25.43■■□□□ 1.66
PTBP1-204ENST00000394601 UNC13AQ9UPW8 1703 aa25.35■■□□□ 1.65
PTBP1-204ENST00000394601 BAZ1AQ9NRL2 1556 aaPredicted RBP25.3■■□□□ 1.64
PTBP1-204ENST00000394601 EIF4G1Q04637 1599 aaKnown RBP25.23■■□□□ 1.63
PTBP1-204ENST00000394601 TRIM41Q8WV44 630 aa25.14■■□□□ 1.62
PTBP1-204ENST00000394601 SMARCA4P51532 1647 aa25.11■■□□□ 1.61
PTBP1-204ENST00000394601 TOP2AP11388 1531 aaKnown RBP25.03■■□□□ 1.6
PTBP1-204ENST00000394601 BICRAQ9NZM4 1560 aa24.99■■□□□ 1.59
PTBP1-204ENST00000394601 SMARCA2P51531 1590 aa24.92■■□□□ 1.58
PTBP1-204ENST00000394601 CCDC88BA6NC98 1476 aa24.88■■□□□ 1.57
PTBP1-204ENST00000394601 TRIM26Q12899 539 aaPredicted RBP24.84■■□□□ 1.57
PTBP1-204ENST00000394601 FAM9AQ8IZU1 332 aaPredicted RBP24.83■■□□□ 1.57
PTBP1-204ENST00000394601 PEG3Q9GZU2 1588 aa24.76■■□□□ 1.55
PTBP1-204ENST00000394601 ABCC8Q09428 1581 aa24.74■■□□□ 1.55
PTBP1-204ENST00000394601 PELP1Q8IZL8 1130 aaKnown RBP24.65■■□□□ 1.54
PTBP1-204ENST00000394601 PABPN1Q86U42 306 aaKnown RBP eCLIP24.64■■□□□ 1.542e-11■□□□□ 9.4
PTBP1-204ENST00000394601 EHMT2Q96KQ7 1210 aa24.52■■□□□ 1.52
PTBP1-204ENST00000394601 SCAF1Q9H7N4 1312 aaKnown RBP24.49■■□□□ 1.51
PTBP1-204ENST00000394601 SOGA1O94964 1423 aa24.45■■□□□ 1.51
PTBP1-204ENST00000394601 ATAD2BQ9ULI0 1458 aa24.44■■□□□ 1.5
PTBP1-204ENST00000394601 RUSC2Q8N2Y8 1516 aa24.39■■□□□ 1.49
PTBP1-204ENST00000394601 SYNJ1O43426 1573 aa24.31■■□□□ 1.48
PTBP1-204ENST00000394601 WRNQ14191 1432 aaPredicted RBP eCLIP24.3■■□□□ 1.483e-6■■■■□ 19.3
PTBP1-204ENST00000394601 EEA1Q15075 1411 aa24.29■■□□□ 1.48
PTBP1-204ENST00000394601 BAZ1BQ9UIG0 1483 aaKnown RBP24.27■■□□□ 1.48
PTBP1-204ENST00000394601 TNIKQ9UKE5 1360 aa24.24■■□□□ 1.47
PTBP1-204ENST00000394601 CEP162Q5TB80 1403 aa24.23■■□□□ 1.47
PTBP1-204ENST00000394601 CSRNP3Q8WYN3 585 aa24.18■■□□□ 1.46
PTBP1-204ENST00000394601 ZEB1P37275 1124 aaPredicted RBP24.15■■□□□ 1.46
PTBP1-204ENST00000394601 KIF21BO75037 1637 aa24.1■■□□□ 1.45
PTBP1-204ENST00000394601 GOLGA3Q08378 1498 aa24.1■■□□□ 1.45
PTBP1-204ENST00000394601 HMGXB3Q12766 1538 aa24.05■■□□□ 1.44
PTBP1-204ENST00000394601 TOP2BQ02880 1626 aa24.04■■□□□ 1.44
PTBP1-204ENST00000394601 NCAPD3P42695 1498 aa24.02■■□□□ 1.44
PTBP1-204ENST00000394601 BIVM-ERCC5R4GMW8 1640 aa24.01■■□□□ 1.43
PTBP1-204ENST00000394601 CEP164Q9UPV0 1460 aa23.99■■□□□ 1.43
PTBP1-204ENST00000394601 UBTFP17480 764 aaKnown RBP23.89■■□□□ 1.41
PTBP1-204ENST00000394601 RAPGEF2Q9Y4G8 1499 aa23.88■■□□□ 1.41
PTBP1-204ENST00000394601 GTF3C3Q9Y5Q9 886 aa23.85■■□□□ 1.41
PTBP1-204ENST00000394601 NEUROD1Q13562 356 aa23.84■■□□□ 1.41
PTBP1-204ENST00000394601 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.82■■□□□ 1.4
PTBP1-204ENST00000394601 CUX1P39880 1505 aa23.81■■□□□ 1.4
PTBP1-204ENST00000394601 CFTRP13569 1480 aa23.8■■□□□ 1.4
PTBP1-204ENST00000394601 CLIP1P30622 1438 aa23.77■■□□□ 1.4
PTBP1-204ENST00000394601 PRXQ9BXM0 1461 aa23.75■■□□□ 1.39
PTBP1-204ENST00000394601 PRDM2Q13029 1718 aa23.74■■□□□ 1.39
PTBP1-204ENST00000394601 ERICH3Q5RHP9 1530 aa23.72■■□□□ 1.39
PTBP1-204ENST00000394601 VPS8Q8N3P4 1428 aa23.72■■□□□ 1.39
PTBP1-204ENST00000394601 TTBK1Q5TCY1 1321 aaPredicted RBP23.7■■□□□ 1.39
PTBP1-204ENST00000394601 YTHDC1Q96MU7 727 aaKnown RBP23.69■■□□□ 1.38
PTBP1-204ENST00000394601 ACIN1Q9UKV3 1341 aaKnown RBP23.69■■□□□ 1.38
PTBP1-204ENST00000394601 CCER1Q8TC90 406 aaPredicted RBP23.64■■□□□ 1.38
PTBP1-204ENST00000394601 MYT1Q01538 1121 aa23.59■■□□□ 1.37
PTBP1-204ENST00000394601 ARAP1Q96P48 1450 aa23.57■■□□□ 1.36
PTBP1-204ENST00000394601 KIF27Q86VH2 1401 aa23.51■■□□□ 1.35
PTBP1-204ENST00000394601 CENPBP07199 599 aaPredicted RBP23.49■■□□□ 1.35
PTBP1-204ENST00000394601 CC2D2AQ9P2K1 1620 aa23.47■■□□□ 1.35
PTBP1-204ENST00000394601 CADPSQ9ULU8 1353 aa23.46■■□□□ 1.35
PTBP1-204ENST00000394601 DIEXFQ68CQ4 756 aaKnown RBP23.37■■□□□ 1.33
PTBP1-204ENST00000394601 ARHGAP35Q9NRY4 1499 aa23.36■■□□□ 1.33
PTBP1-204ENST00000394601 IGF1RP08069 1367 aa23.36■■□□□ 1.33
PTBP1-204ENST00000394601 RANGAP1P46060 587 aaPredicted RBP23.34■■□□□ 1.33
PTBP1-204ENST00000394601 FGD5Q6ZNL6 1462 aa23.33■■□□□ 1.32
PTBP1-204ENST00000394601 CUX2O14529 1486 aa23.31■■□□□ 1.32
PTBP1-204ENST00000394601 HNRNPUL2Q1KMD3 747 aaKnown RBP23.29■■□□□ 1.32
PTBP1-204ENST00000394601 KANK4Q5T7N3 995 aaPredicted RBP23.29■■□□□ 1.32
PTBP1-204ENST00000394601 FANCD2Q9BXW9 1451 aa23.23■■□□□ 1.31
PTBP1-204ENST00000394601 RRBP1Q9P2E9 1410 aaKnown RBP23.22■■□□□ 1.31
PTBP1-204ENST00000394601 APLP2Q06481 763 aa23.22■■□□□ 1.31
PTBP1-204ENST00000394601 DNMBPQ6XZF7 1577 aa23.18■■□□□ 1.3
PTBP1-204ENST00000394601 CARMIL1Q5VZK9 1371 aa23.16■■□□□ 1.3
PTBP1-204ENST00000394601 NESP48681 1621 aa23.13■■□□□ 1.29
PTBP1-204ENST00000394601 ABCA10Q8WWZ4 1543 aa23.12■■□□□ 1.29
PTBP1-204ENST00000394601 MAP3K1Q13233 1512 aa23.12■■□□□ 1.29
PTBP1-204ENST00000394601 TOPBP1Q92547 1522 aa23.12■■□□□ 1.29
PTBP1-204ENST00000394601 POLA1P09884 1462 aaPredicted RBP23.1■■□□□ 1.29
PTBP1-204ENST00000394601 ZNF316A6NFI3 1004 aaPredicted RBP23.1■■□□□ 1.29
PTBP1-204ENST00000394601 TIAM1Q13009 1591 aa23.09■■□□□ 1.29
PTBP1-204ENST00000394601 RAD54L2Q9Y4B4 1467 aa23.09■■□□□ 1.29
PTBP1-204ENST00000394601 DHX57Q6P158 1386 aaKnown RBP23.08■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms