RNA–Protein interactions for RNA: ENST00000349038.8

PTBP1-201, Transcript of polypyrimidine tract binding protein 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PTBP1, Length 3,155 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTBP1-201ENST00000349038 NISCHQ9Y2I1 1504 aa29.39■■■□□ 2.3
PTBP1-201ENST00000349038 PPARGC1BQ86YN6 1023 aaKnown RBP25.66■■□□□ 1.7
PTBP1-201ENST00000349038 PCGF6Q9BYE7 350 aa25.51■■□□□ 1.67
PTBP1-201ENST00000349038 SUPT5HO00267 1087 aaKnown RBP25.51■■□□□ 1.67
PTBP1-201ENST00000349038 HRCP23327 699 aa25.5■■□□□ 1.67
PTBP1-201ENST00000349038 SHROOM4Q9ULL8 1493 aa25.41■■□□□ 1.66
PTBP1-201ENST00000349038 CCDC180Q9P1Z9 1646 aa25.23■■□□□ 1.63
PTBP1-201ENST00000349038 ZCCHC6Q5VYS8 1495 aaKnown RBP24.97■■□□□ 1.59
PTBP1-201ENST00000349038 MYO15BQ96JP2 1530 aa24.67■■□□□ 1.54
PTBP1-201ENST00000349038 PELP1Q8IZL8 1130 aaKnown RBP24.65■■□□□ 1.54
PTBP1-201ENST00000349038 CHIC1Q5VXU3 224 aa24.6■■□□□ 1.53
PTBP1-201ENST00000349038 SCAF1Q9H7N4 1312 aaKnown RBP24.49■■□□□ 1.51
PTBP1-201ENST00000349038 LOC105371045A0A1W2PR82 267 aa24.46■■□□□ 1.51
PTBP1-201ENST00000349038 ABCC9O60706 1549 aa24.32■■□□□ 1.48
PTBP1-201ENST00000349038 EHMT2Q96KQ7 1210 aa24.3■■□□□ 1.48
PTBP1-201ENST00000349038 DCAF8L2P0C7V8 631 aa24.23■■□□□ 1.47
PTBP1-201ENST00000349038 DCAF1Q9Y4B6 1507 aa24.15■■□□□ 1.46
PTBP1-201ENST00000349038 TRIM26Q12899 539 aaPredicted RBP24.01■■□□□ 1.43
PTBP1-201ENST00000349038 GTF3C3Q9Y5Q9 886 aa23.85■■□□□ 1.41
PTBP1-201ENST00000349038 NEUROD1Q13562 356 aa23.84■■□□□ 1.41
PTBP1-201ENST00000349038 FAM9AQ8IZU1 332 aaPredicted RBP23.84■■□□□ 1.41
PTBP1-201ENST00000349038 YTHDC1Q96MU7 727 aaKnown RBP23.69■■□□□ 1.38
PTBP1-201ENST00000349038 ACIN1Q9UKV3 1341 aaKnown RBP23.69■■□□□ 1.38
PTBP1-201ENST00000349038 ZEB1P37275 1124 aaPredicted RBP23.68■■□□□ 1.38
PTBP1-201ENST00000349038 TTBK1Q5TCY1 1321 aaPredicted RBP23.64■■□□□ 1.38
PTBP1-201ENST00000349038 NACADO15069 1562 aa23.64■■□□□ 1.37
PTBP1-201ENST00000349038 RB1CC1Q8TDY2 1594 aa23.62■■□□□ 1.37
PTBP1-201ENST00000349038 MYT1Q01538 1121 aa23.59■■□□□ 1.37
PTBP1-201ENST00000349038 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.57■■□□□ 1.36
PTBP1-201ENST00000349038 CENPBP07199 599 aaPredicted RBP23.49■■□□□ 1.35
PTBP1-201ENST00000349038 CCER1Q8TC90 406 aaPredicted RBP23.47■■□□□ 1.35
PTBP1-201ENST00000349038 RSF1Q96T23 1441 aaPredicted RBP23.43■■□□□ 1.34
PTBP1-201ENST00000349038 DIEXFQ68CQ4 756 aaKnown RBP23.37■■□□□ 1.33
PTBP1-201ENST00000349038 SCRIBQ14160 1630 aa23.26■■□□□ 1.31
PTBP1-201ENST00000349038 TRIM41Q8WV44 630 aa23.26■■□□□ 1.31
PTBP1-201ENST00000349038 UNC13AQ9UPW8 1703 aa23.13■■□□□ 1.29
PTBP1-201ENST00000349038 BICRAQ9NZM4 1560 aa22.89■■□□□ 1.26
PTBP1-201ENST00000349038 CECR2Q9BXF3 1484 aa22.88■■□□□ 1.25
PTBP1-201ENST00000349038 MROH2BQ7Z745 1585 aa22.86■■□□□ 1.25
PTBP1-201ENST00000349038 MIER1Q8N108 512 aa22.79■■□□□ 1.24
PTBP1-201ENST00000349038 WIZO95785 1651 aa22.75■■□□□ 1.23
PTBP1-201ENST00000349038 EIF4G1Q04637 1599 aaKnown RBP22.74■■□□□ 1.23
PTBP1-201ENST00000349038 BCL11AQ9H165 835 aa22.74■■□□□ 1.23
PTBP1-201ENST00000349038 BAZ1AQ9NRL2 1556 aaPredicted RBP22.69■■□□□ 1.22
PTBP1-201ENST00000349038 ZNF316A6NFI3 1004 aaPredicted RBP22.65■■□□□ 1.22
PTBP1-201ENST00000349038 BCANQ96GW7 911 aa22.63■■□□□ 1.21
PTBP1-201ENST00000349038 PABPN1Q86U42 306 aaKnown RBP eCLIP22.62■■□□□ 1.212e-11■□□□□ 9.4
PTBP1-201ENST00000349038 WRNQ14191 1432 aaPredicted RBP eCLIP22.56■■□□□ 1.23e-6■■■■□ 19.3
PTBP1-201ENST00000349038 HNRNPUL2Q1KMD3 747 aaKnown RBP22.54■■□□□ 1.2
PTBP1-201ENST00000349038 CSRNP3Q8WYN3 585 aa22.47■■□□□ 1.19
PTBP1-201ENST00000349038 ANP32EQ9BTT0 268 aa22.44■■□□□ 1.18
PTBP1-201ENST00000349038 TOP2AP11388 1531 aaKnown RBP22.43■■□□□ 1.18
PTBP1-201ENST00000349038 CCDC88BA6NC98 1476 aa22.41■■□□□ 1.18
PTBP1-201ENST00000349038 CEP162Q5TB80 1403 aa22.4■■□□□ 1.18
PTBP1-201ENST00000349038 ABCC8Q09428 1581 aa22.4■■□□□ 1.18
PTBP1-201ENST00000349038 RANGAP1P46060 587 aaPredicted RBP22.37■■□□□ 1.17
PTBP1-201ENST00000349038 SUPT16HQ9Y5B9 1047 aaKnown RBP22.37■■□□□ 1.17
PTBP1-201ENST00000349038 TNIKQ9UKE5 1360 aa22.35■■□□□ 1.17
PTBP1-201ENST00000349038 TSHZ2Q9NRE2 1034 aa22.32■■□□□ 1.16
PTBP1-201ENST00000349038 SMARCA2P51531 1590 aa22.32■■□□□ 1.16
PTBP1-201ENST00000349038 SOGA1O94964 1423 aa22.28■■□□□ 1.16
PTBP1-201ENST00000349038 SMARCA4P51532 1647 aa22.28■■□□□ 1.16
PTBP1-201ENST00000349038 EEA1Q15075 1411 aa22.27■■□□□ 1.16
PTBP1-201ENST00000349038 DNAJC5BQ9UF47 199 aa22.23■■□□□ 1.15
PTBP1-201ENST00000349038 UBTFP17480 764 aaKnown RBP22.21■■□□□ 1.15
PTBP1-201ENST00000349038 RUSC2Q8N2Y8 1516 aa22.16■■□□□ 1.14
PTBP1-201ENST00000349038 ITGAEP38570 1179 aa22.15■■□□□ 1.14
PTBP1-201ENST00000349038 CC2D2AQ9P2K1 1620 aa22.14■■□□□ 1.13
PTBP1-201ENST00000349038 GOLGA3Q08378 1498 aa22.13■■□□□ 1.13
PTBP1-201ENST00000349038 FKBP8Q14318 412 aa22.07■■□□□ 1.12
PTBP1-201ENST00000349038 KCNH8Q96L42 1107 aa22.04■■□□□ 1.12
PTBP1-201ENST00000349038 ERICH6Q7L0X2 663 aa21.97■■□□□ 1.11
PTBP1-201ENST00000349038 KIF21BO75037 1637 aa21.96■■□□□ 1.11
PTBP1-201ENST00000349038 CEP164Q9UPV0 1460 aa21.96■■□□□ 1.11
PTBP1-201ENST00000349038 CLIP1P30622 1438 aa21.87■■□□□ 1.09
PTBP1-201ENST00000349038 SYNJ1O43426 1573 aa21.87■■□□□ 1.09
PTBP1-201ENST00000349038 PEG3Q9GZU2 1588 aa21.87■■□□□ 1.09
PTBP1-201ENST00000349038 VPS8Q8N3P4 1428 aa21.87■■□□□ 1.09
PTBP1-201ENST00000349038 RBM19Q9Y4C8 960 aaKnown RBP21.87■■□□□ 1.09
PTBP1-201ENST00000349038 PRKCSHP14314 528 aaPredicted RBP21.86■■□□□ 1.09
PTBP1-201ENST00000349038 APLP2Q06481 763 aa21.85■■□□□ 1.09
PTBP1-201ENST00000349038 NEFLP07196 543 aa21.84■■□□□ 1.09
PTBP1-201ENST00000349038 BAZ1BQ9UIG0 1483 aaKnown RBP21.83■■□□□ 1.09
PTBP1-201ENST00000349038 TRIM52Q96A61 297 aa21.82■■□□□ 1.08
PTBP1-201ENST00000349038 IRX6P78412 446 aaPredicted RBP21.79■■□□□ 1.08
PTBP1-201ENST00000349038 NCAPD3P42695 1498 aa21.76■■□□□ 1.07
PTBP1-201ENST00000349038 HIRIP3Q9BW71 556 aaPredicted RBP21.73■■□□□ 1.07
PTBP1-201ENST00000349038 ATAD2BQ9ULI0 1458 aa21.73■■□□□ 1.07
PTBP1-201ENST00000349038 RAPGEF2Q9Y4G8 1499 aa21.73■■□□□ 1.07
PTBP1-201ENST00000349038 HMGXB3Q12766 1538 aa21.72■■□□□ 1.07
PTBP1-201ENST00000349038 DDX10Q13206 875 aaKnown RBP21.66■■□□□ 1.06
PTBP1-201ENST00000349038 CLSPNQ9HAW4 1339 aa21.66■■□□□ 1.06
PTBP1-201ENST00000349038 MSH5O43196 834 aa21.63■■□□□ 1.05
PTBP1-201ENST00000349038 NBR1Q14596 966 aa21.63■■□□□ 1.05
PTBP1-201ENST00000349038 DHX57Q6P158 1386 aaKnown RBP21.6■■□□□ 1.05
PTBP1-201ENST00000349038 TOP2BQ02880 1626 aa21.57■■□□□ 1.04
PTBP1-201ENST00000349038 ANO8Q9HCE9 1232 aaPredicted RBP21.55■■□□□ 1.04
PTBP1-201ENST00000349038 ERICH3Q5RHP9 1530 aa21.53■■□□□ 1.04
PTBP1-201ENST00000349038 ARAP1Q96P48 1450 aa21.52■■□□□ 1.04
PTBP1-201ENST00000349038 RTN4Q9NQC3 1192 aaKnown RBP21.51■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms