RNA–Protein interactions for RNA: ENST00000330045.11

BRCC3-201, Transcript of BRCA1/BRCA2-containing complex subunit 3, humanhuman

TSL 1 (best) BASIC

Gene BRCC3, Length 2,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCC3-201ENST00000330045 NISCHQ9Y2I1 1504 aa32.3■■■□□ 2.76
BRCC3-201ENST00000330045 CCDC180Q9P1Z9 1646 aa27.85■■■□□ 2.05
BRCC3-201ENST00000330045 ZCCHC6Q5VYS8 1495 aaKnown RBP27.17■■□□□ 1.94
BRCC3-201ENST00000330045 DCAF8L2P0C7V8 631 aa26.97■■□□□ 1.91
BRCC3-201ENST00000330045 SHROOM4Q9ULL8 1493 aa26.97■■□□□ 1.91
BRCC3-201ENST00000330045 ABCC9O60706 1549 aa26.55■■□□□ 1.84
BRCC3-201ENST00000330045 SUPT5HO00267 1087 aaKnown RBP26.52■■□□□ 1.84
BRCC3-201ENST00000330045 DCAF1Q9Y4B6 1507 aa26.49■■□□□ 1.83
BRCC3-201ENST00000330045 MYO15BQ96JP2 1530 aa26.03■■□□□ 1.76
BRCC3-201ENST00000330045 SCRIBQ14160 1630 aa25.99■■□□□ 1.75
BRCC3-201ENST00000330045 NACADO15069 1562 aa25.93■■□□□ 1.74
BRCC3-201ENST00000330045 CHIC1Q5VXU3 224 aa25.86■■□□□ 1.73
BRCC3-201ENST00000330045 RB1CC1Q8TDY2 1594 aa25.7■■□□□ 1.7
BRCC3-201ENST00000330045 UNC13AQ9UPW8 1703 aa25.34■■□□□ 1.65
BRCC3-201ENST00000330045 CECR2Q9BXF3 1484 aa25.29■■□□□ 1.64
BRCC3-201ENST00000330045 RSF1Q96T23 1441 aaPredicted RBP25.24■■□□□ 1.63
BRCC3-201ENST00000330045 HRCP23327 699 aa25.22■■□□□ 1.63
BRCC3-201ENST00000330045 PABPN1Q86U42 306 aaKnown RBP eCLIP25.21■■□□□ 1.63
BRCC3-201ENST00000330045 PCGF6Q9BYE7 350 aa25.13■■□□□ 1.61
BRCC3-201ENST00000330045 MROH2BQ7Z745 1585 aa25.1■■□□□ 1.61
BRCC3-201ENST00000330045 BICRAQ9NZM4 1560 aa25.09■■□□□ 1.61
BRCC3-201ENST00000330045 LOC105371045A0A1W2PR82 267 aa25.07■■□□□ 1.6
BRCC3-201ENST00000330045 WIZO95785 1651 aa24.92■■□□□ 1.58
BRCC3-201ENST00000330045 BAZ1AQ9NRL2 1556 aaPredicted RBP24.85■■□□□ 1.57
BRCC3-201ENST00000330045 SMARCA4P51532 1647 aa24.78■■□□□ 1.56
BRCC3-201ENST00000330045 TRIM41Q8WV44 630 aa24.73■■□□□ 1.55
BRCC3-201ENST00000330045 TRIM26Q12899 539 aaPredicted RBP24.68■■□□□ 1.54
BRCC3-201ENST00000330045 PPARGC1BQ86YN6 1023 aaKnown RBP24.62■■□□□ 1.53
BRCC3-201ENST00000330045 TOP2AP11388 1531 aaKnown RBP24.49■■□□□ 1.51
BRCC3-201ENST00000330045 FAM9AQ8IZU1 332 aaPredicted RBP24.48■■□□□ 1.51
BRCC3-201ENST00000330045 CCDC88BA6NC98 1476 aa24.38■■□□□ 1.49
BRCC3-201ENST00000330045 EIF4G1Q04637 1599 aaKnown RBP24.37■■□□□ 1.49
BRCC3-201ENST00000330045 ATAD2BQ9ULI0 1458 aa24.35■■□□□ 1.49
BRCC3-201ENST00000330045 SMARCA2P51531 1590 aa24.35■■□□□ 1.49
BRCC3-201ENST00000330045 PEG3Q9GZU2 1588 aa24.35■■□□□ 1.49
BRCC3-201ENST00000330045 EHMT2Q96KQ7 1210 aa24.24■■□□□ 1.47
BRCC3-201ENST00000330045 BAZ1BQ9UIG0 1483 aaKnown RBP24.22■■□□□ 1.47
BRCC3-201ENST00000330045 ZEB1P37275 1124 aaPredicted RBP24.21■■□□□ 1.47
BRCC3-201ENST00000330045 ABCC8Q09428 1581 aa24.06■■□□□ 1.44
BRCC3-201ENST00000330045 NCAPD3P42695 1498 aa24.02■■□□□ 1.43
BRCC3-201ENST00000330045 HMGXB3Q12766 1538 aa23.94■■□□□ 1.42
BRCC3-201ENST00000330045 CC2D2AQ9P2K1 1620 aa23.9■■□□□ 1.42
BRCC3-201ENST00000330045 WRNQ14191 1432 aaPredicted RBP eCLIP23.77■■□□□ 1.39
BRCC3-201ENST00000330045 SOGA1O94964 1423 aa23.76■■□□□ 1.39
BRCC3-201ENST00000330045 EEA1Q15075 1411 aa23.76■■□□□ 1.39
BRCC3-201ENST00000330045 CEP162Q5TB80 1403 aa23.7■■□□□ 1.38
BRCC3-201ENST00000330045 TNIKQ9UKE5 1360 aa23.7■■□□□ 1.38
BRCC3-201ENST00000330045 SYNJ1O43426 1573 aa23.67■■□□□ 1.38
BRCC3-201ENST00000330045 CSRNP3Q8WYN3 585 aa23.65■■□□□ 1.38
BRCC3-201ENST00000330045 RUSC2Q8N2Y8 1516 aa23.64■■□□□ 1.37
BRCC3-201ENST00000330045 DNAJC5BQ9UF47 199 aa23.64■■□□□ 1.37
BRCC3-201ENST00000330045 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.63■■□□□ 1.37
BRCC3-201ENST00000330045 CCER1Q8TC90 406 aaPredicted RBP23.6■■□□□ 1.37
BRCC3-201ENST00000330045 CFTRP13569 1480 aa23.59■■□□□ 1.37
BRCC3-201ENST00000330045 GOLGA3Q08378 1498 aa23.56■■□□□ 1.36
BRCC3-201ENST00000330045 UBTFP17480 764 aaKnown RBP23.54■■□□□ 1.36
BRCC3-201ENST00000330045 TTBK1Q5TCY1 1321 aaPredicted RBP23.49■■□□□ 1.35
BRCC3-201ENST00000330045 CADPSQ9ULU8 1353 aa23.48■■□□□ 1.35
BRCC3-201ENST00000330045 KIF21BO75037 1637 aa23.45■■□□□ 1.34
BRCC3-201ENST00000330045 CEP164Q9UPV0 1460 aa23.43■■□□□ 1.34
BRCC3-201ENST00000330045 NESP48681 1621 aa23.42■■□□□ 1.34
BRCC3-201ENST00000330045 TOP2BQ02880 1626 aa23.42■■□□□ 1.34
BRCC3-201ENST00000330045 CUX1P39880 1505 aa23.42■■□□□ 1.34
BRCC3-201ENST00000330045 BIVM-ERCC5R4GMW8 1640 aa23.35■■□□□ 1.33
BRCC3-201ENST00000330045 PRDM2Q13029 1718 aa23.33■■□□□ 1.33
BRCC3-201ENST00000330045 FANCD2Q9BXW9 1451 aa23.26■■□□□ 1.31
BRCC3-201ENST00000330045 SCAF1Q9H7N4 1312 aaKnown RBP23.25■■□□□ 1.31
BRCC3-201ENST00000330045 CLIP1P30622 1438 aa23.25■■□□□ 1.31
BRCC3-201ENST00000330045 RAPGEF2Q9Y4G8 1499 aa23.21■■□□□ 1.31
BRCC3-201ENST00000330045 VPS8Q8N3P4 1428 aa23.19■■□□□ 1.3
BRCC3-201ENST00000330045 DIEXFQ68CQ4 756 aaKnown RBP23.19■■□□□ 1.3
BRCC3-201ENST00000330045 FGD5Q6ZNL6 1462 aa23.12■■□□□ 1.29
BRCC3-201ENST00000330045 LAMC3Q9Y6N6 1575 aa23.11■■□□□ 1.29
BRCC3-201ENST00000330045 ERICH3Q5RHP9 1530 aa23.07■■□□□ 1.28
BRCC3-201ENST00000330045 APLP2Q06481 763 aa23.07■■□□□ 1.28
BRCC3-201ENST00000330045 ACIN1Q9UKV3 1341 aaKnown RBP23.05■■□□□ 1.28
BRCC3-201ENST00000330045 HNRNPUL2Q1KMD3 747 aaKnown RBP23.05■■□□□ 1.28
BRCC3-201ENST00000330045 PRXQ9BXM0 1461 aa23.04■■□□□ 1.28
BRCC3-201ENST00000330045 TOPBP1Q92547 1522 aa23.03■■□□□ 1.28
BRCC3-201ENST00000330045 KIF27Q86VH2 1401 aa23.03■■□□□ 1.28
BRCC3-201ENST00000330045 CUX2O14529 1486 aa23.03■■□□□ 1.28
BRCC3-201ENST00000330045 RANGAP1P46060 587 aaPredicted RBP23.02■■□□□ 1.28
BRCC3-201ENST00000330045 RAD54L2Q9Y4B4 1467 aa23.01■■□□□ 1.27
BRCC3-201ENST00000330045 ZNF316A6NFI3 1004 aaPredicted RBP23.01■■□□□ 1.27
BRCC3-201ENST00000330045 URB2Q14146 1524 aaKnown RBP23.01■■□□□ 1.27
BRCC3-201ENST00000330045 DNMBPQ6XZF7 1577 aa23■■□□□ 1.27
BRCC3-201ENST00000330045 KIF21AQ7Z4S6 1674 aa22.99■■□□□ 1.27
BRCC3-201ENST00000330045 NEUROD1Q13562 356 aa22.99■■□□□ 1.27
BRCC3-201ENST00000330045 PDS5BQ9NTI5 1447 aa22.97■■□□□ 1.27
BRCC3-201ENST00000330045 POLA1P09884 1462 aaPredicted RBP22.96■■□□□ 1.27
BRCC3-201ENST00000330045 CENPBP07199 599 aaPredicted RBP22.94■■□□□ 1.26
BRCC3-201ENST00000330045 PELP1Q8IZL8 1130 aaKnown RBP22.93■■□□□ 1.26
BRCC3-201ENST00000330045 ARAP1Q96P48 1450 aa22.91■■□□□ 1.26
BRCC3-201ENST00000330045 IGF1RP08069 1367 aa22.91■■□□□ 1.26
BRCC3-201ENST00000330045 ABCA10Q8WWZ4 1543 aa22.81■■□□□ 1.24
BRCC3-201ENST00000330045 TDRD9Q8NDG6 1382 aaKnown RBP22.78■■□□□ 1.24
BRCC3-201ENST00000330045 GTF3C3Q9Y5Q9 886 aa22.77■■□□□ 1.24
BRCC3-201ENST00000330045 CARMIL1Q5VZK9 1371 aa22.77■■□□□ 1.24
BRCC3-201ENST00000330045 KANK4Q5T7N3 995 aaPredicted RBP22.72■■□□□ 1.23
BRCC3-201ENST00000330045 WDR97A6NE52 1622 aa22.7■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 227.8 ms