RNA–Protein interactions for RNA: ENST00000439274.6

APP-208, Transcript of amyloid beta precursor protein, humanhuman

TSL 1 (best) BASIC

Gene APP, Length 2,517 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APP-208ENST00000439274 NISCHQ9Y2I1 1504 aa31.65■■■□□ 2.66
APP-208ENST00000439274 CCDC180Q9P1Z9 1646 aa27.52■■■□□ 2
APP-208ENST00000439274 SHROOM4Q9ULL8 1493 aa27.13■■□□□ 1.93
APP-208ENST00000439274 ZCCHC6Q5VYS8 1495 aaKnown RBP26.66■■□□□ 1.86
APP-208ENST00000439274 SUPT5HO00267 1087 aaKnown RBP26.66■■□□□ 1.86
APP-208ENST00000439274 DCAF8L2P0C7V8 631 aa26.21■■□□□ 1.79
APP-208ENST00000439274 DCAF1Q9Y4B6 1507 aa26.11■■□□□ 1.77
APP-208ENST00000439274 ABCC9O60706 1549 aa25.94■■□□□ 1.74
APP-208ENST00000439274 MYO15BQ96JP2 1530 aa25.94■■□□□ 1.74
APP-208ENST00000439274 CHIC1Q5VXU3 224 aa25.94■■□□□ 1.74
APP-208ENST00000439274 NACADO15069 1562 aa25.55■■□□□ 1.68
APP-208ENST00000439274 SCRIBQ14160 1630 aa25.41■■□□□ 1.66
APP-208ENST00000439274 HRCP23327 699 aa25.4■■□□□ 1.66
APP-208ENST00000439274 PCGF6Q9BYE7 350 aa25.35■■□□□ 1.65
APP-208ENST00000439274 RB1CC1Q8TDY2 1594 aa25.31■■□□□ 1.64
APP-208ENST00000439274 LOC105371045A0A1W2PR82 267 aa25.25■■□□□ 1.63
APP-208ENST00000439274 RSF1Q96T23 1441 aaPredicted RBP25.02■■□□□ 1.6
APP-208ENST00000439274 PPARGC1BQ86YN6 1023 aaKnown RBP24.97■■□□□ 1.59
APP-208ENST00000439274 UNC13AQ9UPW8 1703 aa24.97■■□□□ 1.59
APP-208ENST00000439274 TRIM41Q8WV44 630 aa24.75■■□□□ 1.55
APP-208ENST00000439274 TRIM26Q12899 539 aaPredicted RBP24.74■■□□□ 1.55
APP-208ENST00000439274 BICRAQ9NZM4 1560 aa24.67■■□□□ 1.54
APP-208ENST00000439274 CECR2Q9BXF3 1484 aa24.66■■□□□ 1.54
APP-208ENST00000439274 FAM9AQ8IZU1 332 aaPredicted RBP24.66■■□□□ 1.54
APP-208ENST00000439274 MROH2BQ7Z745 1585 aa24.54■■□□□ 1.52
APP-208ENST00000439274 EHMT2Q96KQ7 1210 aa24.52■■□□□ 1.52
APP-208ENST00000439274 PABPN1Q86U42 306 aaKnown RBP eCLIP24.48■■□□□ 1.51
APP-208ENST00000439274 WIZO95785 1651 aa24.43■■□□□ 1.5
APP-208ENST00000439274 BAZ1AQ9NRL2 1556 aaPredicted RBP24.39■■□□□ 1.5
APP-208ENST00000439274 SMARCA4P51532 1647 aa24.33■■□□□ 1.49
APP-208ENST00000439274 ZEB1P37275 1124 aaPredicted RBP24.21■■□□□ 1.47
APP-208ENST00000439274 EIF4G1Q04637 1599 aaKnown RBP24.13■■□□□ 1.45
APP-208ENST00000439274 TOP2AP11388 1531 aaKnown RBP24.03■■□□□ 1.44
APP-208ENST00000439274 PEG3Q9GZU2 1588 aa23.99■■□□□ 1.43
APP-208ENST00000439274 ABCC8Q09428 1581 aa23.97■■□□□ 1.43
APP-208ENST00000439274 CCDC88BA6NC98 1476 aa23.93■■□□□ 1.42
APP-208ENST00000439274 SMARCA2P51531 1590 aa23.88■■□□□ 1.41
APP-208ENST00000439274 ATAD2BQ9ULI0 1458 aa23.87■■□□□ 1.41
APP-208ENST00000439274 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.82■■□□□ 1.4
APP-208ENST00000439274 SOGA1O94964 1423 aa23.78■■□□□ 1.4
APP-208ENST00000439274 TTBK1Q5TCY1 1321 aaPredicted RBP23.76■■□□□ 1.39
APP-208ENST00000439274 CCER1Q8TC90 406 aaPredicted RBP23.72■■□□□ 1.39
APP-208ENST00000439274 BAZ1BQ9UIG0 1483 aaKnown RBP23.71■■□□□ 1.39
APP-208ENST00000439274 CEP162Q5TB80 1403 aa23.71■■□□□ 1.39
APP-208ENST00000439274 RUSC2Q8N2Y8 1516 aa23.67■■□□□ 1.38
APP-208ENST00000439274 WRNQ14191 1432 aaPredicted RBP eCLIP23.66■■□□□ 1.38
APP-208ENST00000439274 TNIKQ9UKE5 1360 aa23.61■■□□□ 1.37
APP-208ENST00000439274 CSRNP3Q8WYN3 585 aa23.61■■□□□ 1.37
APP-208ENST00000439274 HMGXB3Q12766 1538 aa23.6■■□□□ 1.37
APP-208ENST00000439274 NCAPD3P42695 1498 aa23.59■■□□□ 1.37
APP-208ENST00000439274 UBTFP17480 764 aaKnown RBP23.58■■□□□ 1.36
APP-208ENST00000439274 SCAF1Q9H7N4 1312 aaKnown RBP23.56■■□□□ 1.36
APP-208ENST00000439274 EEA1Q15075 1411 aa23.54■■□□□ 1.36
APP-208ENST00000439274 CC2D2AQ9P2K1 1620 aa23.48■■□□□ 1.35
APP-208ENST00000439274 GOLGA3Q08378 1498 aa23.46■■□□□ 1.35
APP-208ENST00000439274 SYNJ1O43426 1573 aa23.39■■□□□ 1.34
APP-208ENST00000439274 DIEXFQ68CQ4 756 aaKnown RBP23.33■■□□□ 1.33
APP-208ENST00000439274 CEP164Q9UPV0 1460 aa23.3■■□□□ 1.32
APP-208ENST00000439274 KIF21BO75037 1637 aa23.25■■□□□ 1.31
APP-208ENST00000439274 NEUROD1Q13562 356 aa23.24■■□□□ 1.31
APP-208ENST00000439274 ACIN1Q9UKV3 1341 aaKnown RBP23.24■■□□□ 1.31
APP-208ENST00000439274 CLIP1P30622 1438 aa23.23■■□□□ 1.31
APP-208ENST00000439274 HNRNPUL2Q1KMD3 747 aaKnown RBP23.19■■□□□ 1.3
APP-208ENST00000439274 RAPGEF2Q9Y4G8 1499 aa23.17■■□□□ 1.3
APP-208ENST00000439274 RANGAP1P46060 587 aaPredicted RBP23.17■■□□□ 1.3
APP-208ENST00000439274 CFTRP13569 1480 aa23.13■■□□□ 1.29
APP-208ENST00000439274 VPS8Q8N3P4 1428 aa23.12■■□□□ 1.29
APP-208ENST00000439274 ZNF316A6NFI3 1004 aaPredicted RBP23.1■■□□□ 1.29
APP-208ENST00000439274 PRDM2Q13029 1718 aa23.07■■□□□ 1.28
APP-208ENST00000439274 PELP1Q8IZL8 1130 aaKnown RBP23.07■■□□□ 1.28
APP-208ENST00000439274 TOP2BQ02880 1626 aa23.03■■□□□ 1.28
APP-208ENST00000439274 CENPBP07199 599 aaPredicted RBP23.03■■□□□ 1.28
APP-208ENST00000439274 APLP2Q06481 763 aa23.03■■□□□ 1.28
APP-208ENST00000439274 GTF3C3Q9Y5Q9 886 aa23.01■■□□□ 1.27
APP-208ENST00000439274 CADPSQ9ULU8 1353 aa22.99■■□□□ 1.27
APP-208ENST00000439274 BIVM-ERCC5R4GMW8 1640 aa22.96■■□□□ 1.27
APP-208ENST00000439274 DNAJC5BQ9UF47 199 aa22.95■■□□□ 1.26
APP-208ENST00000439274 CUX1P39880 1505 aa22.92■■□□□ 1.26
APP-208ENST00000439274 YTHDC1Q96MU7 727 aaKnown RBP22.87■■□□□ 1.25
APP-208ENST00000439274 NESP48681 1621 aa22.87■■□□□ 1.25
APP-208ENST00000439274 PRXQ9BXM0 1461 aa22.87■■□□□ 1.25
APP-208ENST00000439274 ARAP1Q96P48 1450 aa22.85■■□□□ 1.25
APP-208ENST00000439274 MIER1Q8N108 512 aa22.84■■□□□ 1.25
APP-208ENST00000439274 ERICH3Q5RHP9 1530 aa22.84■■□□□ 1.25
APP-208ENST00000439274 KANK4Q5T7N3 995 aaPredicted RBP22.79■■□□□ 1.24
APP-208ENST00000439274 FANCD2Q9BXW9 1451 aa22.78■■□□□ 1.24
APP-208ENST00000439274 LAMC3Q9Y6N6 1575 aa22.77■■□□□ 1.24
APP-208ENST00000439274 KIF27Q86VH2 1401 aa22.73■■□□□ 1.23
APP-208ENST00000439274 DHX57Q6P158 1386 aaKnown RBP22.7■■□□□ 1.22
APP-208ENST00000439274 ARHGAP35Q9NRY4 1499 aa22.61■■□□□ 1.21
APP-208ENST00000439274 DNMBPQ6XZF7 1577 aa22.61■■□□□ 1.21
APP-208ENST00000439274 FGD5Q6ZNL6 1462 aa22.61■■□□□ 1.21
APP-208ENST00000439274 KIF21AQ7Z4S6 1674 aa22.6■■□□□ 1.21
APP-208ENST00000439274 RRBP1Q9P2E9 1410 aaKnown RBP22.6■■□□□ 1.21
APP-208ENST00000439274 CLSPNQ9HAW4 1339 aa22.59■■□□□ 1.21
APP-208ENST00000439274 TOPBP1Q92547 1522 aa22.57■■□□□ 1.2
APP-208ENST00000439274 URB2Q14146 1524 aaKnown RBP22.54■■□□□ 1.2
APP-208ENST00000439274 ITGAEP38570 1179 aa22.54■■□□□ 1.2
APP-208ENST00000439274 PDS5BQ9NTI5 1447 aa22.53■■□□□ 1.2
APP-208ENST00000439274 CCNB3Q8WWL7 1395 aa22.53■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms