Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 NCAPD2-213ENST00000545732 543 ntTSL 55.97□□□□□ -1.451e-8■□□□□ 10.3
YBX3P16989 SUPT20H-207ENST00000469488 1313 ntTSL 511.13□□□□□ -0.634e-8■□□□□ 10.3
YBX3P16989 SUPT20H-217ENST00000484078 1876 ntTSL 1 (best)7.03□□□□□ -1.284e-8■□□□□ 10.3
YBX3P16989 NEU1-208ENST00000491768 1875 ntTSL 521.98■■□□□ 1.112e-7■□□□□ 10.3
YBX3P16989 NEU1-207ENST00000480384 2214 ntTSL 219.05■□□□□ 0.642e-7■□□□□ 10.3
YBX3P16989 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.632e-7■□□□□ 10.3
YBX3P16989 NEU1-209ENST00000495807 4616 ntTSL 213.4□□□□□ -0.262e-7■□□□□ 10.3
YBX3P16989 AES-203ENST00000585557 491 ntTSL 537.75■■■■□ 3.639e-16■□□□□ 10.3
YBX3P16989 SEC61A1-206ENST00000491668 558 ntTSL 417.06■□□□□ 0.325e-10■□□□□ 10.3
YBX3P16989 KLHDC8B-203ENST00000462582 832 ntTSL 522.29■■□□□ 1.161e-6■□□□□ 10.3
YBX3P16989 SLC12A4-210ENST00000572476 573 ntTSL 519.82■□□□□ 0.762e-6■□□□□ 10.3
YBX3P16989 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC19.54■□□□□ 0.722e-6■□□□□ 10.3
YBX3P16989 SLC12A4-212ENST00000573023 3649 ntTSL 519.3■□□□□ 0.682e-6■□□□□ 10.3
YBX3P16989 SLC12A4-213ENST00000573702 633 ntTSL 419.09■□□□□ 0.652e-6■□□□□ 10.3
YBX3P16989 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.562e-6■□□□□ 10.3
YBX3P16989 SLC12A4-211ENST00000572766 515 ntTSL 417.11■□□□□ 0.332e-6■□□□□ 10.3
YBX3P16989 SLC12A4-214ENST00000574665 847 ntTSL 516.26■□□□□ 0.192e-6■□□□□ 10.3
YBX3P16989 SLC12A4-209ENST00000572037 3620 ntTSL 2 BASIC13.25□□□□□ -0.292e-6■□□□□ 10.3
YBX3P16989 SLC12A4-203ENST00000537830 3525 ntTSL 2 BASIC12.74□□□□□ -0.372e-6■□□□□ 10.3
YBX3P16989 SLC12A4-206ENST00000570802 3761 ntTSL 211.89□□□□□ -0.512e-6■□□□□ 10.3
YBX3P16989 SLC12A4-219ENST00000576616 3768 ntTSL 2 BASIC11.89□□□□□ -0.512e-6■□□□□ 10.3
YBX3P16989 SLC12A4-204ENST00000541864 3627 ntTSL 2 BASIC11.84□□□□□ -0.512e-6■□□□□ 10.3
YBX3P16989 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC25.53■■□□□ 1.681e-6■□□□□ 10.3
YBX3P16989 C11orf98-203ENST00000532786 774 ntTSL 223.1■■□□□ 1.291e-6■□□□□ 10.3
YBX3P16989 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC21.21■□□□□ 0.991e-6■□□□□ 10.3
YBX3P16989 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.971e-6■□□□□ 10.3
YBX3P16989 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.961e-6■□□□□ 10.3
YBX3P16989 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC19.96■□□□□ 0.791e-6■□□□□ 10.3
YBX3P16989 VAC14-208ENST00000566655 1391 ntTSL 518.47■□□□□ 0.551e-6■□□□□ 10.3
YBX3P16989 LBHD1-203ENST00000415855 821 ntAPPRIS ALT2 TSL 317.27■□□□□ 0.361e-6■□□□□ 10.3
YBX3P16989 LBHD1-204ENST00000431002 2915 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.21e-6■□□□□ 10.3
YBX3P16989 RPAIN-210ENST00000571613 1688 ntTSL 222.03■■□□□ 1.121e-7■□□□□ 10.3
YBX3P16989 RPAIN-208ENST00000571043 1547 ntTSL 220.53■□□□□ 0.881e-7■□□□□ 10.3
YBX3P16989 RPAIN-206ENST00000539417 1471 ntTSL 220.26■□□□□ 0.831e-7■□□□□ 10.3
YBX3P16989 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.661e-7■□□□□ 10.3
YBX3P16989 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC19.14■□□□□ 0.651e-7■□□□□ 10.3
YBX3P16989 RPAIN-209ENST00000571558 1423 ntTSL 218.83■□□□□ 0.61e-7■□□□□ 10.3
YBX3P16989 RPAIN-213ENST00000573577 1282 ntTSL 217.56■□□□□ 0.41e-7■□□□□ 10.3
YBX3P16989 RPAIN-205ENST00000536255 1057 ntTSL 1 (best) BASIC17.56■□□□□ 0.41e-7■□□□□ 10.3
YBX3P16989 RPAIN-202ENST00000381208 1394 ntTSL 1 (best) BASIC17.5■□□□□ 0.391e-7■□□□□ 10.3
YBX3P16989 RPAIN-216ENST00000575599 1359 ntTSL 217.23■□□□□ 0.351e-7■□□□□ 10.3
YBX3P16989 RPAIN-212ENST00000573126 2728 ntTSL 211.46□□□□□ -0.581e-7■□□□□ 10.3
YBX3P16989 LIN54-208ENST00000509748 729 ntTSL 528.43■■■□□ 2.147e-8■□□□□ 10.3
YBX3P16989 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC19.33■□□□□ 0.687e-8■□□□□ 10.3
YBX3P16989 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.537e-8■□□□□ 10.3
YBX3P16989 LIN54-210ENST00000510877 4507 ntTSL 1 (best)14.77□□□□□ -0.047e-8■□□□□ 10.3
YBX3P16989 LIN54-201ENST00000340417 6127 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.27e-8■□□□□ 10.3
YBX3P16989 LIN54-206ENST00000506560 2757 ntTSL 1 (best) BASIC13.56□□□□□ -0.247e-8■□□□□ 10.3
YBX3P16989 LIN54-203ENST00000446851 4083 ntTSL 1 (best) BASIC12.64□□□□□ -0.397e-8■□□□□ 10.3
YBX3P16989 LIN54-207ENST00000508171 2684 ntTSL 1 (best)11.23□□□□□ -0.617e-8■□□□□ 10.3
YBX3P16989 LIN54-202ENST00000442461 4254 ntTSL 1 (best) BASIC10.19□□□□□ -0.787e-8■□□□□ 10.3
YBX3P16989 KRT19-202ENST00000455635 641 ntTSL 325.03■■□□□ 1.65e-8■□□□□ 10.3
YBX3P16989 KRT19-206ENST00000479031 427 ntTSL 219.73■□□□□ 0.755e-8■□□□□ 10.3
YBX3P16989 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC6.43□□□□□ -1.382e-6■□□□□ 10.3
YBX3P16989 MBNL1-221ENST00000495875 545 ntTSL 210.48□□□□□ -0.731e-8■□□□□ 10.3
YBX3P16989 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.632e-7■□□□□ 10.3
YBX3P16989 CHD8-209ENST00000555935 2617 ntTSL 57.96□□□□□ -1.143e-7■□□□□ 10.3
YBX3P16989 APOBEC3C-202ENST00000428892 1056 ntTSL 315.02■□□□□ -06e-11■□□□□ 10.3
YBX3P16989 AL022318.4-201ENST00000381568 2121 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.676e-11■□□□□ 10.3
YBX3P16989 APOBEC3C-201ENST00000361441 2818 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.716e-11■□□□□ 10.3
YBX3P16989 KMT2A-206ENST00000527869 481 ntTSL 324.59■■□□□ 1.534e-8■□□□□ 10.3
YBX3P16989 KMT2A-211ENST00000533790 804 ntTSL 224.53■■□□□ 1.524e-8■□□□□ 10.3
YBX3P16989 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC22.51■■□□□ 1.196e-9■□□□□ 10.3
YBX3P16989 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.154e-8■□□□□ 10.3
YBX3P16989 PRICKLE3-203ENST00000432913 990 ntTSL 520.32■□□□□ 0.841e-8■□□□□ 10.3
YBX3P16989 KMT2A-209ENST00000531904 4320 ntTSL 218.94■□□□□ 0.624e-8■□□□□ 10.3
YBX3P16989 PRICKLE3-201ENST00000376310 806 ntTSL 217.99■□□□□ 0.471e-8■□□□□ 10.3
YBX3P16989 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC17.65■□□□□ 0.424e-8■□□□□ 10.3
YBX3P16989 HDAC7-217ENST00000459625 6414 ntTSL 216.33■□□□□ 0.22e-7■□□□□ 10.3
YBX3P16989 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.156e-9■□□□□ 10.3
YBX3P16989 SLC2A14-205ENST00000535295 1732 ntTSL 2 BASIC15.43■□□□□ 0.066e-9■□□□□ 10.3
YBX3P16989 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -04e-8■□□□□ 10.3
YBX3P16989 ORAI1-201ENST00000611718 852 ntTSL 5 BASIC14.62□□□□□ -0.074e-8■□□□□ 10.3
YBX3P16989 HDAC7-219ENST00000470668 4266 ntTSL 214.32□□□□□ -0.122e-7■□□□□ 10.3
YBX3P16989 SLC2A14-213ENST00000539924 1873 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.136e-9■□□□□ 10.3
YBX3P16989 HDAC7-228ENST00000548938 2719 ntTSL 514.09□□□□□ -0.152e-7■□□□□ 10.3
YBX3P16989 HDAC7-201ENST00000080059 4095 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.242e-7■□□□□ 10.3
YBX3P16989 HDAC7-202ENST00000354334 4065 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.242e-7■□□□□ 10.3
YBX3P16989 PIGT-238ENST00000639194 439 ntTSL 513.28□□□□□ -0.289e-12■□□□□ 10.3
YBX3P16989 SLC2A14-215ENST00000542546 3120 ntTSL 5 BASIC10.86□□□□□ -0.676e-9■□□□□ 10.3
YBX3P16989 SLC2A14-201ENST00000340749 3699 ntAPPRIS ALT2 TSL 2 BASIC8.14□□□□□ -1.116e-9■□□□□ 10.3
YBX3P16989 SLC2A14-203ENST00000431042 3458 ntAPPRIS ALT2 TSL 1 (best) BASIC8.05□□□□□ -1.126e-9■□□□□ 10.3
YBX3P16989 SLC2A14-221ENST00000616981 3366 ntAPPRIS P3 TSL 5 BASIC7.91□□□□□ -1.146e-9■□□□□ 10.3
YBX3P16989 PPP1CC-210ENST00000553024 2797 ntTSL 27.8□□□□□ -1.164e-8■□□□□ 10.3
YBX3P16989 SLC2A14-218ENST00000543909 4125 ntAPPRIS P3 TSL 1 (best) BASIC7.22□□□□□ -1.256e-9■□□□□ 10.3
YBX3P16989 ETF1-203ENST00000503014 1736 ntTSL 2 BASIC6.86□□□□□ -1.314e-8■□□□□ 10.3
YBX3P16989 ANKHD1-209ENST00000431508 4079 ntTSL 26.78□□□□□ -1.327e-7■□□□□ 10.3
YBX3P16989 PPP1CC-207ENST00000551582 563 ntTSL 45.88□□□□□ -1.474e-8■□□□□ 10.3
YBX3P16989 GPS1-209ENST00000578642 579 ntTSL 425.67■■□□□ 1.77e-10■□□□□ 10.3
YBX3P16989 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC26.67■■□□□ 1.868e-8■□□□□ 10.3
YBX3P16989 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.558e-8■□□□□ 10.3
YBX3P16989 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC19.26■□□□□ 0.678e-8■□□□□ 10.3
YBX3P16989 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC17.11■□□□□ 0.338e-8■□□□□ 10.3
YBX3P16989 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.82e-8■□□□□ 10.3
YBX3P16989 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC19.85■□□□□ 0.772e-8■□□□□ 10.3
YBX3P16989 CFL1-209ENST00000530413 647 ntTSL 1 (best)21.13■□□□□ 0.972e-9■□□□□ 10.3
YBX3P16989 CAT-202ENST00000525707 562 ntTSL 211.75□□□□□ -0.532e-9■□□□□ 10.3
YBX3P16989 CAT-204ENST00000530343 752 ntTSL 29.16□□□□□ -0.942e-9■□□□□ 10.3
YBX3P16989 CCNG1-206ENST00000509425 759 ntTSL 37.98□□□□□ -1.136e-9■□□□□ 10.3
YBX3P16989 CCNG1-205ENST00000509143 562 ntTSL 26.38□□□□□ -1.396e-9■□□□□ 10.3
Retrieved 100 of 29,075 protein–RNA pairs in 193.6 ms