RNA–Protein interactions for RNA: ENST00000446851.6

LIN54-203, Transcript of lin-54 DREAM MuvB core complex component, humanhuman

TSL 1 (best) BASIC

Gene LIN54, Length 4,083 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIN54-203ENST00000446851 NISCHQ9Y2I1 1504 aa23.06■■□□□ 1.28
LIN54-203ENST00000446851 DCAF8L2P0C7V8 631 aa20.61■□□□□ 0.89
LIN54-203ENST00000446851 ABCC9O60706 1549 aa20.24■□□□□ 0.83
LIN54-203ENST00000446851 CCDC180Q9P1Z9 1646 aa19.93■□□□□ 0.78
LIN54-203ENST00000446851 SHROOM4Q9ULL8 1493 aa19.43■□□□□ 0.7
LIN54-203ENST00000446851 PABPN1Q86U42 306 aaKnown RBP eCLIP19.3■□□□□ 0.68
LIN54-203ENST00000446851 ZCCHC6Q5VYS8 1495 aaKnown RBP19.14■□□□□ 0.66
LIN54-203ENST00000446851 RB1CC1Q8TDY2 1594 aa19.05■□□□□ 0.64
LIN54-203ENST00000446851 NACADO15069 1562 aa18.96■□□□□ 0.63
LIN54-203ENST00000446851 SCRIBQ14160 1630 aa18.89■□□□□ 0.62
LIN54-203ENST00000446851 DCAF1Q9Y4B6 1507 aa18.67■□□□□ 0.58
LIN54-203ENST00000446851 SUPT5HO00267 1087 aaKnown RBP18.6■□□□□ 0.57
LIN54-203ENST00000446851 MYO15BQ96JP2 1530 aa18.57■□□□□ 0.56
LIN54-203ENST00000446851 DNAJC5BQ9UF47 199 aa18.35■□□□□ 0.53
LIN54-203ENST00000446851 BICRAQ9NZM4 1560 aa18.26■□□□□ 0.51
LIN54-203ENST00000446851 UNC13AQ9UPW8 1703 aa18.25■□□□□ 0.51
LIN54-203ENST00000446851 CECR2Q9BXF3 1484 aa18.2■□□□□ 0.5
LIN54-203ENST00000446851 EIF4G1Q04637 1599 aaKnown RBP17.98■□□□□ 0.47
LIN54-203ENST00000446851 MROH2BQ7Z745 1585 aa17.91■□□□□ 0.46
LIN54-203ENST00000446851 CC2D2AQ9P2K1 1620 aa17.88■□□□□ 0.45
LIN54-203ENST00000446851 BAZ1AQ9NRL2 1556 aaPredicted RBP17.87■□□□□ 0.45
LIN54-203ENST00000446851 RSF1Q96T23 1441 aaPredicted RBP17.85■□□□□ 0.45
LIN54-203ENST00000446851 BAZ1BQ9UIG0 1483 aaKnown RBP17.81■□□□□ 0.44
LIN54-203ENST00000446851 ATAD2BQ9ULI0 1458 aa17.77■□□□□ 0.44
LIN54-203ENST00000446851 SMARCA4P51532 1647 aa17.76■□□□□ 0.43
LIN54-203ENST00000446851 WIZO95785 1651 aa17.69■□□□□ 0.42
LIN54-203ENST00000446851 SMARCA2P51531 1590 aa17.66■□□□□ 0.42
LIN54-203ENST00000446851 NCAPD3P42695 1498 aa17.59■□□□□ 0.41
LIN54-203ENST00000446851 ERCC6Q03468 1493 aa17.52■□□□□ 0.39
LIN54-203ENST00000446851 NESP48681 1621 aa17.45■□□□□ 0.38
LIN54-203ENST00000446851 EHMT2Q96KQ7 1210 aa17.45■□□□□ 0.38
LIN54-203ENST00000446851 CCDC88BA6NC98 1476 aa17.41■□□□□ 0.38
LIN54-203ENST00000446851 TOP2AP11388 1531 aaKnown RBP17.37■□□□□ 0.37
LIN54-203ENST00000446851 CADPSQ9ULU8 1353 aa17.36■□□□□ 0.37
LIN54-203ENST00000446851 HMGXB3Q12766 1538 aa17.35■□□□□ 0.37
LIN54-203ENST00000446851 FAM9AQ8IZU1 332 aaPredicted RBP17.35■□□□□ 0.37
LIN54-203ENST00000446851 TRIM41Q8WV44 630 aa17.32■□□□□ 0.36
LIN54-203ENST00000446851 PDS5BQ9NTI5 1447 aa17.28■□□□□ 0.36
LIN54-203ENST00000446851 PEG3Q9GZU2 1588 aa17.25■□□□□ 0.35
LIN54-203ENST00000446851 FBLN2P98095 1184 aa17.21■□□□□ 0.35
LIN54-203ENST00000446851 FANCD2Q9BXW9 1451 aa17.17■□□□□ 0.34
LIN54-203ENST00000446851 CEP164Q9UPV0 1460 aa17.12■□□□□ 0.33
LIN54-203ENST00000446851 RANGAP1P46060 587 aaPredicted RBP17.11■□□□□ 0.33
LIN54-203ENST00000446851 CFTRP13569 1480 aa17.09■□□□□ 0.33
LIN54-203ENST00000446851 CHIC1Q5VXU3 224 aa17.02■□□□□ 0.32
LIN54-203ENST00000446851 LAMC3Q9Y6N6 1575 aa17.02■□□□□ 0.31
LIN54-203ENST00000446851 TTBK1Q5TCY1 1321 aaPredicted RBP17■□□□□ 0.31
LIN54-203ENST00000446851 ABCC8Q09428 1581 aa17■□□□□ 0.31
LIN54-203ENST00000446851 WRNQ14191 1432 aaPredicted RBP eCLIP16.98■□□□□ 0.31
LIN54-203ENST00000446851 TDRD9Q8NDG6 1382 aaKnown RBP16.96■□□□□ 0.31
LIN54-203ENST00000446851 MRC2Q9UBG0 1479 aa16.92■□□□□ 0.3
LIN54-203ENST00000446851 SOGA1O94964 1423 aa16.89■□□□□ 0.29
LIN54-203ENST00000446851 CHMP7Q8WUX9 453 aaPredicted RBP16.87■□□□□ 0.29
LIN54-203ENST00000446851 RAD54L2Q9Y4B4 1467 aa16.86■□□□□ 0.29
LIN54-203ENST00000446851 KIF21AQ7Z4S6 1674 aa16.86■□□□□ 0.29
LIN54-203ENST00000446851 UBTFP17480 764 aaKnown RBP16.84■□□□□ 0.29
LIN54-203ENST00000446851 URB2Q14146 1524 aaKnown RBP16.83■□□□□ 0.29
LIN54-203ENST00000446851 TOPBP1Q92547 1522 aa16.81■□□□□ 0.28
LIN54-203ENST00000446851 AQRO60306 1485 aaKnown RBP eCLIP16.8■□□□□ 0.28
LIN54-203ENST00000446851 FGD5Q6ZNL6 1462 aa16.79■□□□□ 0.28
LIN54-203ENST00000446851 CUX2O14529 1486 aa16.77■□□□□ 0.28
LIN54-203ENST00000446851 CUX1P39880 1505 aa16.73■□□□□ 0.27
LIN54-203ENST00000446851 POLA1P09884 1462 aaPredicted RBP16.73■□□□□ 0.27
LIN54-203ENST00000446851 ZNF608Q9ULD9 1512 aaPredicted RBP16.7■□□□□ 0.26
LIN54-203ENST00000446851 ATP1B4Q9UN42 357 aaPredicted RBP16.7■□□□□ 0.26
LIN54-203ENST00000446851 LOC105371045A0A1W2PR82 267 aa16.68■□□□□ 0.26
LIN54-203ENST00000446851 CSRNP3Q8WYN3 585 aa16.68■□□□□ 0.26
LIN54-203ENST00000446851 DNMBPQ6XZF7 1577 aa16.66■□□□□ 0.26
LIN54-203ENST00000446851 SYNJ1O43426 1573 aa16.66■□□□□ 0.26
LIN54-203ENST00000446851 P3H3Q8IVL6 736 aa16.64■□□□□ 0.25
LIN54-203ENST00000446851 OSCARQ8IYS5 282 aa16.64■□□□□ 0.25
LIN54-203ENST00000446851 KIF27Q86VH2 1401 aa16.63■□□□□ 0.25
LIN54-203ENST00000446851 IFT140Q96RY7 1462 aa16.63■□□□□ 0.25
LIN54-203ENST00000446851 WDR62O43379 1518 aa16.6■□□□□ 0.25
LIN54-203ENST00000446851 THOC2Q8NI27 1593 aaKnown RBP16.59■□□□□ 0.25
LIN54-203ENST00000446851 GAPVD1Q14C86 1478 aa16.59■□□□□ 0.25
LIN54-203ENST00000446851 RUSC2Q8N2Y8 1516 aa16.57■□□□□ 0.24
LIN54-203ENST00000446851 ARID3CA6NKF2 412 aa16.57■□□□□ 0.24
LIN54-203ENST00000446851 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.52■□□□□ 0.24
LIN54-203ENST00000446851 HNRNPUL2Q1KMD3 747 aaKnown RBP16.52■□□□□ 0.24
LIN54-203ENST00000446851 CARMIL1Q5VZK9 1371 aa16.52■□□□□ 0.24
LIN54-203ENST00000446851 TOP2BQ02880 1626 aa16.5■□□□□ 0.23
LIN54-203ENST00000446851 CYB5RLQ6IPT4 315 aa16.49■□□□□ 0.23
LIN54-203ENST00000446851 SNAPC4Q5SXM2 1469 aa16.48■□□□□ 0.23
LIN54-203ENST00000446851 GRIN2BQ13224 1484 aa16.47■□□□□ 0.23
LIN54-203ENST00000446851 PRDM2Q13029 1718 aa16.46■□□□□ 0.23
LIN54-203ENST00000446851 IGF1RP08069 1367 aa16.46■□□□□ 0.23
LIN54-203ENST00000446851 ABCA10Q8WWZ4 1543 aa16.42■□□□□ 0.22
LIN54-203ENST00000446851 JPH4Q96JJ6 628 aa16.39■□□□□ 0.21
LIN54-203ENST00000446851 EIF4G3O43432 1585 aaKnown RBP16.37■□□□□ 0.21
LIN54-203ENST00000446851 BIVM-ERCC5R4GMW8 1640 aa16.33■□□□□ 0.2
LIN54-203ENST00000446851 FHAD1B1AJZ9 1412 aa16.33■□□□□ 0.2
LIN54-203ENST00000446851 TARBP1Q13395 1621 aaKnown RBP16.32■□□□□ 0.2
LIN54-203ENST00000446851 PPARGC1BQ86YN6 1023 aaKnown RBP16.31■□□□□ 0.2
LIN54-203ENST00000446851 TRHP20396 242 aaPredicted RBP16.31■□□□□ 0.2
LIN54-203ENST00000446851 NPM1P06748 294 aaKnown RBP eCLIP16.3■□□□□ 0.2
LIN54-203ENST00000446851 APLP2Q06481 763 aa16.3■□□□□ 0.2
LIN54-203ENST00000446851 SYNJ2O15056 1496 aa16.28■□□□□ 0.2
LIN54-203ENST00000446851 DNAJC5Q9H3Z4 198 aa16.28■□□□□ 0.2
LIN54-203ENST00000446851 RAPGEF2Q9Y4G8 1499 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms