RNA–Protein interactions for RNA: ENST00000575599.5

RPAIN-216, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,359 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-216ENST00000575599 NISCHQ9Y2I1 1504 aa32.26■■■□□ 2.75
RPAIN-216ENST00000575599 AEBP2Q6ZN18 517 aaPredicted RBP31.46■■■□□ 2.63
RPAIN-216ENST00000575599 CHIC1Q5VXU3 224 aa29.56■■■□□ 2.32
RPAIN-216ENST00000575599 CCDC180Q9P1Z9 1646 aa28.71■■■□□ 2.19
RPAIN-216ENST00000575599 ABCC9O60706 1549 aa28.2■■■□□ 2.1
RPAIN-216ENST00000575599 SENP3Q9H4L4 574 aaPredicted RBP27.16■■□□□ 1.94
RPAIN-216ENST00000575599 RB1CC1Q8TDY2 1594 aa27.06■■□□□ 1.92
RPAIN-216ENST00000575599 DCAF8L2P0C7V8 631 aa27.03■■□□□ 1.92
RPAIN-216ENST00000575599 NACADO15069 1562 aa26.99■■□□□ 1.91
RPAIN-216ENST00000575599 ZCCHC6Q5VYS8 1495 aaKnown RBP26.87■■□□□ 1.89
RPAIN-216ENST00000575599 MYO15BQ96JP2 1530 aa26.77■■□□□ 1.88
RPAIN-216ENST00000575599 DCAF1Q9Y4B6 1507 aa26.65■■□□□ 1.86
RPAIN-216ENST00000575599 PHF23Q9BUL5 403 aaPredicted RBP26.61■■□□□ 1.85
RPAIN-216ENST00000575599 UNC13AQ9UPW8 1703 aa26.47■■□□□ 1.83
RPAIN-216ENST00000575599 PABPN1Q86U42 306 aaKnown RBP eCLIP26.33■■□□□ 1.8
RPAIN-216ENST00000575599 SCRIBQ14160 1630 aa26.26■■□□□ 1.79
RPAIN-216ENST00000575599 BICRAQ9NZM4 1560 aa26.24■■□□□ 1.79
RPAIN-216ENST00000575599 SHROOM4Q9ULL8 1493 aa25.92■■□□□ 1.74
RPAIN-216ENST00000575599 DNAJC5BQ9UF47 199 aa25.88■■□□□ 1.73
RPAIN-216ENST00000575599 EIF4G1Q04637 1599 aaKnown RBP25.57■■□□□ 1.68
RPAIN-216ENST00000575599 CC2D2AQ9P2K1 1620 aa25.49■■□□□ 1.67
RPAIN-216ENST00000575599 POTEDQ86YR6 584 aa25.36■■□□□ 1.65
RPAIN-216ENST00000575599 FOXD1Q16676 465 aa25.34■■□□□ 1.65
RPAIN-216ENST00000575599 CECR2Q9BXF3 1484 aa25.32■■□□□ 1.64
RPAIN-216ENST00000575599 SMARCA4P51532 1647 aa25.06■■□□□ 1.6
RPAIN-216ENST00000575599 BAZ1AQ9NRL2 1556 aaPredicted RBP25.01■■□□□ 1.59
RPAIN-216ENST00000575599 ATAD2BQ9ULI0 1458 aa24.92■■□□□ 1.58
RPAIN-216ENST00000575599 SMARCA2P51531 1590 aa24.89■■□□□ 1.58
RPAIN-216ENST00000575599 NCAPD3P42695 1498 aa24.89■■□□□ 1.57
RPAIN-216ENST00000575599 MROH2BQ7Z745 1585 aa24.88■■□□□ 1.57
RPAIN-216ENST00000575599 HMGXB3Q12766 1538 aa24.79■■□□□ 1.56
RPAIN-216ENST00000575599 PEG3Q9GZU2 1588 aa24.79■■□□□ 1.56
RPAIN-216ENST00000575599 BAZ1BQ9UIG0 1483 aaKnown RBP24.74■■□□□ 1.55
RPAIN-216ENST00000575599 WIZO95785 1651 aa24.63■■□□□ 1.53
RPAIN-216ENST00000575599 RSF1Q96T23 1441 aaPredicted RBP24.55■■□□□ 1.52
RPAIN-216ENST00000575599 NESP48681 1621 aa24.37■■□□□ 1.49
RPAIN-216ENST00000575599 TOP2AP11388 1531 aaKnown RBP24.35■■□□□ 1.49
RPAIN-216ENST00000575599 ERCC6Q03468 1493 aa24.31■■□□□ 1.48
RPAIN-216ENST00000575599 LAMC3Q9Y6N6 1575 aa24.27■■□□□ 1.48
RPAIN-216ENST00000575599 MSH5O43196 834 aa24.25■■□□□ 1.47
RPAIN-216ENST00000575599 CADPSQ9ULU8 1353 aa24.18■■□□□ 1.46
RPAIN-216ENST00000575599 PDS5BQ9NTI5 1447 aa24.1■■□□□ 1.45
RPAIN-216ENST00000575599 KIF21AQ7Z4S6 1674 aa24.1■■□□□ 1.45
RPAIN-216ENST00000575599 CCDC88BA6NC98 1476 aa24.05■■□□□ 1.44
RPAIN-216ENST00000575599 CUX2O14529 1486 aa24.03■■□□□ 1.44
RPAIN-216ENST00000575599 CFTRP13569 1480 aa24.02■■□□□ 1.44
RPAIN-216ENST00000575599 THOC2Q8NI27 1593 aaKnown RBP24.01■■□□□ 1.43
RPAIN-216ENST00000575599 SUPT5HO00267 1087 aaKnown RBP23.94■■□□□ 1.42
RPAIN-216ENST00000575599 FANCD2Q9BXW9 1451 aa23.93■■□□□ 1.42
RPAIN-216ENST00000575599 CEP164Q9UPV0 1460 aa23.92■■□□□ 1.42
RPAIN-216ENST00000575599 MRC2Q9UBG0 1479 aa23.89■■□□□ 1.41
RPAIN-216ENST00000575599 PRDM2Q13029 1718 aa23.88■■□□□ 1.41
RPAIN-216ENST00000575599 WDR62O43379 1518 aa23.81■■□□□ 1.4
RPAIN-216ENST00000575599 URB2Q14146 1524 aaKnown RBP23.7■■□□□ 1.38
RPAIN-216ENST00000575599 TOPBP1Q92547 1522 aa23.54■■□□□ 1.36
RPAIN-216ENST00000575599 DNMBPQ6XZF7 1577 aa23.51■■□□□ 1.35
RPAIN-216ENST00000575599 ABCC8Q09428 1581 aa23.5■■□□□ 1.35
RPAIN-216ENST00000575599 PIAS4Q8N2W9 510 aaPredicted RBP23.49■■□□□ 1.35
RPAIN-216ENST00000575599 IFT140Q96RY7 1462 aa23.4■■□□□ 1.34
RPAIN-216ENST00000575599 CUX1P39880 1505 aa23.34■■□□□ 1.33
RPAIN-216ENST00000575599 POLA1P09884 1462 aaPredicted RBP23.34■■□□□ 1.33
RPAIN-216ENST00000575599 DNAJC5Q9H3Z4 198 aa23.33■■□□□ 1.33
RPAIN-216ENST00000575599 ZNF608Q9ULD9 1512 aaPredicted RBP23.32■■□□□ 1.32
RPAIN-216ENST00000575599 FGD5Q6ZNL6 1462 aa23.28■■□□□ 1.32
RPAIN-216ENST00000575599 TARBP1Q13395 1621 aaKnown RBP23.27■■□□□ 1.32
RPAIN-216ENST00000575599 RAD54L2Q9Y4B4 1467 aa23.25■■□□□ 1.31
RPAIN-216ENST00000575599 EIF4G3O43432 1585 aaKnown RBP23.24■■□□□ 1.31
RPAIN-216ENST00000575599 SOGA1O94964 1423 aa23.23■■□□□ 1.31
RPAIN-216ENST00000575599 AQRO60306 1485 aaKnown RBP eCLIP23.17■■□□□ 1.33e-7■■■□□ 18.2
RPAIN-216ENST00000575599 WRNQ14191 1432 aaPredicted RBP eCLIP23.17■■□□□ 1.3
RPAIN-216ENST00000575599 SYNJ1O43426 1573 aa23.14■■□□□ 1.3
RPAIN-216ENST00000575599 TOP2BQ02880 1626 aa23.12■■□□□ 1.29
RPAIN-216ENST00000575599 BIVM-ERCC5R4GMW8 1640 aa23.12■■□□□ 1.29
RPAIN-216ENST00000575599 TDRD9Q8NDG6 1382 aaKnown RBP23.12■■□□□ 1.29
RPAIN-216ENST00000575599 WDR97A6NE52 1622 aa23.1■■□□□ 1.29
RPAIN-216ENST00000575599 ABCA10Q8WWZ4 1543 aa23.03■■□□□ 1.28
RPAIN-216ENST00000575599 OSCARQ8IYS5 282 aa23.01■■□□□ 1.27
RPAIN-216ENST00000575599 SNAPC4Q5SXM2 1469 aa22.98■■□□□ 1.27
RPAIN-216ENST00000575599 ABCA5Q8WWZ7 1642 aa22.97■■□□□ 1.27
RPAIN-216ENST00000575599 CHD1O14646 1710 aa22.97■■□□□ 1.27
RPAIN-216ENST00000575599 GRIN2BQ13224 1484 aa22.96■■□□□ 1.27
RPAIN-216ENST00000575599 GAPVD1Q14C86 1478 aa22.96■■□□□ 1.27
RPAIN-216ENST00000575599 PBRM1Q86U86 1689 aa22.96■■□□□ 1.27
RPAIN-216ENST00000575599 FBLN2P98095 1184 aa22.93■■□□□ 1.26
RPAIN-216ENST00000575599 MAGI1Q96QZ7 1491 aaPredicted RBP22.91■■□□□ 1.26
RPAIN-216ENST00000575599 PPP6R1Q9UPN7 881 aa22.85■■□□□ 1.25
RPAIN-216ENST00000575599 CHMP7Q8WUX9 453 aaPredicted RBP22.83■■□□□ 1.25
RPAIN-216ENST00000575599 SYNJ2O15056 1496 aa22.83■■□□□ 1.24
RPAIN-216ENST00000575599 ADAMTS12P58397 1594 aa22.77■■□□□ 1.24
RPAIN-216ENST00000575599 ERICH3Q5RHP9 1530 aa22.75■■□□□ 1.23
RPAIN-216ENST00000575599 ADRA2BP18089 450 aa22.75■■□□□ 1.23
RPAIN-216ENST00000575599 PLPPR3Q6T4P5 718 aa22.71■■□□□ 1.23
RPAIN-216ENST00000575599 RIMBP3CA6NJZ7 1639 aa22.69■■□□□ 1.22
RPAIN-216ENST00000575599 RIMBP3BA6NNM3 1639 aa22.69■■□□□ 1.22
RPAIN-216ENST00000575599 RIMBP3Q9UFD9 1639 aa22.69■■□□□ 1.22
RPAIN-216ENST00000575599 FHAD1B1AJZ9 1412 aa22.69■■□□□ 1.22
RPAIN-216ENST00000575599 GRIN2AQ12879 1464 aa22.68■■□□□ 1.22
RPAIN-216ENST00000575599 KIF27Q86VH2 1401 aa22.68■■□□□ 1.22
RPAIN-216ENST00000575599 ARHGEF11O15085 1522 aa22.68■■□□□ 1.22
RPAIN-216ENST00000575599 CLASP1Q7Z460 1538 aa22.68■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 217.5 ms