RNA–Protein interactions for RNA: ENST00000573126.1

RPAIN-212, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 2,728 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-212ENST00000573126 NISCHQ9Y2I1 1504 aa23.32■■□□□ 1.32
RPAIN-212ENST00000573126 SHROOM4Q9ULL8 1493 aa19.99■□□□□ 0.79
RPAIN-212ENST00000573126 CCDC180Q9P1Z9 1646 aa19.76■□□□□ 0.75
RPAIN-212ENST00000573126 ZCCHC6Q5VYS8 1495 aaKnown RBP19.72■□□□□ 0.75
RPAIN-212ENST00000573126 SUPT5HO00267 1087 aaKnown RBP19.6■□□□□ 0.73
RPAIN-212ENST00000573126 DCAF8L2P0C7V8 631 aa19.5■□□□□ 0.71
RPAIN-212ENST00000573126 DCAF1Q9Y4B6 1507 aa19.08■□□□□ 0.64
RPAIN-212ENST00000573126 CHIC1Q5VXU3 224 aa18.98■□□□□ 0.63
RPAIN-212ENST00000573126 MYO15BQ96JP2 1530 aa18.89■□□□□ 0.62
RPAIN-212ENST00000573126 SCRIBQ14160 1630 aa18.62■□□□□ 0.57
RPAIN-212ENST00000573126 ABCC9O60706 1549 aa18.59■□□□□ 0.57
RPAIN-212ENST00000573126 RSF1Q96T23 1441 aaPredicted RBP18.48■□□□□ 0.55
RPAIN-212ENST00000573126 LOC105371045A0A1W2PR82 267 aa18.46■□□□□ 0.55
RPAIN-212ENST00000573126 PCGF6Q9BYE7 350 aa18.41■□□□□ 0.54
RPAIN-212ENST00000573126 HRCP23327 699 aa18.33■□□□□ 0.53
RPAIN-212ENST00000573126 NACADO15069 1562 aa18.32■□□□□ 0.52
RPAIN-212ENST00000573126 RB1CC1Q8TDY2 1594 aa18.28■□□□□ 0.52
RPAIN-212ENST00000573126 CECR2Q9BXF3 1484 aa18.25■□□□□ 0.51
RPAIN-212ENST00000573126 TRIM41Q8WV44 630 aa18.22■□□□□ 0.51
RPAIN-212ENST00000573126 MROH2BQ7Z745 1585 aa18.16■□□□□ 0.5
RPAIN-212ENST00000573126 FAM9AQ8IZU1 332 aaPredicted RBP18.12■□□□□ 0.49
RPAIN-212ENST00000573126 WIZO95785 1651 aa18.04■□□□□ 0.48
RPAIN-212ENST00000573126 PPARGC1BQ86YN6 1023 aaKnown RBP18.02■□□□□ 0.48
RPAIN-212ENST00000573126 EHMT2Q96KQ7 1210 aa18.01■□□□□ 0.47
RPAIN-212ENST00000573126 TRIM26Q12899 539 aaPredicted RBP18■□□□□ 0.47
RPAIN-212ENST00000573126 BAZ1AQ9NRL2 1556 aaPredicted RBP17.91■□□□□ 0.46
RPAIN-212ENST00000573126 SMARCA4P51532 1647 aa17.75■□□□□ 0.43
RPAIN-212ENST00000573126 EIF4G1Q04637 1599 aaKnown RBP17.74■□□□□ 0.43
RPAIN-212ENST00000573126 TOP2AP11388 1531 aaKnown RBP17.74■□□□□ 0.43
RPAIN-212ENST00000573126 UNC13AQ9UPW8 1703 aa17.73■□□□□ 0.43
RPAIN-212ENST00000573126 PABPN1Q86U42 306 aaKnown RBP eCLIP17.71■□□□□ 0.43
RPAIN-212ENST00000573126 CCDC88BA6NC98 1476 aa17.7■□□□□ 0.42
RPAIN-212ENST00000573126 ABCC8Q09428 1581 aa17.67■□□□□ 0.42
RPAIN-212ENST00000573126 SMARCA2P51531 1590 aa17.65■□□□□ 0.42
RPAIN-212ENST00000573126 BICRAQ9NZM4 1560 aa17.56■□□□□ 0.4
RPAIN-212ENST00000573126 ZEB1P37275 1124 aaPredicted RBP17.56■□□□□ 0.4
RPAIN-212ENST00000573126 SOGA1O94964 1423 aa17.51■□□□□ 0.39
RPAIN-212ENST00000573126 RUSC2Q8N2Y8 1516 aa17.42■□□□□ 0.38
RPAIN-212ENST00000573126 TTBK1Q5TCY1 1321 aaPredicted RBP17.42■□□□□ 0.38
RPAIN-212ENST00000573126 CEP162Q5TB80 1403 aa17.41■□□□□ 0.38
RPAIN-212ENST00000573126 CSRNP3Q8WYN3 585 aa17.41■□□□□ 0.38
RPAIN-212ENST00000573126 PEG3Q9GZU2 1588 aa17.39■□□□□ 0.37
RPAIN-212ENST00000573126 UBTFP17480 764 aaKnown RBP17.38■□□□□ 0.37
RPAIN-212ENST00000573126 WRNQ14191 1432 aaPredicted RBP eCLIP17.37■□□□□ 0.37
RPAIN-212ENST00000573126 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.36■□□□□ 0.37
RPAIN-212ENST00000573126 TNIKQ9UKE5 1360 aa17.35■□□□□ 0.37
RPAIN-212ENST00000573126 EEA1Q15075 1411 aa17.34■□□□□ 0.37
RPAIN-212ENST00000573126 ATAD2BQ9ULI0 1458 aa17.34■□□□□ 0.37
RPAIN-212ENST00000573126 BAZ1BQ9UIG0 1483 aaKnown RBP17.3■□□□□ 0.36
RPAIN-212ENST00000573126 CCER1Q8TC90 406 aaPredicted RBP17.29■□□□□ 0.36
RPAIN-212ENST00000573126 SYNJ1O43426 1573 aa17.26■□□□□ 0.35
RPAIN-212ENST00000573126 GOLGA3Q08378 1498 aa17.25■□□□□ 0.35
RPAIN-212ENST00000573126 CEP164Q9UPV0 1460 aa17.16■□□□□ 0.34
RPAIN-212ENST00000573126 RANGAP1P46060 587 aaPredicted RBP17.1■□□□□ 0.33
RPAIN-212ENST00000573126 KIF21BO75037 1637 aa17.09■□□□□ 0.33
RPAIN-212ENST00000573126 CLIP1P30622 1438 aa17.09■□□□□ 0.33
RPAIN-212ENST00000573126 RAPGEF2Q9Y4G8 1499 aa17.08■□□□□ 0.32
RPAIN-212ENST00000573126 TOP2BQ02880 1626 aa17.02■□□□□ 0.32
RPAIN-212ENST00000573126 VPS8Q8N3P4 1428 aa16.99■□□□□ 0.31
RPAIN-212ENST00000573126 NCAPD3P42695 1498 aa16.99■□□□□ 0.31
RPAIN-212ENST00000573126 HNRNPUL2Q1KMD3 747 aaKnown RBP16.98■□□□□ 0.31
RPAIN-212ENST00000573126 APLP2Q06481 763 aa16.96■□□□□ 0.3
RPAIN-212ENST00000573126 HMGXB3Q12766 1538 aa16.95■□□□□ 0.3
RPAIN-212ENST00000573126 BIVM-ERCC5R4GMW8 1640 aa16.92■□□□□ 0.3
RPAIN-212ENST00000573126 DIEXFQ68CQ4 756 aaKnown RBP16.91■□□□□ 0.3
RPAIN-212ENST00000573126 CUX1P39880 1505 aa16.9■□□□□ 0.3
RPAIN-212ENST00000573126 SCAF1Q9H7N4 1312 aaKnown RBP16.88■□□□□ 0.29
RPAIN-212ENST00000573126 PRXQ9BXM0 1461 aa16.88■□□□□ 0.29
RPAIN-212ENST00000573126 CFTRP13569 1480 aa16.86■□□□□ 0.29
RPAIN-212ENST00000573126 ERICH3Q5RHP9 1530 aa16.84■□□□□ 0.29
RPAIN-212ENST00000573126 KIF27Q86VH2 1401 aa16.83■□□□□ 0.28
RPAIN-212ENST00000573126 ARAP1Q96P48 1450 aa16.79■□□□□ 0.28
RPAIN-212ENST00000573126 ZNF316A6NFI3 1004 aaPredicted RBP16.77■□□□□ 0.28
RPAIN-212ENST00000573126 KANK4Q5T7N3 995 aaPredicted RBP16.76■□□□□ 0.27
RPAIN-212ENST00000573126 NEUROD1Q13562 356 aa16.74■□□□□ 0.27
RPAIN-212ENST00000573126 ACIN1Q9UKV3 1341 aaKnown RBP16.72■□□□□ 0.27
RPAIN-212ENST00000573126 CUX2O14529 1486 aa16.69■□□□□ 0.26
RPAIN-212ENST00000573126 CADPSQ9ULU8 1353 aa16.69■□□□□ 0.26
RPAIN-212ENST00000573126 ARHGAP35Q9NRY4 1499 aa16.66■□□□□ 0.26
RPAIN-212ENST00000573126 IGF1RP08069 1367 aa16.66■□□□□ 0.26
RPAIN-212ENST00000573126 CENPBP07199 599 aaPredicted RBP16.63■□□□□ 0.25
RPAIN-212ENST00000573126 FGD5Q6ZNL6 1462 aa16.61■□□□□ 0.25
RPAIN-212ENST00000573126 PRDM2Q13029 1718 aa16.6■□□□□ 0.25
RPAIN-212ENST00000573126 CARMIL1Q5VZK9 1371 aa16.59■□□□□ 0.25
RPAIN-212ENST00000573126 DHX57Q6P158 1386 aaKnown RBP16.59■□□□□ 0.25
RPAIN-212ENST00000573126 CC2D2AQ9P2K1 1620 aa16.58■□□□□ 0.24
RPAIN-212ENST00000573126 RRBP1Q9P2E9 1410 aaKnown RBP16.57■□□□□ 0.24
RPAIN-212ENST00000573126 ITGAEP38570 1179 aa16.57■□□□□ 0.24
RPAIN-212ENST00000573126 YTHDC1Q96MU7 727 aaKnown RBP16.57■□□□□ 0.24
RPAIN-212ENST00000573126 MIER1Q8N108 512 aa16.56■□□□□ 0.24
RPAIN-212ENST00000573126 GTF3C3Q9Y5Q9 886 aa16.56■□□□□ 0.24
RPAIN-212ENST00000573126 CCNB3Q8WWL7 1395 aa16.55■□□□□ 0.24
RPAIN-212ENST00000573126 FANCD2Q9BXW9 1451 aa16.53■□□□□ 0.24
RPAIN-212ENST00000573126 CLSPNQ9HAW4 1339 aa16.52■□□□□ 0.23
RPAIN-212ENST00000573126 P3H3Q8IVL6 736 aa16.5■□□□□ 0.23
RPAIN-212ENST00000573126 RAD54L2Q9Y4B4 1467 aa16.48■□□□□ 0.23
RPAIN-212ENST00000573126 NESP48681 1621 aa16.46■□□□□ 0.23
RPAIN-212ENST00000573126 ATP1B4Q9UN42 357 aaPredicted RBP16.45■□□□□ 0.22
RPAIN-212ENST00000573126 TIAM1Q13009 1591 aa16.45■□□□□ 0.22
RPAIN-212ENST00000573126 POLA1P09884 1462 aaPredicted RBP16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 108.7 ms