RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 NISCHQ9Y2I1 1504 aa38.22■■■■□ 3.71
RPAIN-206ENST00000539417 CCDC180Q9P1Z9 1646 aa33.86■■■■□ 3.01
RPAIN-206ENST00000539417 ABCC9O60706 1549 aa33.16■■■□□ 2.9
RPAIN-206ENST00000539417 DCAF8L2P0C7V8 631 aa31.92■■■□□ 2.7
RPAIN-206ENST00000539417 ZCCHC6Q5VYS8 1495 aaKnown RBP31.87■■■□□ 2.69
RPAIN-206ENST00000539417 RB1CC1Q8TDY2 1594 aa31.83■■■□□ 2.69
RPAIN-206ENST00000539417 NACADO15069 1562 aa31.8■■■□□ 2.68
RPAIN-206ENST00000539417 MYO15BQ96JP2 1530 aa31.62■■■□□ 2.65
RPAIN-206ENST00000539417 DCAF1Q9Y4B6 1507 aa31.56■■■□□ 2.64
RPAIN-206ENST00000539417 UNC13AQ9UPW8 1703 aa31.23■■■□□ 2.59
RPAIN-206ENST00000539417 PABPN1Q86U42 306 aaKnown RBP eCLIP31.03■■■□□ 2.56
RPAIN-206ENST00000539417 SCRIBQ14160 1630 aa31.03■■■□□ 2.56
RPAIN-206ENST00000539417 BICRAQ9NZM4 1560 aa30.99■■■□□ 2.55
RPAIN-206ENST00000539417 SHROOM4Q9ULL8 1493 aa30.45■■■□□ 2.46
RPAIN-206ENST00000539417 DNAJC5BQ9UF47 199 aa30.43■■■□□ 2.46
RPAIN-206ENST00000539417 EIF4G1Q04637 1599 aaKnown RBP30.1■■■□□ 2.41
RPAIN-206ENST00000539417 CC2D2AQ9P2K1 1620 aa29.97■■■□□ 2.39
RPAIN-206ENST00000539417 CECR2Q9BXF3 1484 aa29.86■■■□□ 2.37
RPAIN-206ENST00000539417 SMARCA4P51532 1647 aa29.64■■■□□ 2.34
RPAIN-206ENST00000539417 BAZ1AQ9NRL2 1556 aaPredicted RBP29.57■■■□□ 2.32
RPAIN-206ENST00000539417 MROH2BQ7Z745 1585 aa29.53■■■□□ 2.32
RPAIN-206ENST00000539417 ATAD2BQ9ULI0 1458 aa29.45■■■□□ 2.31
RPAIN-206ENST00000539417 NCAPD3P42695 1498 aa29.39■■■□□ 2.29
RPAIN-206ENST00000539417 SMARCA2P51531 1590 aa29.35■■■□□ 2.29
RPAIN-206ENST00000539417 PEG3Q9GZU2 1588 aa29.31■■■□□ 2.28
RPAIN-206ENST00000539417 HMGXB3Q12766 1538 aa29.23■■■□□ 2.27
RPAIN-206ENST00000539417 WIZO95785 1651 aa29.22■■■□□ 2.27
RPAIN-206ENST00000539417 RSF1Q96T23 1441 aaPredicted RBP29.2■■■□□ 2.26
RPAIN-206ENST00000539417 BAZ1BQ9UIG0 1483 aaKnown RBP29.19■■■□□ 2.26
RPAIN-206ENST00000539417 TOP2AP11388 1531 aaKnown RBP28.84■■■□□ 2.21
RPAIN-206ENST00000539417 NESP48681 1621 aa28.76■■■□□ 2.2
RPAIN-206ENST00000539417 SUPT5HO00267 1087 aaKnown RBP28.58■■■□□ 2.17
RPAIN-206ENST00000539417 LAMC3Q9Y6N6 1575 aa28.56■■■□□ 2.16
RPAIN-206ENST00000539417 CCDC88BA6NC98 1476 aa28.55■■■□□ 2.16
RPAIN-206ENST00000539417 CADPSQ9ULU8 1353 aa28.53■■■□□ 2.16
RPAIN-206ENST00000539417 ERCC6Q03468 1493 aa28.48■■■□□ 2.15
RPAIN-206ENST00000539417 CFTRP13569 1480 aa28.4■■■□□ 2.14
RPAIN-206ENST00000539417 KIF21AQ7Z4S6 1674 aa28.39■■■□□ 2.13
RPAIN-206ENST00000539417 PDS5BQ9NTI5 1447 aa28.35■■■□□ 2.13
RPAIN-206ENST00000539417 THOC2Q8NI27 1593 aaKnown RBP28.24■■■□□ 2.11
RPAIN-206ENST00000539417 FANCD2Q9BXW9 1451 aa28.23■■■□□ 2.11
RPAIN-206ENST00000539417 PRDM2Q13029 1718 aa28.17■■■□□ 2.1
RPAIN-206ENST00000539417 CEP164Q9UPV0 1460 aa28.15■■■□□ 2.1
RPAIN-206ENST00000539417 CUX2O14529 1486 aa28.1■■■□□ 2.09
RPAIN-206ENST00000539417 MRC2Q9UBG0 1479 aa28.09■■■□□ 2.09
RPAIN-206ENST00000539417 WDR62O43379 1518 aa28.01■■■□□ 2.07
RPAIN-206ENST00000539417 URB2Q14146 1524 aaKnown RBP28■■■□□ 2.07
RPAIN-206ENST00000539417 TOPBP1Q92547 1522 aa27.81■■■□□ 2.04
RPAIN-206ENST00000539417 DNMBPQ6XZF7 1577 aa27.75■■■□□ 2.03
RPAIN-206ENST00000539417 ABCC8Q09428 1581 aa27.68■■■□□ 2.02
RPAIN-206ENST00000539417 CUX1P39880 1505 aa27.68■■■□□ 2.02
RPAIN-206ENST00000539417 POLA1P09884 1462 aaPredicted RBP27.58■■■□□ 2.01
RPAIN-206ENST00000539417 IFT140Q96RY7 1462 aa27.55■■■□□ 2
RPAIN-206ENST00000539417 ZNF608Q9ULD9 1512 aaPredicted RBP27.53■■■□□ 2
RPAIN-206ENST00000539417 FGD5Q6ZNL6 1462 aa27.53■■■□□ 2
RPAIN-206ENST00000539417 RAD54L2Q9Y4B4 1467 aa27.52■■■□□ 2
RPAIN-206ENST00000539417 TARBP1Q13395 1621 aaKnown RBP27.51■■□□□ 1.99
RPAIN-206ENST00000539417 SYNJ1O43426 1573 aa27.49■■□□□ 1.99
RPAIN-206ENST00000539417 WRNQ14191 1432 aaPredicted RBP eCLIP27.48■■□□□ 1.99
RPAIN-206ENST00000539417 SOGA1O94964 1423 aa27.45■■□□□ 1.98
RPAIN-206ENST00000539417 TOP2BQ02880 1626 aa27.41■■□□□ 1.98
RPAIN-206ENST00000539417 BIVM-ERCC5R4GMW8 1640 aa27.41■■□□□ 1.98
RPAIN-206ENST00000539417 EIF4G3O43432 1585 aaKnown RBP27.37■■□□□ 1.97
RPAIN-206ENST00000539417 AQRO60306 1485 aaKnown RBP eCLIP27.37■■□□□ 1.973e-7■■■□□ 18.2
RPAIN-206ENST00000539417 TDRD9Q8NDG6 1382 aaKnown RBP27.33■■□□□ 1.97
RPAIN-206ENST00000539417 WDR97A6NE52 1622 aa27.31■■□□□ 1.96
RPAIN-206ENST00000539417 ABCA10Q8WWZ4 1543 aa27.24■■□□□ 1.95
RPAIN-206ENST00000539417 DNAJC5Q9H3Z4 198 aa27.18■■□□□ 1.94
RPAIN-206ENST00000539417 ABCA5Q8WWZ7 1642 aa27.15■■□□□ 1.94
RPAIN-206ENST00000539417 GAPVD1Q14C86 1478 aa27.13■■□□□ 1.93
RPAIN-206ENST00000539417 SNAPC4Q5SXM2 1469 aa27.09■■□□□ 1.93
RPAIN-206ENST00000539417 PBRM1Q86U86 1689 aa27.09■■□□□ 1.93
RPAIN-206ENST00000539417 GRIN2BQ13224 1484 aa27.09■■□□□ 1.93
RPAIN-206ENST00000539417 CHD1O14646 1710 aa27.03■■□□□ 1.92
RPAIN-206ENST00000539417 MAGI1Q96QZ7 1491 aaPredicted RBP26.98■■□□□ 1.91
RPAIN-206ENST00000539417 FBLN2P98095 1184 aa26.98■■□□□ 1.91
RPAIN-206ENST00000539417 OSCARQ8IYS5 282 aa26.98■■□□□ 1.91
RPAIN-206ENST00000539417 TRIM41Q8WV44 630 aa26.9■■□□□ 1.9
RPAIN-206ENST00000539417 SYNJ2O15056 1496 aa26.9■■□□□ 1.9
RPAIN-206ENST00000539417 ERICH3Q5RHP9 1530 aa26.88■■□□□ 1.89
RPAIN-206ENST00000539417 ADAMTS12P58397 1594 aa26.88■■□□□ 1.89
RPAIN-206ENST00000539417 CHMP7Q8WUX9 453 aaPredicted RBP26.87■■□□□ 1.89
RPAIN-206ENST00000539417 KIF27Q86VH2 1401 aa26.86■■□□□ 1.89
RPAIN-206ENST00000539417 RUSC2Q8N2Y8 1516 aa26.83■■□□□ 1.89
RPAIN-206ENST00000539417 IGF1RP08069 1367 aa26.81■■□□□ 1.88
RPAIN-206ENST00000539417 FHAD1B1AJZ9 1412 aa26.8■■□□□ 1.88
RPAIN-206ENST00000539417 GRIN2AQ12879 1464 aa26.76■■□□□ 1.88
RPAIN-206ENST00000539417 CHIC1Q5VXU3 224 aa26.73■■□□□ 1.87
RPAIN-206ENST00000539417 CLASP1Q7Z460 1538 aa26.72■■□□□ 1.87
RPAIN-206ENST00000539417 CEP170Q5SW79 1584 aa26.68■■□□□ 1.86
RPAIN-206ENST00000539417 CUL7Q14999 1698 aa26.65■■□□□ 1.86
RPAIN-206ENST00000539417 NUP160Q12769 1436 aa26.64■■□□□ 1.86
RPAIN-206ENST00000539417 CARMIL1Q5VZK9 1371 aa26.62■■□□□ 1.85
RPAIN-206ENST00000539417 RIMBP3CA6NJZ7 1639 aa26.61■■□□□ 1.85
RPAIN-206ENST00000539417 RIMBP3BA6NNM3 1639 aa26.61■■□□□ 1.85
RPAIN-206ENST00000539417 RIMBP3Q9UFD9 1639 aa26.61■■□□□ 1.85
RPAIN-206ENST00000539417 ARHGEF11O15085 1522 aa26.6■■□□□ 1.85
RPAIN-206ENST00000539417 RAPGEF2Q9Y4G8 1499 aa26.46■■□□□ 1.83
RPAIN-206ENST00000539417 ERCC6L2Q5T890 1561 aa26.46■■□□□ 1.83
RPAIN-206ENST00000539417 FAM9AQ8IZU1 332 aaPredicted RBP26.45■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms