RNA–Protein interactions for RNA: ENST00000571558.5

RPAIN-209, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,423 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-209ENST00000571558 NISCHQ9Y2I1 1504 aa33.74■■■□□ 2.99
RPAIN-209ENST00000571558 ABCC9O60706 1549 aa30.83■■■□□ 2.53
RPAIN-209ENST00000571558 CCDC180Q9P1Z9 1646 aa30.47■■■□□ 2.47
RPAIN-209ENST00000571558 DNAJC5BQ9UF47 199 aa29.32■■■□□ 2.28
RPAIN-209ENST00000571558 RB1CC1Q8TDY2 1594 aa29.24■■■□□ 2.27
RPAIN-209ENST00000571558 NACADO15069 1562 aa28.96■■■□□ 2.23
RPAIN-209ENST00000571558 PABPN1Q86U42 306 aaKnown RBP eCLIP28.62■■■□□ 2.17
RPAIN-209ENST00000571558 DCAF8L2P0C7V8 631 aa28.61■■■□□ 2.17
RPAIN-209ENST00000571558 MYO15BQ96JP2 1530 aa28.49■■■□□ 2.15
RPAIN-209ENST00000571558 UNC13AQ9UPW8 1703 aa28.42■■■□□ 2.14
RPAIN-209ENST00000571558 BICRAQ9NZM4 1560 aa28.34■■■□□ 2.13
RPAIN-209ENST00000571558 SHROOM4Q9ULL8 1493 aa28.09■■■□□ 2.09
RPAIN-209ENST00000571558 DCAF1Q9Y4B6 1507 aa27.93■■■□□ 2.06
RPAIN-209ENST00000571558 CECR2Q9BXF3 1484 aa27.87■■■□□ 2.05
RPAIN-209ENST00000571558 ZCCHC6Q5VYS8 1495 aaKnown RBP27.85■■■□□ 2.05
RPAIN-209ENST00000571558 CC2D2AQ9P2K1 1620 aa27.84■■■□□ 2.05
RPAIN-209ENST00000571558 EIF4G1Q04637 1599 aaKnown RBP27.7■■■□□ 2.03
RPAIN-209ENST00000571558 SCRIBQ14160 1630 aa27.62■■■□□ 2.01
RPAIN-209ENST00000571558 DNAJC5Q9H3Z4 198 aa27.38■■□□□ 1.97
RPAIN-209ENST00000571558 CUX2O14529 1486 aa26.88■■□□□ 1.89
RPAIN-209ENST00000571558 NCAPD3P42695 1498 aa26.76■■□□□ 1.87
RPAIN-209ENST00000571558 ERCC6Q03468 1493 aa26.71■■□□□ 1.87
RPAIN-209ENST00000571558 ATAD2BQ9ULI0 1458 aa26.55■■□□□ 1.84
RPAIN-209ENST00000571558 HMGXB3Q12766 1538 aa26.49■■□□□ 1.83
RPAIN-209ENST00000571558 SMARCA2P51531 1590 aa26.49■■□□□ 1.83
RPAIN-209ENST00000571558 SMARCA4P51532 1647 aa26.37■■□□□ 1.81
RPAIN-209ENST00000571558 NESP48681 1621 aa26.33■■□□□ 1.8
RPAIN-209ENST00000571558 BAZ1BQ9UIG0 1483 aaKnown RBP26.27■■□□□ 1.8
RPAIN-209ENST00000571558 BAZ1AQ9NRL2 1556 aaPredicted RBP26.24■■□□□ 1.79
RPAIN-209ENST00000571558 PEG3Q9GZU2 1588 aa26.2■■□□□ 1.78
RPAIN-209ENST00000571558 LAMC3Q9Y6N6 1575 aa26.2■■□□□ 1.78
RPAIN-209ENST00000571558 THOC2Q8NI27 1593 aaKnown RBP26.18■■□□□ 1.78
RPAIN-209ENST00000571558 PDS5BQ9NTI5 1447 aa26.1■■□□□ 1.77
RPAIN-209ENST00000571558 KIF21AQ7Z4S6 1674 aa25.95■■□□□ 1.74
RPAIN-209ENST00000571558 MROH2BQ7Z745 1585 aa25.92■■□□□ 1.74
RPAIN-209ENST00000571558 CADPSQ9ULU8 1353 aa25.91■■□□□ 1.74
RPAIN-209ENST00000571558 TRIM41Q8WV44 630 aa25.86■■□□□ 1.73
RPAIN-209ENST00000571558 MRC2Q9UBG0 1479 aa25.83■■□□□ 1.73
RPAIN-209ENST00000571558 WDR62O43379 1518 aa25.78■■□□□ 1.72
RPAIN-209ENST00000571558 CEP164Q9UPV0 1460 aa25.64■■□□□ 1.69
RPAIN-209ENST00000571558 OSCARQ8IYS5 282 aa25.59■■□□□ 1.69
RPAIN-209ENST00000571558 FANCD2Q9BXW9 1451 aa25.56■■□□□ 1.68
RPAIN-209ENST00000571558 WIZO95785 1651 aa25.55■■□□□ 1.68
RPAIN-209ENST00000571558 CFTRP13569 1480 aa25.51■■□□□ 1.67
RPAIN-209ENST00000571558 URB2Q14146 1524 aaKnown RBP25.34■■□□□ 1.65
RPAIN-209ENST00000571558 TOP2AP11388 1531 aaKnown RBP25.28■■□□□ 1.64
RPAIN-209ENST00000571558 RSF1Q96T23 1441 aaPredicted RBP25.27■■□□□ 1.64
RPAIN-209ENST00000571558 IFT140Q96RY7 1462 aa25.17■■□□□ 1.62
RPAIN-209ENST00000571558 RIMBP3CA6NJZ7 1639 aa25.17■■□□□ 1.62
RPAIN-209ENST00000571558 RIMBP3BA6NNM3 1639 aa25.17■■□□□ 1.62
RPAIN-209ENST00000571558 RIMBP3Q9UFD9 1639 aa25.17■■□□□ 1.62
RPAIN-209ENST00000571558 PRDM2Q13029 1718 aa25.1■■□□□ 1.61
RPAIN-209ENST00000571558 ARHGEF11O15085 1522 aa25.09■■□□□ 1.61
RPAIN-209ENST00000571558 ZNF608Q9ULD9 1512 aaPredicted RBP25.08■■□□□ 1.61
RPAIN-209ENST00000571558 ABCC8Q09428 1581 aa25.05■■□□□ 1.6
RPAIN-209ENST00000571558 TOPBP1Q92547 1522 aa25.02■■□□□ 1.6
RPAIN-209ENST00000571558 CCDC88BA6NC98 1476 aa24.99■■□□□ 1.59
RPAIN-209ENST00000571558 CYB5RLQ6IPT4 315 aa24.95■■□□□ 1.58
RPAIN-209ENST00000571558 EIF4G3O43432 1585 aaKnown RBP24.93■■□□□ 1.58
RPAIN-209ENST00000571558 DNMBPQ6XZF7 1577 aa24.89■■□□□ 1.58
RPAIN-209ENST00000571558 AQRO60306 1485 aaKnown RBP eCLIP24.83■■□□□ 1.563e-7■■■□□ 18.2
RPAIN-209ENST00000571558 TRHP20396 242 aaPredicted RBP24.82■■□□□ 1.56
RPAIN-209ENST00000571558 TARBP1Q13395 1621 aaKnown RBP24.82■■□□□ 1.56
RPAIN-209ENST00000571558 ARAP1Q96P48 1450 aa24.8■■□□□ 1.56
RPAIN-209ENST00000571558 CHD1O14646 1710 aa24.78■■□□□ 1.56
RPAIN-209ENST00000571558 FBLN2P98095 1184 aa24.77■■□□□ 1.56
RPAIN-209ENST00000571558 POLA1P09884 1462 aaPredicted RBP24.73■■□□□ 1.55
RPAIN-209ENST00000571558 SOGA1O94964 1423 aa24.65■■□□□ 1.54
RPAIN-209ENST00000571558 WDR97A6NE52 1622 aa24.64■■□□□ 1.54
RPAIN-209ENST00000571558 TDRD9Q8NDG6 1382 aaKnown RBP24.62■■□□□ 1.53
RPAIN-209ENST00000571558 AEBP2Q6ZN18 517 aaPredicted RBP24.61■■□□□ 1.53
RPAIN-209ENST00000571558 RAD54L2Q9Y4B4 1467 aa24.6■■□□□ 1.53
RPAIN-209ENST00000571558 CLASP1Q7Z460 1538 aa24.57■■□□□ 1.52
RPAIN-209ENST00000571558 CHMP7Q8WUX9 453 aaPredicted RBP24.57■■□□□ 1.52
RPAIN-209ENST00000571558 MAGI1Q96QZ7 1491 aaPredicted RBP24.56■■□□□ 1.52
RPAIN-209ENST00000571558 SNAPC4Q5SXM2 1469 aa24.56■■□□□ 1.52
RPAIN-209ENST00000571558 SYNJ1O43426 1573 aa24.55■■□□□ 1.52
RPAIN-209ENST00000571558 FGD5Q6ZNL6 1462 aa24.5■■□□□ 1.51
RPAIN-209ENST00000571558 GRIN2BQ13224 1484 aa24.49■■□□□ 1.51
RPAIN-209ENST00000571558 SYNJ2O15056 1496 aa24.46■■□□□ 1.51
RPAIN-209ENST00000571558 SUPT5HO00267 1087 aaKnown RBP24.45■■□□□ 1.51
RPAIN-209ENST00000571558 CUX1P39880 1505 aa24.39■■□□□ 1.49
RPAIN-209ENST00000571558 GAPVD1Q14C86 1478 aa24.36■■□□□ 1.49
RPAIN-209ENST00000571558 ABCA10Q8WWZ4 1543 aa24.25■■□□□ 1.47
RPAIN-209ENST00000571558 PBRM1Q86U86 1689 aa24.25■■□□□ 1.47
RPAIN-209ENST00000571558 ABCA5Q8WWZ7 1642 aa24.2■■□□□ 1.46
RPAIN-209ENST00000571558 GRIN2AQ12879 1464 aa24.15■■□□□ 1.46
RPAIN-209ENST00000571558 NUP160Q12769 1436 aa24.11■■□□□ 1.45
RPAIN-209ENST00000571558 WRNQ14191 1432 aaPredicted RBP eCLIP24.09■■□□□ 1.45
RPAIN-209ENST00000571558 CEP170Q5SW79 1584 aa24.07■■□□□ 1.44
RPAIN-209ENST00000571558 ERCC6L2Q5T890 1561 aa24.07■■□□□ 1.44
RPAIN-209ENST00000571558 FHAD1B1AJZ9 1412 aa24.03■■□□□ 1.44
RPAIN-209ENST00000571558 ADAMTS12P58397 1594 aa24.03■■□□□ 1.44
RPAIN-209ENST00000571558 SHROOM2Q13796 1616 aa24.02■■□□□ 1.44
RPAIN-209ENST00000571558 CHIC1Q5VXU3 224 aa23.97■■□□□ 1.43
RPAIN-209ENST00000571558 ERICH3Q5RHP9 1530 aa23.95■■□□□ 1.42
RPAIN-209ENST00000571558 TOP2BQ02880 1626 aa23.91■■□□□ 1.42
RPAIN-209ENST00000571558 BIVM-ERCC5R4GMW8 1640 aa23.9■■□□□ 1.42
RPAIN-209ENST00000571558 PRG4Q92954 1404 aaPredicted RBP23.9■■□□□ 1.42
RPAIN-209ENST00000571558 JPH4Q96JJ6 628 aa23.89■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 118.6 ms