RNA–Protein interactions for RNA: ENST00000555935.1

CHD8-209, Transcript of chromodomain helicase DNA binding protein 8, humanhuman

TSL 5

Gene CHD8, Length 2,617 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD8-209ENST00000555935 NISCHQ9Y2I1 1504 aa14.98□□□□□ -0.01
CHD8-209ENST00000555935 HRCP23327 699 aa13.11□□□□□ -0.31
CHD8-209ENST00000555935 SHROOM4Q9ULL8 1493 aa12.97□□□□□ -0.33
CHD8-209ENST00000555935 SUPT5HO00267 1087 aaKnown RBP12.92□□□□□ -0.34
CHD8-209ENST00000555935 MYO15BQ96JP2 1530 aa12.82□□□□□ -0.36
CHD8-209ENST00000555935 CHIC1Q5VXU3 224 aa12.8□□□□□ -0.36
CHD8-209ENST00000555935 PCGF6Q9BYE7 350 aa12.77□□□□□ -0.37
CHD8-209ENST00000555935 ZCCHC6Q5VYS8 1495 aaKnown RBP12.76□□□□□ -0.37
CHD8-209ENST00000555935 DCAF1Q9Y4B6 1507 aa12.71□□□□□ -0.38
CHD8-209ENST00000555935 PELP1Q8IZL8 1130 aaKnown RBP12.68□□□□□ -0.38
CHD8-209ENST00000555935 PPARGC1BQ86YN6 1023 aaKnown RBP12.67□□□□□ -0.38
CHD8-209ENST00000555935 CCDC180Q9P1Z9 1646 aa12.56□□□□□ -0.4
CHD8-209ENST00000555935 TRIM26Q12899 539 aaPredicted RBP12.51□□□□□ -0.41
CHD8-209ENST00000555935 ZEB1P37275 1124 aaPredicted RBP12.47□□□□□ -0.41
CHD8-209ENST00000555935 LOC105371045A0A1W2PR82 267 aa12.38□□□□□ -0.43
CHD8-209ENST00000555935 SCAF1Q9H7N4 1312 aaKnown RBP12.29□□□□□ -0.44
CHD8-209ENST00000555935 MYT1Q01538 1121 aa12.22□□□□□ -0.45
CHD8-209ENST00000555935 DCAF8L2P0C7V8 631 aa12.22□□□□□ -0.45
CHD8-209ENST00000555935 ABCC9O60706 1549 aa12.12□□□□□ -0.47
CHD8-209ENST00000555935 ACIN1Q9UKV3 1341 aaKnown RBP12.08□□□□□ -0.48
CHD8-209ENST00000555935 TRIM41Q8WV44 630 aa12.05□□□□□ -0.48
CHD8-209ENST00000555935 RSF1Q96T23 1441 aaPredicted RBP12□□□□□ -0.49
CHD8-209ENST00000555935 CENPBP07199 599 aaPredicted RBP11.99□□□□□ -0.49
CHD8-209ENST00000555935 NEUROD1Q13562 356 aa11.98□□□□□ -0.49
CHD8-209ENST00000555935 RB1CC1Q8TDY2 1594 aa11.95□□□□□ -0.5
CHD8-209ENST00000555935 GTF3C3Q9Y5Q9 886 aa11.91□□□□□ -0.5
CHD8-209ENST00000555935 FAM9AQ8IZU1 332 aaPredicted RBP11.9□□□□□ -0.5
CHD8-209ENST00000555935 CCER1Q8TC90 406 aaPredicted RBP11.89□□□□□ -0.51
CHD8-209ENST00000555935 DIEXFQ68CQ4 756 aaKnown RBP11.89□□□□□ -0.51
CHD8-209ENST00000555935 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.85□□□□□ -0.51
CHD8-209ENST00000555935 SCRIBQ14160 1630 aa11.78□□□□□ -0.52
CHD8-209ENST00000555935 WRNQ14191 1432 aaPredicted RBP eCLIP11.76□□□□□ -0.53
CHD8-209ENST00000555935 EHMT2Q96KQ7 1210 aa11.73□□□□□ -0.53
CHD8-209ENST00000555935 ZNF316A6NFI3 1004 aaPredicted RBP11.71□□□□□ -0.53
CHD8-209ENST00000555935 EIF4G1Q04637 1599 aaKnown RBP11.64□□□□□ -0.55
CHD8-209ENST00000555935 MROH2BQ7Z745 1585 aa11.63□□□□□ -0.55
CHD8-209ENST00000555935 CECR2Q9BXF3 1484 aa11.62□□□□□ -0.55
CHD8-209ENST00000555935 CEP162Q5TB80 1403 aa11.61□□□□□ -0.55
CHD8-209ENST00000555935 TNIKQ9UKE5 1360 aa11.6□□□□□ -0.55
CHD8-209ENST00000555935 BAZ1AQ9NRL2 1556 aaPredicted RBP11.6□□□□□ -0.55
CHD8-209ENST00000555935 CLSPNQ9HAW4 1339 aa11.59□□□□□ -0.55
CHD8-209ENST00000555935 YTHDC1Q96MU7 727 aaKnown RBP11.57□□□□□ -0.56
CHD8-209ENST00000555935 WIZO95785 1651 aa11.57□□□□□ -0.56
CHD8-209ENST00000555935 EEA1Q15075 1411 aa11.55□□□□□ -0.56
CHD8-209ENST00000555935 MIER1Q8N108 512 aa11.55□□□□□ -0.56
CHD8-209ENST00000555935 NACADO15069 1562 aa11.54□□□□□ -0.56
CHD8-209ENST00000555935 CCDC88BA6NC98 1476 aa11.5□□□□□ -0.57
CHD8-209ENST00000555935 TTBK1Q5TCY1 1321 aaPredicted RBP11.49□□□□□ -0.57
CHD8-209ENST00000555935 TOP2AP11388 1531 aaKnown RBP11.46□□□□□ -0.58
CHD8-209ENST00000555935 GOLGA3Q08378 1498 aa11.45□□□□□ -0.58
CHD8-209ENST00000555935 ABCC8Q09428 1581 aa11.45□□□□□ -0.58
CHD8-209ENST00000555935 CSRNP3Q8WYN3 585 aa11.45□□□□□ -0.58
CHD8-209ENST00000555935 SOGA1O94964 1423 aa11.44□□□□□ -0.58
CHD8-209ENST00000555935 UBTFP17480 764 aaKnown RBP11.41□□□□□ -0.58
CHD8-209ENST00000555935 SUPT16HQ9Y5B9 1047 aaKnown RBP11.39□□□□□ -0.59
CHD8-209ENST00000555935 SMARCA2P51531 1590 aa11.38□□□□□ -0.59
CHD8-209ENST00000555935 HNRNPUL2Q1KMD3 747 aaKnown RBP11.37□□□□□ -0.59
CHD8-209ENST00000555935 ANP32EQ9BTT0 268 aa11.36□□□□□ -0.59
CHD8-209ENST00000555935 CEP164Q9UPV0 1460 aa11.35□□□□□ -0.59
CHD8-209ENST00000555935 RUSC2Q8N2Y8 1516 aa11.34□□□□□ -0.59
CHD8-209ENST00000555935 VPS8Q8N3P4 1428 aa11.33□□□□□ -0.6
CHD8-209ENST00000555935 KIF21BO75037 1637 aa11.33□□□□□ -0.6
CHD8-209ENST00000555935 TSHZ2Q9NRE2 1034 aa11.32□□□□□ -0.6
CHD8-209ENST00000555935 CLIP1P30622 1438 aa11.32□□□□□ -0.6
CHD8-209ENST00000555935 SMARCA4P51532 1647 aa11.31□□□□□ -0.6
CHD8-209ENST00000555935 BAZ1BQ9UIG0 1483 aaKnown RBP11.29□□□□□ -0.6
CHD8-209ENST00000555935 APLP2Q06481 763 aa11.29□□□□□ -0.6
CHD8-209ENST00000555935 DHX57Q6P158 1386 aaKnown RBP11.26□□□□□ -0.61
CHD8-209ENST00000555935 BCL11AQ9H165 835 aa11.23□□□□□ -0.61
CHD8-209ENST00000555935 CUX2O14529 1486 aa11.17□□□□□ -0.62
CHD8-209ENST00000555935 SYNJ1O43426 1573 aa11.17□□□□□ -0.62
CHD8-209ENST00000555935 RAPGEF2Q9Y4G8 1499 aa11.16□□□□□ -0.62
CHD8-209ENST00000555935 RRBP1Q9P2E9 1410 aaKnown RBP11.14□□□□□ -0.63
CHD8-209ENST00000555935 PEG3Q9GZU2 1588 aa11.11□□□□□ -0.63
CHD8-209ENST00000555935 ERICH3Q5RHP9 1530 aa11.09□□□□□ -0.63
CHD8-209ENST00000555935 FKBP8Q14318 412 aa11.08□□□□□ -0.64
CHD8-209ENST00000555935 ARAP1Q96P48 1450 aa11.08□□□□□ -0.64
CHD8-209ENST00000555935 NEFLP07196 543 aa11.07□□□□□ -0.64
CHD8-209ENST00000555935 RBM19Q9Y4C8 960 aaKnown RBP11.06□□□□□ -0.64
CHD8-209ENST00000555935 CCNB3Q8WWL7 1395 aa11.05□□□□□ -0.64
CHD8-209ENST00000555935 BCANQ96GW7 911 aa11.05□□□□□ -0.64
CHD8-209ENST00000555935 PRXQ9BXM0 1461 aa11.04□□□□□ -0.64
CHD8-209ENST00000555935 KCNH8Q96L42 1107 aa11.04□□□□□ -0.64
CHD8-209ENST00000555935 KANK4Q5T7N3 995 aaPredicted RBP11.03□□□□□ -0.64
CHD8-209ENST00000555935 TOP2BQ02880 1626 aa11.03□□□□□ -0.64
CHD8-209ENST00000555935 CCER2I3L3R5 266 aa11.02□□□□□ -0.65
CHD8-209ENST00000555935 MAPKBP1O60336 1514 aa11.01□□□□□ -0.65
CHD8-209ENST00000555935 UNC13AQ9UPW8 1703 aa11.01□□□□□ -0.65
CHD8-209ENST00000555935 RANGAP1P46060 587 aaPredicted RBP11□□□□□ -0.65
CHD8-209ENST00000555935 TIMELESSQ9UNS1 1208 aa11□□□□□ -0.65
CHD8-209ENST00000555935 RAB3GAP2Q9H2M9 1393 aa10.99□□□□□ -0.65
CHD8-209ENST00000555935 BIVM-ERCC5R4GMW8 1640 aa10.98□□□□□ -0.65
CHD8-209ENST00000555935 PPP1R15AO75807 674 aaPredicted RBP10.98□□□□□ -0.65
CHD8-209ENST00000555935 FANCIQ9NVI1 1328 aa10.97□□□□□ -0.65
CHD8-209ENST00000555935 DDX10Q13206 875 aaKnown RBP10.96□□□□□ -0.65
CHD8-209ENST00000555935 MYT1LQ9UL68 1186 aa10.95□□□□□ -0.66
CHD8-209ENST00000555935 SETD5Q9C0A6 1442 aa10.95□□□□□ -0.66
CHD8-209ENST00000555935 MAP3K1Q13233 1512 aa10.95□□□□□ -0.66
CHD8-209ENST00000555935 ATAD2BQ9ULI0 1458 aa10.94□□□□□ -0.66
CHD8-209ENST00000555935 ANP32CO43423 234 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms