RNA–Protein interactions for RNA: ENST00000571043.5

RPAIN-208, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,547 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-208ENST00000571043 NISCHQ9Y2I1 1504 aa39.6■■■■□ 3.93
RPAIN-208ENST00000571043 CCDC180Q9P1Z9 1646 aa34.87■■■■□ 3.17
RPAIN-208ENST00000571043 ABCC9O60706 1549 aa33.5■■■□□ 2.95
RPAIN-208ENST00000571043 ZCCHC6Q5VYS8 1495 aaKnown RBP33.09■■■□□ 2.89
RPAIN-208ENST00000571043 DCAF8L2P0C7V8 631 aa32.85■■■□□ 2.85
RPAIN-208ENST00000571043 DCAF1Q9Y4B6 1507 aa32.8■■■□□ 2.84
RPAIN-208ENST00000571043 MYO15BQ96JP2 1530 aa32.69■■■□□ 2.82
RPAIN-208ENST00000571043 NACADO15069 1562 aa32.66■■■□□ 2.82
RPAIN-208ENST00000571043 RB1CC1Q8TDY2 1594 aa32.51■■■□□ 2.8
RPAIN-208ENST00000571043 SCRIBQ14160 1630 aa31.86■■■□□ 2.69
RPAIN-208ENST00000571043 UNC13AQ9UPW8 1703 aa31.84■■■□□ 2.69
RPAIN-208ENST00000571043 SHROOM4Q9ULL8 1493 aa31.66■■■□□ 2.66
RPAIN-208ENST00000571043 BICRAQ9NZM4 1560 aa31.54■■■□□ 2.64
RPAIN-208ENST00000571043 PABPN1Q86U42 306 aaKnown RBP eCLIP31.46■■■□□ 2.63
RPAIN-208ENST00000571043 CECR2Q9BXF3 1484 aa30.78■■■□□ 2.52
RPAIN-208ENST00000571043 EIF4G1Q04637 1599 aaKnown RBP30.63■■■□□ 2.49
RPAIN-208ENST00000571043 BAZ1AQ9NRL2 1556 aaPredicted RBP30.63■■■□□ 2.49
RPAIN-208ENST00000571043 SMARCA4P51532 1647 aa30.56■■■□□ 2.48
RPAIN-208ENST00000571043 MROH2BQ7Z745 1585 aa30.52■■■□□ 2.48
RPAIN-208ENST00000571043 SUPT5HO00267 1087 aaKnown RBP30.47■■■□□ 2.47
RPAIN-208ENST00000571043 RSF1Q96T23 1441 aaPredicted RBP30.43■■■□□ 2.46
RPAIN-208ENST00000571043 CC2D2AQ9P2K1 1620 aa30.35■■■□□ 2.45
RPAIN-208ENST00000571043 PEG3Q9GZU2 1588 aa30.27■■■□□ 2.44
RPAIN-208ENST00000571043 ATAD2BQ9ULI0 1458 aa30.25■■■□□ 2.43
RPAIN-208ENST00000571043 DNAJC5BQ9UF47 199 aa30.24■■■□□ 2.43
RPAIN-208ENST00000571043 WIZO95785 1651 aa30.24■■■□□ 2.43
RPAIN-208ENST00000571043 SMARCA2P51531 1590 aa30.23■■■□□ 2.43
RPAIN-208ENST00000571043 NCAPD3P42695 1498 aa30.15■■■□□ 2.42
RPAIN-208ENST00000571043 HMGXB3Q12766 1538 aa30.02■■■□□ 2.4
RPAIN-208ENST00000571043 BAZ1BQ9UIG0 1483 aaKnown RBP30.01■■■□□ 2.39
RPAIN-208ENST00000571043 TOP2AP11388 1531 aaKnown RBP29.91■■■□□ 2.38
RPAIN-208ENST00000571043 CCDC88BA6NC98 1476 aa29.61■■■□□ 2.33
RPAIN-208ENST00000571043 CHIC1Q5VXU3 224 aa29.39■■■□□ 2.3
RPAIN-208ENST00000571043 CADPSQ9ULU8 1353 aa29.31■■■□□ 2.28
RPAIN-208ENST00000571043 CFTRP13569 1480 aa29.27■■■□□ 2.28
RPAIN-208ENST00000571043 LAMC3Q9Y6N6 1575 aa29.22■■■□□ 2.27
RPAIN-208ENST00000571043 NESP48681 1621 aa29.2■■■□□ 2.27
RPAIN-208ENST00000571043 PRDM2Q13029 1718 aa29.08■■■□□ 2.25
RPAIN-208ENST00000571043 PDS5BQ9NTI5 1447 aa29.02■■■□□ 2.24
RPAIN-208ENST00000571043 FANCD2Q9BXW9 1451 aa28.94■■■□□ 2.22
RPAIN-208ENST00000571043 KIF21AQ7Z4S6 1674 aa28.87■■■□□ 2.21
RPAIN-208ENST00000571043 CEP164Q9UPV0 1460 aa28.82■■■□□ 2.2
RPAIN-208ENST00000571043 ERCC6Q03468 1493 aa28.81■■■□□ 2.2
RPAIN-208ENST00000571043 ABCC8Q09428 1581 aa28.7■■■□□ 2.19
RPAIN-208ENST00000571043 TRIM41Q8WV44 630 aa28.66■■■□□ 2.18
RPAIN-208ENST00000571043 WRNQ14191 1432 aaPredicted RBP eCLIP28.66■■■□□ 2.18
RPAIN-208ENST00000571043 MRC2Q9UBG0 1479 aa28.65■■■□□ 2.18
RPAIN-208ENST00000571043 URB2Q14146 1524 aaKnown RBP28.61■■■□□ 2.17
RPAIN-208ENST00000571043 CUX1P39880 1505 aa28.59■■■□□ 2.17
RPAIN-208ENST00000571043 THOC2Q8NI27 1593 aaKnown RBP28.59■■■□□ 2.17
RPAIN-208ENST00000571043 DNMBPQ6XZF7 1577 aa28.56■■■□□ 2.16
RPAIN-208ENST00000571043 TOPBP1Q92547 1522 aa28.55■■■□□ 2.16
RPAIN-208ENST00000571043 SYNJ1O43426 1573 aa28.53■■■□□ 2.16
RPAIN-208ENST00000571043 WDR62O43379 1518 aa28.53■■■□□ 2.16
RPAIN-208ENST00000571043 TOP2BQ02880 1626 aa28.52■■■□□ 2.16
RPAIN-208ENST00000571043 BIVM-ERCC5R4GMW8 1640 aa28.5■■■□□ 2.15
RPAIN-208ENST00000571043 FGD5Q6ZNL6 1462 aa28.37■■■□□ 2.13
RPAIN-208ENST00000571043 POLA1P09884 1462 aaPredicted RBP28.36■■■□□ 2.13
RPAIN-208ENST00000571043 CUX2O14529 1486 aa28.3■■■□□ 2.12
RPAIN-208ENST00000571043 SOGA1O94964 1423 aa28.28■■■□□ 2.12
RPAIN-208ENST00000571043 RAD54L2Q9Y4B4 1467 aa28.24■■■□□ 2.11
RPAIN-208ENST00000571043 LOC105371045A0A1W2PR82 267 aa28.23■■■□□ 2.11
RPAIN-208ENST00000571043 IFT140Q96RY7 1462 aa28.21■■■□□ 2.11
RPAIN-208ENST00000571043 TARBP1Q13395 1621 aaKnown RBP28.2■■■□□ 2.11
RPAIN-208ENST00000571043 ABCA10Q8WWZ4 1543 aa28.16■■■□□ 2.1
RPAIN-208ENST00000571043 WDR97A6NE52 1622 aa28.1■■■□□ 2.09
RPAIN-208ENST00000571043 FAM9AQ8IZU1 332 aaPredicted RBP28.09■■■□□ 2.09
RPAIN-208ENST00000571043 TDRD9Q8NDG6 1382 aaKnown RBP28.04■■■□□ 2.08
RPAIN-208ENST00000571043 ZNF608Q9ULD9 1512 aaPredicted RBP28.04■■■□□ 2.08
RPAIN-208ENST00000571043 KIF27Q86VH2 1401 aa28.01■■■□□ 2.07
RPAIN-208ENST00000571043 AQRO60306 1485 aaKnown RBP eCLIP27.98■■■□□ 2.073e-7■■■□□ 18.2
RPAIN-208ENST00000571043 RUSC2Q8N2Y8 1516 aa27.98■■■□□ 2.07
RPAIN-208ENST00000571043 ABCA5Q8WWZ7 1642 aa27.95■■■□□ 2.07
RPAIN-208ENST00000571043 EEA1Q15075 1411 aa27.95■■■□□ 2.06
RPAIN-208ENST00000571043 GAPVD1Q14C86 1478 aa27.95■■■□□ 2.06
RPAIN-208ENST00000571043 EIF4G3O43432 1585 aaKnown RBP27.92■■■□□ 2.06
RPAIN-208ENST00000571043 IGF1RP08069 1367 aa27.86■■■□□ 2.05
RPAIN-208ENST00000571043 GRIN2BQ13224 1484 aa27.84■■■□□ 2.05
RPAIN-208ENST00000571043 CSRNP3Q8WYN3 585 aa27.83■■■□□ 2.05
RPAIN-208ENST00000571043 ERICH3Q5RHP9 1530 aa27.82■■■□□ 2.04
RPAIN-208ENST00000571043 PBRM1Q86U86 1689 aa27.82■■■□□ 2.04
RPAIN-208ENST00000571043 MAGI1Q96QZ7 1491 aaPredicted RBP27.7■■■□□ 2.03
RPAIN-208ENST00000571043 SNAPC4Q5SXM2 1469 aa27.69■■■□□ 2.02
RPAIN-208ENST00000571043 CARMIL1Q5VZK9 1371 aa27.68■■■□□ 2.02
RPAIN-208ENST00000571043 CUL7Q14999 1698 aa27.68■■■□□ 2.02
RPAIN-208ENST00000571043 PRXQ9BXM0 1461 aa27.65■■■□□ 2.02
RPAIN-208ENST00000571043 FHAD1B1AJZ9 1412 aa27.64■■■□□ 2.02
RPAIN-208ENST00000571043 EHMT2Q96KQ7 1210 aa27.63■■■□□ 2.01
RPAIN-208ENST00000571043 ADAMTS12P58397 1594 aa27.62■■■□□ 2.01
RPAIN-208ENST00000571043 SYNJ2O15056 1496 aa27.59■■■□□ 2.01
RPAIN-208ENST00000571043 RAPGEF2Q9Y4G8 1499 aa27.57■■■□□ 2
RPAIN-208ENST00000571043 CHMP7Q8WUX9 453 aaPredicted RBP27.56■■■□□ 2
RPAIN-208ENST00000571043 KIF21BO75037 1637 aa27.55■■■□□ 2
RPAIN-208ENST00000571043 TNIKQ9UKE5 1360 aa27.55■■■□□ 2
RPAIN-208ENST00000571043 GOLGA3Q08378 1498 aa27.52■■■□□ 2
RPAIN-208ENST00000571043 FBLN2P98095 1184 aa27.51■■■□□ 2
RPAIN-208ENST00000571043 GRIN2AQ12879 1464 aa27.48■■□□□ 1.99
RPAIN-208ENST00000571043 CHD1O14646 1710 aa27.47■■□□□ 1.99
RPAIN-208ENST00000571043 UBTFP17480 764 aaKnown RBP27.38■■□□□ 1.97
RPAIN-208ENST00000571043 CEP162Q5TB80 1403 aa27.36■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms