RNA–Protein interactions for RNA: ENST00000571613.5

RPAIN-210, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,688 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-210ENST00000571613 NISCHQ9Y2I1 1504 aa43.72■■■■■ 4.59
RPAIN-210ENST00000571613 CCDC180Q9P1Z9 1646 aa38.11■■■■□ 3.69
RPAIN-210ENST00000571613 ZCCHC6Q5VYS8 1495 aaKnown RBP36.74■■■■□ 3.47
RPAIN-210ENST00000571613 DCAF1Q9Y4B6 1507 aa36.25■■■■□ 3.39
RPAIN-210ENST00000571613 DCAF8L2P0C7V8 631 aa36.03■■■■□ 3.36
RPAIN-210ENST00000571613 ABCC9O60706 1549 aa35.85■■■■□ 3.33
RPAIN-210ENST00000571613 MYO15BQ96JP2 1530 aa35.83■■■■□ 3.33
RPAIN-210ENST00000571613 SHROOM4Q9ULL8 1493 aa35.57■■■■□ 3.28
RPAIN-210ENST00000571613 NACADO15069 1562 aa35.52■■■■□ 3.28
RPAIN-210ENST00000571613 RB1CC1Q8TDY2 1594 aa35.17■■■■□ 3.22
RPAIN-210ENST00000571613 SCRIBQ14160 1630 aa34.93■■■■□ 3.18
RPAIN-210ENST00000571613 SUPT5HO00267 1087 aaKnown RBP34.35■■■■□ 3.09
RPAIN-210ENST00000571613 UNC13AQ9UPW8 1703 aa34.27■■■■□ 3.08
RPAIN-210ENST00000571613 BICRAQ9NZM4 1560 aa33.98■■■■□ 3.03
RPAIN-210ENST00000571613 RSF1Q96T23 1441 aaPredicted RBP33.93■■■■□ 3.02
RPAIN-210ENST00000571613 CECR2Q9BXF3 1484 aa33.87■■■■□ 3.01
RPAIN-210ENST00000571613 PABPN1Q86U42 306 aaKnown RBP eCLIP33.82■■■■□ 3
RPAIN-210ENST00000571613 BAZ1AQ9NRL2 1556 aaPredicted RBP33.79■■■■□ 3
RPAIN-210ENST00000571613 MROH2BQ7Z745 1585 aa33.71■■■□□ 2.99
RPAIN-210ENST00000571613 SMARCA4P51532 1647 aa33.56■■■□□ 2.96
RPAIN-210ENST00000571613 WIZO95785 1651 aa33.4■■■□□ 2.94
RPAIN-210ENST00000571613 PEG3Q9GZU2 1588 aa33.21■■■□□ 2.91
RPAIN-210ENST00000571613 TOP2AP11388 1531 aaKnown RBP33.16■■■□□ 2.9
RPAIN-210ENST00000571613 SMARCA2P51531 1590 aa33.07■■■□□ 2.88
RPAIN-210ENST00000571613 ATAD2BQ9ULI0 1458 aa33.02■■■□□ 2.88
RPAIN-210ENST00000571613 EIF4G1Q04637 1599 aaKnown RBP33■■■□□ 2.87
RPAIN-210ENST00000571613 CHIC1Q5VXU3 224 aa32.97■■■□□ 2.87
RPAIN-210ENST00000571613 BAZ1BQ9UIG0 1483 aaKnown RBP32.85■■■□□ 2.85
RPAIN-210ENST00000571613 CCDC88BA6NC98 1476 aa32.79■■■□□ 2.84
RPAIN-210ENST00000571613 NCAPD3P42695 1498 aa32.77■■■□□ 2.84
RPAIN-210ENST00000571613 HMGXB3Q12766 1538 aa32.72■■■□□ 2.83
RPAIN-210ENST00000571613 CC2D2AQ9P2K1 1620 aa32.47■■■□□ 2.79
RPAIN-210ENST00000571613 TRIM41Q8WV44 630 aa32.4■■■□□ 2.78
RPAIN-210ENST00000571613 CFTRP13569 1480 aa32.05■■■□□ 2.72
RPAIN-210ENST00000571613 ABCC8Q09428 1581 aa32.04■■■□□ 2.72
RPAIN-210ENST00000571613 WRNQ14191 1432 aaPredicted RBP eCLIP31.98■■■□□ 2.71
RPAIN-210ENST00000571613 CADPSQ9ULU8 1353 aa31.94■■■□□ 2.7
RPAIN-210ENST00000571613 PRDM2Q13029 1718 aa31.83■■■□□ 2.69
RPAIN-210ENST00000571613 SYNJ1O43426 1573 aa31.72■■■□□ 2.67
RPAIN-210ENST00000571613 EEA1Q15075 1411 aa31.68■■■□□ 2.66
RPAIN-210ENST00000571613 TOP2BQ02880 1626 aa31.68■■■□□ 2.66
RPAIN-210ENST00000571613 FAM9AQ8IZU1 332 aaPredicted RBP31.66■■■□□ 2.66
RPAIN-210ENST00000571613 LAMC3Q9Y6N6 1575 aa31.64■■■□□ 2.65
RPAIN-210ENST00000571613 BIVM-ERCC5R4GMW8 1640 aa31.63■■■□□ 2.65
RPAIN-210ENST00000571613 LOC105371045A0A1W2PR82 267 aa31.62■■■□□ 2.65
RPAIN-210ENST00000571613 FANCD2Q9BXW9 1451 aa31.54■■■□□ 2.64
RPAIN-210ENST00000571613 CUX1P39880 1505 aa31.52■■■□□ 2.64
RPAIN-210ENST00000571613 SOGA1O94964 1423 aa31.51■■■□□ 2.63
RPAIN-210ENST00000571613 DNAJC5BQ9UF47 199 aa31.46■■■□□ 2.63
RPAIN-210ENST00000571613 NESP48681 1621 aa31.46■■■□□ 2.63
RPAIN-210ENST00000571613 PDS5BQ9NTI5 1447 aa31.44■■■□□ 2.62
RPAIN-210ENST00000571613 CSRNP3Q8WYN3 585 aa31.41■■■□□ 2.62
RPAIN-210ENST00000571613 CEP164Q9UPV0 1460 aa31.35■■■□□ 2.61
RPAIN-210ENST00000571613 RUSC2Q8N2Y8 1516 aa31.32■■■□□ 2.61
RPAIN-210ENST00000571613 DNMBPQ6XZF7 1577 aa31.28■■■□□ 2.6
RPAIN-210ENST00000571613 KIF27Q86VH2 1401 aa31.21■■■□□ 2.59
RPAIN-210ENST00000571613 TOPBP1Q92547 1522 aa31.19■■■□□ 2.58
RPAIN-210ENST00000571613 FGD5Q6ZNL6 1462 aa31.19■■■□□ 2.58
RPAIN-210ENST00000571613 GOLGA3Q08378 1498 aa31.16■■■□□ 2.58
RPAIN-210ENST00000571613 KIF21BO75037 1637 aa31.14■■■□□ 2.58
RPAIN-210ENST00000571613 EHMT2Q96KQ7 1210 aa31.11■■■□□ 2.57
RPAIN-210ENST00000571613 TNIKQ9UKE5 1360 aa31.09■■■□□ 2.57
RPAIN-210ENST00000571613 KIF21AQ7Z4S6 1674 aa31.09■■■□□ 2.57
RPAIN-210ENST00000571613 URB2Q14146 1524 aaKnown RBP31.08■■■□□ 2.57
RPAIN-210ENST00000571613 POLA1P09884 1462 aaPredicted RBP31.04■■■□□ 2.56
RPAIN-210ENST00000571613 CUX2O14529 1486 aa31.03■■■□□ 2.56
RPAIN-210ENST00000571613 UBTFP17480 764 aaKnown RBP31■■■□□ 2.55
RPAIN-210ENST00000571613 ABCA10Q8WWZ4 1543 aa30.98■■■□□ 2.55
RPAIN-210ENST00000571613 PRXQ9BXM0 1461 aa30.96■■■□□ 2.55
RPAIN-210ENST00000571613 MRC2Q9UBG0 1479 aa30.96■■■□□ 2.55
RPAIN-210ENST00000571613 ERICH3Q5RHP9 1530 aa30.95■■■□□ 2.55
RPAIN-210ENST00000571613 RAD54L2Q9Y4B4 1467 aa30.89■■■□□ 2.53
RPAIN-210ENST00000571613 RAPGEF2Q9Y4G8 1499 aa30.88■■■□□ 2.53
RPAIN-210ENST00000571613 IGF1RP08069 1367 aa30.87■■■□□ 2.53
RPAIN-210ENST00000571613 CEP162Q5TB80 1403 aa30.86■■■□□ 2.53
RPAIN-210ENST00000571613 ERCC6Q03468 1493 aa30.82■■■□□ 2.52
RPAIN-210ENST00000571613 WDR62O43379 1518 aa30.78■■■□□ 2.52
RPAIN-210ENST00000571613 WDR97A6NE52 1622 aa30.77■■■□□ 2.52
RPAIN-210ENST00000571613 CARMIL1Q5VZK9 1371 aa30.74■■■□□ 2.51
RPAIN-210ENST00000571613 TARBP1Q13395 1621 aaKnown RBP30.69■■■□□ 2.5
RPAIN-210ENST00000571613 ABCA5Q8WWZ7 1642 aa30.66■■■□□ 2.5
RPAIN-210ENST00000571613 GAPVD1Q14C86 1478 aa30.64■■■□□ 2.5
RPAIN-210ENST00000571613 CUL7Q14999 1698 aa30.64■■■□□ 2.5
RPAIN-210ENST00000571613 IFT140Q96RY7 1462 aa30.64■■■□□ 2.49
RPAIN-210ENST00000571613 CLIP1P30622 1438 aa30.63■■■□□ 2.49
RPAIN-210ENST00000571613 TDRD9Q8NDG6 1382 aaKnown RBP30.61■■■□□ 2.49
RPAIN-210ENST00000571613 THOC2Q8NI27 1593 aaKnown RBP30.6■■■□□ 2.49
RPAIN-210ENST00000571613 GRIN2BQ13224 1484 aa30.42■■■□□ 2.46
RPAIN-210ENST00000571613 TRIM26Q12899 539 aaPredicted RBP30.42■■■□□ 2.46
RPAIN-210ENST00000571613 VPS8Q8N3P4 1428 aa30.4■■■□□ 2.46
RPAIN-210ENST00000571613 AQRO60306 1485 aaKnown RBP eCLIP30.39■■■□□ 2.453e-7■■■□□ 18.2
RPAIN-210ENST00000571613 PBRM1Q86U86 1689 aa30.37■■■□□ 2.45
RPAIN-210ENST00000571613 FHAD1B1AJZ9 1412 aa30.36■■■□□ 2.45
RPAIN-210ENST00000571613 ZNF608Q9ULD9 1512 aaPredicted RBP30.32■■■□□ 2.44
RPAIN-210ENST00000571613 RANGAP1P46060 587 aaPredicted RBP30.31■■■□□ 2.44
RPAIN-210ENST00000571613 PCGF6Q9BYE7 350 aa30.31■■■□□ 2.44
RPAIN-210ENST00000571613 ARHGAP35Q9NRY4 1499 aa30.26■■■□□ 2.43
RPAIN-210ENST00000571613 ADAMTS12P58397 1594 aa30.26■■■□□ 2.43
RPAIN-210ENST00000571613 ARAP1Q96P48 1450 aa30.25■■■□□ 2.43
RPAIN-210ENST00000571613 EIF4G3O43432 1585 aaKnown RBP30.24■■■□□ 2.43
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms