Protein–RNA interactions for Protein: P83369

LSM11, U7 snRNA-associated Sm-like protein LSm11, humanhuman

Known RBP eCLIP

Length 360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM11P83369 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.255e-9■■■■□ 25.5
LSM11P83369 CSAD-204ENST00000379850 2379 ntTSL 512.55□□□□□ -0.48e-8■■■■□ 25.5
LSM11P83369 RNF215-204ENST00000421022 361 ntTSL 211.66□□□□□ -0.548e-8■■■■□ 25.5
LSM11P83369 CSAD-201ENST00000267085 2645 ntTSL 1 (best) BASIC11.63□□□□□ -0.558e-8■■■■□ 25.5
LSM11P83369 AFF4-203ENST00000378595 3348 ntTSL 1 (best) BASIC11.33□□□□□ -0.65e-9■■■■□ 25.5
LSM11P83369 RNF215-210ENST00000631046 468 ntTSL 211□□□□□ -0.658e-8■■■■□ 25.5
LSM11P83369 RNF215-202ENST00000332468 8141 ntTSL 510.49□□□□□ -0.738e-8■■■■□ 25.5
LSM11P83369 RNF215-209ENST00000630264 534 ntTSL 210.05□□□□□ -0.88e-8■■■■□ 25.5
LSM11P83369 CENPU-204ENST00000508095 665 ntTSL 29.07□□□□□ -0.968e-8■■■■□ 25.5
LSM11P83369 RPL41-201ENST00000358888 551 ntTSL 38.79□□□□□ -19e-12■■■■□ 25.5
LSM11P83369 RPL41-204ENST00000546591 699 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1.019e-12■■■■□ 25.5
LSM11P83369 RPL41-202ENST00000501597 469 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.079e-12■■■■□ 25.5
LSM11P83369 RPL41-206ENST00000552314 595 ntTSL 28.17□□□□□ -1.19e-12■■■■□ 25.5
LSM11P83369 RPL41-203ENST00000546485 335 ntTSL 26.64□□□□□ -1.359e-12■■■■□ 25.5
LSM11P83369 RPL41-205ENST00000546654 238 ntTSL 25.16□□□□□ -1.589e-12■■■■□ 25.5
LSM11P83369 DPP7-202ENST00000460830 639 ntTSL 217.66■□□□□ 0.425e-8■■■■□ 25.4
LSM11P83369 NME4-209ENST00000460297 1652 ntTSL 522.07■■□□□ 1.125e-7■■■■□ 25.3
LSM11P83369 NME4-204ENST00000433358 966 ntTSL 320.12■□□□□ 0.815e-7■■■■□ 25.3
LSM11P83369 NME4-206ENST00000448828 1167 ntTSL 219.6■□□□□ 0.735e-7■■■■□ 25.3
LSM11P83369 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC18.86■□□□□ 0.613e-11■■■■□ 25.3
LSM11P83369 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.65e-7■■■■□ 25.3
LSM11P83369 NME4-202ENST00000382940 766 ntTSL 3 BASIC18.78■□□□□ 0.65e-7■■■■□ 25.3
LSM11P83369 NME4-211ENST00000620944 1193 ntTSL 2 BASIC18.78■□□□□ 0.65e-7■■■■□ 25.3
LSM11P83369 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.575e-7■■■■□ 25.3
LSM11P83369 C17orf62-205ENST00000536759 2222 ntTSL 217.45■□□□□ 0.385e-7■■■■□ 25.3
LSM11P83369 LINC01029-201ENST00000577408 1249 nt17.44■□□□□ 0.385e-7■■■■□ 25.3
LSM11P83369 SYMPK-209ENST00000598155 1603 ntTSL 517.34■□□□□ 0.375e-7■■■■□ 25.3
LSM11P83369 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC16.56■□□□□ 0.245e-7■■■■□ 25.3
LSM11P83369 NME4-205ENST00000444498 1111 ntTSL 316.27■□□□□ 0.25e-7■■■■□ 25.3
LSM11P83369 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC16.12■□□□□ 0.175e-7■■■■□ 25.3
LSM11P83369 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.115e-7■■■■□ 25.3
LSM11P83369 NME4-212ENST00000621774 904 ntTSL 3 BASIC15.11■□□□□ 0.015e-7■■■■□ 25.3
LSM11P83369 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 05e-7■■■■□ 25.3
LSM11P83369 C17orf62-232ENST00000584024 1965 ntTSL 215.06■□□□□ 05e-7■■■■□ 25.3
LSM11P83369 NME4-207ENST00000450036 985 ntTSL 3 BASIC14.4□□□□□ -0.15e-7■■■■□ 25.3
LSM11P83369 SYMPK-202ENST00000593504 5107 ntTSL 213.76□□□□□ -0.215e-7■■■■□ 25.3
LSM11P83369 LINC01029-203ENST00000582805 788 ntTSL 1 (best)13.38□□□□□ -0.275e-7■■■■□ 25.3
LSM11P83369 EEF1D-210ENST00000525223 610 ntTSL 313.09□□□□□ -0.315e-7■■■■□ 25.3
LSM11P83369 SYMPK-211ENST00000598364 995 ntTSL 312.98□□□□□ -0.335e-7■■■■□ 25.3
LSM11P83369 NME4-208ENST00000454619 719 ntTSL 512.88□□□□□ -0.355e-7■■■■□ 25.3
LSM11P83369 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC12.85□□□□□ -0.355e-7■■■■□ 25.3
LSM11P83369 SYMPK-215ENST00000600237 5164 ntTSL 512.79□□□□□ -0.365e-7■■■■□ 25.3
LSM11P83369 NME4-203ENST00000397722 1232 ntTSL 2 BASIC12.52□□□□□ -0.415e-7■■■■□ 25.3
LSM11P83369 C17orf62-214ENST00000578895 3154 ntTSL 212.12□□□□□ -0.475e-7■■■■□ 25.3
LSM11P83369 NOTCH1-201ENST00000277541 9371 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.475e-7■■■■□ 25.3
LSM11P83369 Z97192.3-201ENST00000420902 2975 ntTSL 2 BASIC11.99□□□□□ -0.492e-6■■■■□ 25.3
LSM11P83369 SYMPK-201ENST00000245934 4195 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.55e-7■■■■□ 25.3
LSM11P83369 EEF1D-234ENST00000530616 749 ntTSL 311.87□□□□□ -0.515e-7■■■■□ 25.3
LSM11P83369 C17orf62-237ENST00000585044 4327 ntTSL 210.25□□□□□ -0.775e-7■■■■□ 25.3
LSM11P83369 ILF3-205ENST00000586544 3859 ntTSL 1 (best)9.61□□□□□ -0.875e-7■■■■□ 25.3
LSM11P83369 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC4.89□□□□□ -1.635e-7■■■■□ 25.3
LSM11P83369 ITPR1-207ENST00000467056 1483 ntTSL 1 (best)12.27□□□□□ -0.452e-6■■■■□ 25.3
LSM11P83369 ITPR1-219ENST00000544951 4131 ntTSL 1 (best) BASIC10.77□□□□□ -0.692e-6■■■■□ 25.3
LSM11P83369 ITPR1-204ENST00000443694 9513 ntAPPRIS ALT1 TSL 1 (best) BASIC7.01□□□□□ -1.292e-6■■■■□ 25.3
LSM11P83369 ITPR1-203ENST00000357086 9762 ntAPPRIS P3 TSL 1 (best) BASIC6.96□□□□□ -1.32e-6■■■■□ 25.3
LSM11P83369 ITPR1-201ENST00000302640 10197 ntAPPRIS ALT1 TSL 5 BASIC6.83□□□□□ -1.322e-6■■■■□ 25.3
LSM11P83369 ITPR1-202ENST00000354582 10242 ntTSL 5 BASIC6.78□□□□□ -1.322e-6■■■■□ 25.3
LSM11P83369 ITPR1-205ENST00000456211 9717 ntTSL 1 (best) BASIC6.62□□□□□ -1.352e-6■■■■□ 25.3
LSM11P83369 ARFRP1-203ENST00000609188 225 ntTSL 515.07■□□□□ 02e-11■■■■□ 25.3
LSM11P83369 EEF1D-214ENST00000526135 535 ntTSL 211.22□□□□□ -0.612e-6■■■■□ 25.2
LSM11P83369 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC19.17■□□□□ 0.665e-14■■■■□ 25.2
LSM11P83369 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.335e-14■■■■□ 25.2
LSM11P83369 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC24.57■■□□□ 1.525e-7■■■■□ 25.2
LSM11P83369 AMN-202ENST00000541086 2269 ntTSL 221.4■■□□□ 1.025e-7■■■■□ 25.2
LSM11P83369 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.921e-8■■■■□ 25.2
LSM11P83369 PPP1R37-204ENST00000540059 1719 ntTSL 219.7■□□□□ 0.745e-7■■■■□ 25.2
LSM11P83369 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.51e-6■■■■□ 25.2
LSM11P83369 PCYT2-210ENST00000572473 575 ntTSL 518.19■□□□□ 0.55e-7■■■■□ 25.2
LSM11P83369 AC087289.3-201ENST00000590947 1886 ntAPPRIS ALT2 TSL 215.86■□□□□ 0.131e-8■■■■□ 25.2
LSM11P83369 PPP1R37-202ENST00000422370 5943 ntTSL 1 (best)15.48■□□□□ 0.075e-7■■■■□ 25.2
LSM11P83369 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.035e-7■■■■□ 25.2
LSM11P83369 MEGF6-205ENST00000485002 4705 ntTSL 514.23□□□□□ -0.131e-6■■■■□ 25.2
LSM11P83369 PCYT2-215ENST00000573927 778 ntTSL 314.03□□□□□ -0.165e-7■■■■□ 25.2
LSM11P83369 MARK4-203ENST00000587566 553 ntTSL 512.54□□□□□ -0.45e-7■■■■□ 25.2
LSM11P83369 MRPL38-217ENST00000588620 498 ntTSL 311.18□□□□□ -0.621e-8■■■■□ 25.2
LSM11P83369 AC087289.3-202ENST00000593156 4270 ntTSL 211.16□□□□□ -0.621e-8■■■■□ 25.2
LSM11P83369 MRPL38-207ENST00000477023 446 ntTSL 310□□□□□ -0.815e-7■■■■□ 25.2
LSM11P83369 MRPL38-208ENST00000477371 566 ntTSL 29.07□□□□□ -0.965e-7■■■■□ 25.2
LSM11P83369 MRPL38-211ENST00000483393 525 ntTSL 28.55□□□□□ -1.041e-8■■■■□ 25.2
LSM11P83369 MRPL38-210ENST00000480203 534 ntTSL 37.68□□□□□ -1.181e-8■■■■□ 25.2
LSM11P83369 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.292e-6■■■■□ 25.1
LSM11P83369 ARIH1-206ENST00000564062 612 ntTSL 327.58■■■□□ 2.018e-6■■■■□ 25.1
LSM11P83369 ARIH1-210ENST00000570085 807 ntTSL 326.08■■□□□ 1.778e-6■■■■□ 25.1
LSM11P83369 LARP4B-202ENST00000406525 681 ntTSL 523.36■■□□□ 1.338e-6■■■■□ 25.1
LSM11P83369 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC22.17■■□□□ 1.142e-15■■■■□ 25.1
LSM11P83369 CERS4-203ENST00000558268 713 ntTSL 322.1■■□□□ 1.138e-6■■■■□ 25.1
LSM11P83369 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.18e-6■■■■□ 25.1
LSM11P83369 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.031e-10■■■■□ 25.1
LSM11P83369 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.998e-6■■■■□ 25.1
LSM11P83369 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC21.15■□□□□ 0.988e-6■■■■□ 25.1
LSM11P83369 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC20.25■□□□□ 0.838e-6■■■■□ 25.1
LSM11P83369 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC20■□□□□ 0.798e-6■■■■□ 25.1
LSM11P83369 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.781e-10■■■■□ 25.1
LSM11P83369 KIF13A-211ENST00000507576 529 ntTSL 319.52■□□□□ 0.722e-15■■■■□ 25.1
LSM11P83369 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.648e-6■■■■□ 25.1
LSM11P83369 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC18.83■□□□□ 0.68e-6■■■■□ 25.1
LSM11P83369 CERS4-210ENST00000559490 420 ntTSL 518.7■□□□□ 0.588e-6■■■■□ 25.1
LSM11P83369 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC18.64■□□□□ 0.581e-10■■■■□ 25.1
LSM11P83369 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.578e-6■■■■□ 25.1
LSM11P83369 C11orf49-215ENST00000528488 1623 ntTSL 218.27■□□□□ 0.528e-6■■■■□ 25.1
Retrieved 100 of 11,495 protein–RNA pairs in 53.3 ms