RNA–Protein interactions for RNA: ENST00000593504.5

SYMPK-202, Transcript of symplekin, humanhuman

TSL 2

Gene SYMPK, Length 5,107 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYMPK-202ENST00000593504 NISCHQ9Y2I1 1504 aa28.25■■■□□ 2.11
SYMPK-202ENST00000593504 DCAF8L2P0C7V8 631 aa27.02■■□□□ 1.92
SYMPK-202ENST00000593504 SHROOM4Q9ULL8 1493 aa25.93■■□□□ 1.74
SYMPK-202ENST00000593504 SUPT5HO00267 1087 aaKnown RBP25.92■■□□□ 1.74
SYMPK-202ENST00000593504 EHMT2Q96KQ7 1210 aa24.56■■□□□ 1.52
SYMPK-202ENST00000593504 FAM9AQ8IZU1 332 aaPredicted RBP24.27■■□□□ 1.48
SYMPK-202ENST00000593504 TRIM41Q8WV44 630 aa24.08■■□□□ 1.45
SYMPK-202ENST00000593504 PCGF6Q9BYE7 350 aa23.9■■□□□ 1.42
SYMPK-202ENST00000593504 APLP2Q06481 763 aa23.82■■□□□ 1.4
SYMPK-202ENST00000593504 ABCC9O60706 1549 aa23.78■■□□□ 1.4
SYMPK-202ENST00000593504 CHIC1Q5VXU3 224 aa23.69■■□□□ 1.38
SYMPK-202ENST00000593504 TTBK1Q5TCY1 1321 aaPredicted RBP23.69■■□□□ 1.38
SYMPK-202ENST00000593504 RANGAP1P46060 587 aaPredicted RBP23.55■■□□□ 1.36
SYMPK-202ENST00000593504 ZCCHC6Q5VYS8 1495 aaKnown RBP23.54■■□□□ 1.36
SYMPK-202ENST00000593504 CCDC180Q9P1Z9 1646 aa23.53■■□□□ 1.36
SYMPK-202ENST00000593504 UBTFP17480 764 aaKnown RBP23.51■■□□□ 1.35
SYMPK-202ENST00000593504 LOC105371045A0A1W2PR82 267 aa23.4■■□□□ 1.34
SYMPK-202ENST00000593504 PABPN1Q86U42 306 aaKnown RBP eCLIP23.29■■□□□ 1.321e-6■■■□□ 14.8
SYMPK-202ENST00000593504 ZEB1P37275 1124 aaPredicted RBP23.26■■□□□ 1.31
SYMPK-202ENST00000593504 PPARGC1BQ86YN6 1023 aaKnown RBP23.22■■□□□ 1.31
SYMPK-202ENST00000593504 CCER1Q8TC90 406 aaPredicted RBP23.21■■□□□ 1.31
SYMPK-202ENST00000593504 TRIM26Q12899 539 aaPredicted RBP23.17■■□□□ 1.3
SYMPK-202ENST00000593504 ATP1B4Q9UN42 357 aaPredicted RBP23.15■■□□□ 1.3
SYMPK-202ENST00000593504 SCRIBQ14160 1630 aa23.11■■□□□ 1.29
SYMPK-202ENST00000593504 PELP1Q8IZL8 1130 aaKnown RBP22.94■■□□□ 1.26
SYMPK-202ENST00000593504 HRCP23327 699 aa22.92■■□□□ 1.26
SYMPK-202ENST00000593504 MYT1Q01538 1121 aa22.79■■□□□ 1.24
SYMPK-202ENST00000593504 CENPBP07199 599 aaPredicted RBP22.61■■□□□ 1.21
SYMPK-202ENST00000593504 HNRNPUL2Q1KMD3 747 aaKnown RBP22.6■■□□□ 1.21
SYMPK-202ENST00000593504 RB1CC1Q8TDY2 1594 aa22.59■■□□□ 1.21
SYMPK-202ENST00000593504 ITGAEP38570 1179 aa22.58■■□□□ 1.2
SYMPK-202ENST00000593504 DCAF1Q9Y4B6 1507 aa22.57■■□□□ 1.2
SYMPK-202ENST00000593504 NACADO15069 1562 aa22.55■■□□□ 1.2
SYMPK-202ENST00000593504 RSF1Q96T23 1441 aaPredicted RBP22.48■■□□□ 1.19
SYMPK-202ENST00000593504 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.45■■□□□ 1.18
SYMPK-202ENST00000593504 CSRNP3Q8WYN3 585 aa22.44■■□□□ 1.18
SYMPK-202ENST00000593504 YTHDC1Q96MU7 727 aaKnown RBP22.35■■□□□ 1.17
SYMPK-202ENST00000593504 MYO15BQ96JP2 1530 aa22.26■■□□□ 1.15
SYMPK-202ENST00000593504 FAM50AQ14320 339 aaKnown RBP22.17■■□□□ 1.14
SYMPK-202ENST00000593504 CECR2Q9BXF3 1484 aa22.14■■□□□ 1.14
SYMPK-202ENST00000593504 BAZ1AQ9NRL2 1556 aaPredicted RBP22.07■■□□□ 1.12
SYMPK-202ENST00000593504 P3H3Q8IVL6 736 aa22.03■■□□□ 1.12
SYMPK-202ENST00000593504 DIEXFQ68CQ4 756 aaKnown RBP22.01■■□□□ 1.11
SYMPK-202ENST00000593504 BAZ1BQ9UIG0 1483 aaKnown RBP21.96■■□□□ 1.11
SYMPK-202ENST00000593504 MYT1LQ9UL68 1186 aa21.96■■□□□ 1.11
SYMPK-202ENST00000593504 NEFLP07196 543 aa21.94■■□□□ 1.1
SYMPK-202ENST00000593504 FBLN2P98095 1184 aa21.93■■□□□ 1.1
SYMPK-202ENST00000593504 MROH2BQ7Z745 1585 aa21.91■■□□□ 1.1
SYMPK-202ENST00000593504 WRNQ14191 1432 aaPredicted RBP eCLIP21.87■■□□□ 1.09
SYMPK-202ENST00000593504 NEUROD1Q13562 356 aa21.86■■□□□ 1.09
SYMPK-202ENST00000593504 TRIM52Q96A61 297 aa21.86■■□□□ 1.09
SYMPK-202ENST00000593504 POLR3GLQ9BT43 218 aa21.86■■□□□ 1.09
SYMPK-202ENST00000593504 EEA1Q15075 1411 aa21.84■■□□□ 1.09
SYMPK-202ENST00000593504 ERICH6Q7L0X2 663 aa21.81■■□□□ 1.08
SYMPK-202ENST00000593504 ARID3CA6NKF2 412 aa21.77■■□□□ 1.08
SYMPK-202ENST00000593504 CLIP1P30622 1438 aa21.76■■□□□ 1.07
SYMPK-202ENST00000593504 GOLGA3Q08378 1498 aa21.75■■□□□ 1.07
SYMPK-202ENST00000593504 CEP162Q5TB80 1403 aa21.73■■□□□ 1.07
SYMPK-202ENST00000593504 ZNF316A6NFI3 1004 aaPredicted RBP21.72■■□□□ 1.07
SYMPK-202ENST00000593504 CCDC88BA6NC98 1476 aa21.68■■□□□ 1.06
SYMPK-202ENST00000593504 CNGB1Q14028 1251 aaPredicted RBP21.66■■□□□ 1.06
SYMPK-202ENST00000593504 WIZO95785 1651 aa21.65■■□□□ 1.06
SYMPK-202ENST00000593504 TNIKQ9UKE5 1360 aa21.63■■□□□ 1.05
SYMPK-202ENST00000593504 CEP164Q9UPV0 1460 aa21.59■■□□□ 1.05
SYMPK-202ENST00000593504 KIF27Q86VH2 1401 aa21.56■■□□□ 1.04
SYMPK-202ENST00000593504 SOGA1O94964 1423 aa21.56■■□□□ 1.04
SYMPK-202ENST00000593504 CDK11AQ9UQ88 783 aaPredicted RBP21.55■■□□□ 1.04
SYMPK-202ENST00000593504 TOP2AP11388 1531 aaKnown RBP21.55■■□□□ 1.04
SYMPK-202ENST00000593504 ABCC8Q09428 1581 aa21.55■■□□□ 1.04
SYMPK-202ENST00000593504 SMARCA2P51531 1590 aa21.51■■□□□ 1.03
SYMPK-202ENST00000593504 ZNF777Q9ULD5 760 aaPredicted RBP21.51■■□□□ 1.03
SYMPK-202ENST00000593504 ZNF326Q5BKZ1 582 aaKnown RBP21.48■■□□□ 1.03
SYMPK-202ENST00000593504 SMARCA4P51532 1647 aa21.42■■□□□ 1.02
SYMPK-202ENST00000593504 ANP32CO43423 234 aa21.42■■□□□ 1.02
SYMPK-202ENST00000593504 MTUS2Q5JR59 1369 aa21.4■■□□□ 1.02
SYMPK-202ENST00000593504 CHMP7Q8WUX9 453 aaPredicted RBP21.35■■□□□ 1.01
SYMPK-202ENST00000593504 GTF3C3Q9Y5Q9 886 aa21.34■■□□□ 1.01
SYMPK-202ENST00000593504 CHIC2Q9UKJ5 165 aa21.33■■□□□ 1
SYMPK-202ENST00000593504 TONSLQ96HA7 1378 aa21.31■■□□□ 1
SYMPK-202ENST00000593504 ATAD2BQ9ULI0 1458 aa21.31■■□□□ 1
SYMPK-202ENST00000593504 CUX2O14529 1486 aa21.3■■□□□ 1
SYMPK-202ENST00000593504 SLC4A1APQ9BWU0 796 aaKnown RBP21.29■■□□□ 1
SYMPK-202ENST00000593504 ACIN1Q9UKV3 1341 aaKnown RBP21.25■□□□□ 0.99
SYMPK-202ENST00000593504 CARMIL1Q5VZK9 1371 aa21.24■□□□□ 0.99
SYMPK-202ENST00000593504 VPS8Q8N3P4 1428 aa21.14■□□□□ 0.98
SYMPK-202ENST00000593504 DDX10Q13206 875 aaKnown RBP21.12■□□□□ 0.97
SYMPK-202ENST00000593504 RRP7BPQ9NSQ0 103 aa21.11■□□□□ 0.97
SYMPK-202ENST00000593504 BCANQ96GW7 911 aa21.11■□□□□ 0.97
SYMPK-202ENST00000593504 ERCC6Q03468 1493 aa21.1■□□□□ 0.97
SYMPK-202ENST00000593504 CADPSQ9ULU8 1353 aa21.09■□□□□ 0.97
SYMPK-202ENST00000593504 FHAD1B1AJZ9 1412 aa21.08■□□□□ 0.97
SYMPK-202ENST00000593504 TSPY4P0CV99 314 aa21.07■□□□□ 0.96
SYMPK-202ENST00000593504 TSPY10P0CW01 314 aa21.07■□□□□ 0.96
SYMPK-202ENST00000593504 RUSC2Q8N2Y8 1516 aa21.05■□□□□ 0.96
SYMPK-202ENST00000593504 PDS5BQ9NTI5 1447 aa21.03■□□□□ 0.96
SYMPK-202ENST00000593504 CCNB3Q8WWL7 1395 aa21.02■□□□□ 0.96
SYMPK-202ENST00000593504 PLEKHD1A6NEE1 506 aa21.01■□□□□ 0.95
SYMPK-202ENST00000593504 NPM1P06748 294 aaKnown RBP eCLIP21.01■□□□□ 0.95
SYMPK-202ENST00000593504 EIF4G1Q04637 1599 aaKnown RBP21.01■□□□□ 0.95
SYMPK-202ENST00000593504 MIER1Q8N108 512 aa21■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms