RNA–Protein interactions for RNA: ENST00000600237.5

SYMPK-215, Transcript of symplekin, humanhuman

TSL 5

Gene SYMPK, Length 5,164 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYMPK-215ENST00000600237 DCAF8L2P0C7V8 631 aa25.24■■□□□ 1.63
SYMPK-215ENST00000600237 NISCHQ9Y2I1 1504 aa24.75■■□□□ 1.55
SYMPK-215ENST00000600237 SUPT5HO00267 1087 aaKnown RBP23.8■■□□□ 1.4
SYMPK-215ENST00000600237 SHROOM4Q9ULL8 1493 aa23.45■■□□□ 1.34
SYMPK-215ENST00000600237 PELP1Q8IZL8 1130 aaKnown RBP22.87■■□□□ 1.25
SYMPK-215ENST00000600237 EHMT2Q96KQ7 1210 aa22.78■■□□□ 1.24
SYMPK-215ENST00000600237 APLP2Q06481 763 aa22.67■■□□□ 1.22
SYMPK-215ENST00000600237 PCGF6Q9BYE7 350 aa22.43■■□□□ 1.18
SYMPK-215ENST00000600237 FAM9AQ8IZU1 332 aaPredicted RBP22.39■■□□□ 1.17
SYMPK-215ENST00000600237 ZEB1P37275 1124 aaPredicted RBP22.29■■□□□ 1.16
SYMPK-215ENST00000600237 CENPBP07199 599 aaPredicted RBP22.16■■□□□ 1.14
SYMPK-215ENST00000600237 TRIM41Q8WV44 630 aa22.13■■□□□ 1.13
SYMPK-215ENST00000600237 TTBK1Q5TCY1 1321 aaPredicted RBP22.09■■□□□ 1.13
SYMPK-215ENST00000600237 CCER1Q8TC90 406 aaPredicted RBP22.02■■□□□ 1.11
SYMPK-215ENST00000600237 RANGAP1P46060 587 aaPredicted RBP21.89■■□□□ 1.1
SYMPK-215ENST00000600237 UBTFP17480 764 aaKnown RBP21.8■■□□□ 1.08
SYMPK-215ENST00000600237 ERICH6Q7L0X2 663 aa21.76■■□□□ 1.07
SYMPK-215ENST00000600237 ATP1B4Q9UN42 357 aaPredicted RBP21.76■■□□□ 1.07
SYMPK-215ENST00000600237 TRIM26Q12899 539 aaPredicted RBP21.6■■□□□ 1.05
SYMPK-215ENST00000600237 NEFLP07196 543 aa21.59■■□□□ 1.05
SYMPK-215ENST00000600237 MYT1Q01538 1121 aa21.55■■□□□ 1.04
SYMPK-215ENST00000600237 HRCP23327 699 aa21.47■■□□□ 1.03
SYMPK-215ENST00000600237 ABCC9O60706 1549 aa21.46■■□□□ 1.03
SYMPK-215ENST00000600237 YTHDC1Q96MU7 727 aaKnown RBP21.44■■□□□ 1.02
SYMPK-215ENST00000600237 PPARGC1BQ86YN6 1023 aaKnown RBP21.35■■□□□ 1.01
SYMPK-215ENST00000600237 CHIC1Q5VXU3 224 aa21.33■■□□□ 1
SYMPK-215ENST00000600237 PABPN1Q86U42 306 aaKnown RBP eCLIP21.24■□□□□ 0.991e-6■■■□□ 14.8
SYMPK-215ENST00000600237 LOC105371045A0A1W2PR82 267 aa21.18■□□□□ 0.98
SYMPK-215ENST00000600237 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.14■□□□□ 0.97
SYMPK-215ENST00000600237 HNRNPUL2Q1KMD3 747 aaKnown RBP21.14■□□□□ 0.97
SYMPK-215ENST00000600237 ITGAEP38570 1179 aa21.03■□□□□ 0.96
SYMPK-215ENST00000600237 MYT1LQ9UL68 1186 aa21.01■□□□□ 0.95
SYMPK-215ENST00000600237 DAXXQ9UER7 740 aaPredicted RBP20.87■□□□□ 0.93
SYMPK-215ENST00000600237 DIEXFQ68CQ4 756 aaKnown RBP20.83■□□□□ 0.92
SYMPK-215ENST00000600237 POLR3GLQ9BT43 218 aa20.82■□□□□ 0.92
SYMPK-215ENST00000600237 FAM50AQ14320 339 aaKnown RBP20.55■□□□□ 0.88
SYMPK-215ENST00000600237 FBLN2P98095 1184 aa20.55■□□□□ 0.88
SYMPK-215ENST00000600237 CNGB1Q14028 1251 aaPredicted RBP20.55■□□□□ 0.88
SYMPK-215ENST00000600237 SCRIBQ14160 1630 aa20.49■□□□□ 0.87
SYMPK-215ENST00000600237 RTL5Q5HYW3 569 aaPredicted RBP20.49■□□□□ 0.87
SYMPK-215ENST00000600237 ZCCHC6Q5VYS8 1495 aaKnown RBP20.46■□□□□ 0.87
SYMPK-215ENST00000600237 TRIM52Q96A61 297 aa20.42■□□□□ 0.86
SYMPK-215ENST00000600237 GTF3C3Q9Y5Q9 886 aa20.4■□□□□ 0.86
SYMPK-215ENST00000600237 CCDC180Q9P1Z9 1646 aa20.39■□□□□ 0.85
SYMPK-215ENST00000600237 NEUROD1Q13562 356 aa20.38■□□□□ 0.85
SYMPK-215ENST00000600237 CLSPNQ9HAW4 1339 aa20.38■□□□□ 0.85
SYMPK-215ENST00000600237 ZNF316A6NFI3 1004 aaPredicted RBP20.38■□□□□ 0.85
SYMPK-215ENST00000600237 ANP32CO43423 234 aa20.37■□□□□ 0.85
SYMPK-215ENST00000600237 SLC4A1APQ9BWU0 796 aaKnown RBP20.34■□□□□ 0.85
SYMPK-215ENST00000600237 CSRNP3Q8WYN3 585 aa20.33■□□□□ 0.84
SYMPK-215ENST00000600237 CDK11AQ9UQ88 783 aaPredicted RBP20.23■□□□□ 0.83
SYMPK-215ENST00000600237 P3H3Q8IVL6 736 aa20.22■□□□□ 0.83
SYMPK-215ENST00000600237 BCANQ96GW7 911 aa20.22■□□□□ 0.83
SYMPK-215ENST00000600237 ACIN1Q9UKV3 1341 aaKnown RBP20.2■□□□□ 0.82
SYMPK-215ENST00000600237 ZNF326Q5BKZ1 582 aaKnown RBP20.14■□□□□ 0.81
SYMPK-215ENST00000600237 RB1CC1Q8TDY2 1594 aa20.13■□□□□ 0.81
SYMPK-215ENST00000600237 ARID3CA6NKF2 412 aa20.12■□□□□ 0.81
SYMPK-215ENST00000600237 DCAF1Q9Y4B6 1507 aa20.07■□□□□ 0.8
SYMPK-215ENST00000600237 ZNF777Q9ULD5 760 aaPredicted RBP20■□□□□ 0.79
SYMPK-215ENST00000600237 ZBTB47Q9UFB7 747 aaPredicted RBP19.99■□□□□ 0.79
SYMPK-215ENST00000600237 NPM1P06748 294 aaKnown RBP eCLIP19.94■□□□□ 0.78
SYMPK-215ENST00000600237 NACADO15069 1562 aa19.94■□□□□ 0.78
SYMPK-215ENST00000600237 CANXP27824 592 aaKnown RBP19.9■□□□□ 0.78
SYMPK-215ENST00000600237 ANP32AP39687 249 aaKnown RBP19.9■□□□□ 0.78
SYMPK-215ENST00000600237 TONSLQ96HA7 1378 aa19.87■□□□□ 0.77
SYMPK-215ENST00000600237 NEFMP07197 916 aa19.86■□□□□ 0.77
SYMPK-215ENST00000600237 ESF1Q9H501 851 aaKnown RBP19.83■□□□□ 0.77
SYMPK-215ENST00000600237 CHMP7Q8WUX9 453 aaPredicted RBP19.81■□□□□ 0.76
SYMPK-215ENST00000600237 FKBP8Q14318 412 aa19.77■□□□□ 0.76
SYMPK-215ENST00000600237 RSF1Q96T23 1441 aaPredicted RBP19.75■□□□□ 0.75
SYMPK-215ENST00000600237 HNRNPUQ00839 825 aaKnown RBP eCLIP19.73■□□□□ 0.75
SYMPK-215ENST00000600237 DDX10Q13206 875 aaKnown RBP19.72■□□□□ 0.75
SYMPK-215ENST00000600237 BAZ1BQ9UIG0 1483 aaKnown RBP19.71■□□□□ 0.75
SYMPK-215ENST00000600237 STAG3Q9UJ98 1225 aa19.65■□□□□ 0.74
SYMPK-215ENST00000600237 NPM2Q86SE8 214 aaKnown RBP19.64■□□□□ 0.73
SYMPK-215ENST00000600237 CHGAP10645 457 aaKnown RBP19.63■□□□□ 0.73
SYMPK-215ENST00000600237 MTUS2Q5JR59 1369 aa19.62■□□□□ 0.73
SYMPK-215ENST00000600237 TSPY4P0CV99 314 aa19.61■□□□□ 0.73
SYMPK-215ENST00000600237 TSPY10P0CW01 314 aa19.61■□□□□ 0.73
SYMPK-215ENST00000600237 FAM9BQ8IZU0 186 aa19.61■□□□□ 0.73
SYMPK-215ENST00000600237 SLC24A1O60721 1099 aa19.59■□□□□ 0.73
SYMPK-215ENST00000600237 EEA1Q15075 1411 aa19.58■□□□□ 0.73
SYMPK-215ENST00000600237 CHIC2Q9UKJ5 165 aa19.57■□□□□ 0.72
SYMPK-215ENST00000600237 BCL11AQ9H165 835 aa19.57■□□□□ 0.72
SYMPK-215ENST00000600237 UPF2Q9HAU5 1272 aaKnown RBP19.56■□□□□ 0.72
SYMPK-215ENST00000600237 WRNQ14191 1432 aaPredicted RBP eCLIP19.56■□□□□ 0.72
SYMPK-215ENST00000600237 CLIP1P30622 1438 aa19.56■□□□□ 0.72
SYMPK-215ENST00000600237 TMC1Q8TDI8 760 aa19.55■□□□□ 0.72
SYMPK-215ENST00000600237 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.53■□□□□ 0.727e-7■■■□□ 17.3
SYMPK-215ENST00000600237 CCDC136Q96JN2 1154 aa19.53■□□□□ 0.72
SYMPK-215ENST00000600237 BAZ1AQ9NRL2 1556 aaPredicted RBP19.52■□□□□ 0.72
SYMPK-215ENST00000600237 PLPPR3Q6T4P5 718 aa19.51■□□□□ 0.71
SYMPK-215ENST00000600237 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.5■□□□□ 0.71
SYMPK-215ENST00000600237 ANP32BQ92688 251 aaKnown RBP19.5■□□□□ 0.71
SYMPK-215ENST00000600237 MIER1Q8N108 512 aa19.5■□□□□ 0.71
SYMPK-215ENST00000600237 MRS2Q9HD23 443 aa19.49■□□□□ 0.71
SYMPK-215ENST00000600237 KIF27Q86VH2 1401 aa19.48■□□□□ 0.71
SYMPK-215ENST00000600237 HSP90AA1P07900 732 aaKnown RBP19.47■□□□□ 0.71
SYMPK-215ENST00000600237 PLEKHD1A6NEE1 506 aa19.47■□□□□ 0.71
SYMPK-215ENST00000600237 ERCC6Q03468 1493 aa19.46■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms