RNA–Protein interactions for RNA: ENST00000254066.9

RARA-201, Transcript of retinoic acid receptor alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RARA, Length 2,414 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RARA-201ENST00000254066 NISCHQ9Y2I1 1504 aa39.51■■■■□ 3.92
RARA-201ENST00000254066 CCDC180Q9P1Z9 1646 aa35.37■■■■□ 3.25
RARA-201ENST00000254066 ABCC9O60706 1549 aa34.83■■■■□ 3.17
RARA-201ENST00000254066 HRCP23327 699 aa34.54■■■■□ 3.12
RARA-201ENST00000254066 PELP1Q8IZL8 1130 aaKnown RBP34.03■■■■□ 3.04
RARA-201ENST00000254066 SHROOM4Q9ULL8 1493 aa33.57■■■□□ 2.96
RARA-201ENST00000254066 SUPT5HO00267 1087 aaKnown RBP33.55■■■□□ 2.96
RARA-201ENST00000254066 MYT1Q01538 1121 aa33.51■■■□□ 2.96
RARA-201ENST00000254066 MYO15BQ96JP2 1530 aa33.5■■■□□ 2.95
RARA-201ENST00000254066 PCGF6Q9BYE7 350 aa33.49■■■□□ 2.95
RARA-201ENST00000254066 RB1CC1Q8TDY2 1594 aa33.47■■■□□ 2.95
RARA-201ENST00000254066 CHIC1Q5VXU3 224 aa33.37■■■□□ 2.93
RARA-201ENST00000254066 NACADO15069 1562 aa33.36■■■□□ 2.93
RARA-201ENST00000254066 PPARGC1BQ86YN6 1023 aaKnown RBP33.33■■■□□ 2.93
RARA-201ENST00000254066 DCAF1Q9Y4B6 1507 aa33.29■■■□□ 2.92
RARA-201ENST00000254066 DCAF8L2P0C7V8 631 aa33.04■■■□□ 2.88
RARA-201ENST00000254066 ZCCHC6Q5VYS8 1495 aaKnown RBP32.99■■■□□ 2.87
RARA-201ENST00000254066 TRIM26Q12899 539 aaPredicted RBP32.77■■■□□ 2.84
RARA-201ENST00000254066 ZEB1P37275 1124 aaPredicted RBP32.76■■■□□ 2.84
RARA-201ENST00000254066 UNC13AQ9UPW8 1703 aa32.59■■■□□ 2.81
RARA-201ENST00000254066 SCAF1Q9H7N4 1312 aaKnown RBP32.5■■■□□ 2.79
RARA-201ENST00000254066 PABPN1Q86U42 306 aaKnown RBP eCLIP32.43■■■□□ 2.78
RARA-201ENST00000254066 BICRAQ9NZM4 1560 aa32.38■■■□□ 2.77
RARA-201ENST00000254066 LOC105371045A0A1W2PR82 267 aa32.29■■■□□ 2.76
RARA-201ENST00000254066 DNAJC5BQ9UF47 199 aa32.26■■■□□ 2.76
RARA-201ENST00000254066 TTBK1Q5TCY1 1321 aaPredicted RBP32.21■■■□□ 2.75
RARA-201ENST00000254066 SCRIBQ14160 1630 aa32.09■■■□□ 2.73
RARA-201ENST00000254066 ACIN1Q9UKV3 1341 aaKnown RBP31.87■■■□□ 2.69
RARA-201ENST00000254066 EIF4G1Q04637 1599 aaKnown RBP31.59■■■□□ 2.65
RARA-201ENST00000254066 NEUROD1Q13562 356 aa31.59■■■□□ 2.65
RARA-201ENST00000254066 CENPBP07199 599 aaPredicted RBP31.57■■■□□ 2.64
RARA-201ENST00000254066 CC2D2AQ9P2K1 1620 aa31.54■■■□□ 2.64
RARA-201ENST00000254066 GTF3C3Q9Y5Q9 886 aa31.44■■■□□ 2.62
RARA-201ENST00000254066 CECR2Q9BXF3 1484 aa31.4■■■□□ 2.62
RARA-201ENST00000254066 TRIM41Q8WV44 630 aa31.28■■■□□ 2.6
RARA-201ENST00000254066 DIEXFQ68CQ4 756 aaKnown RBP31.23■■■□□ 2.59
RARA-201ENST00000254066 CCER1Q8TC90 406 aaPredicted RBP31.09■■■□□ 2.57
RARA-201ENST00000254066 RSF1Q96T23 1441 aaPredicted RBP31.05■■■□□ 2.56
RARA-201ENST00000254066 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.98■■■□□ 2.55
RARA-201ENST00000254066 FAM9AQ8IZU1 332 aaPredicted RBP30.89■■■□□ 2.54
RARA-201ENST00000254066 PRKCSHP14314 528 aaPredicted RBP30.86■■■□□ 2.53
RARA-201ENST00000254066 NCAPD3P42695 1498 aa30.76■■■□□ 2.51
RARA-201ENST00000254066 SMARCA4P51532 1647 aa30.73■■■□□ 2.51
RARA-201ENST00000254066 ZNF316A6NFI3 1004 aaPredicted RBP30.73■■■□□ 2.51
RARA-201ENST00000254066 BAZ1AQ9NRL2 1556 aaPredicted RBP30.69■■■□□ 2.5
RARA-201ENST00000254066 SMARCA2P51531 1590 aa30.68■■■□□ 2.5
RARA-201ENST00000254066 ATAD2BQ9ULI0 1458 aa30.67■■■□□ 2.5
RARA-201ENST00000254066 WRNQ14191 1432 aaPredicted RBP eCLIP30.66■■■□□ 2.5
RARA-201ENST00000254066 HMGXB3Q12766 1538 aa30.59■■■□□ 2.49
RARA-201ENST00000254066 ERICH6Q7L0X2 663 aa30.56■■■□□ 2.48
RARA-201ENST00000254066 CLSPNQ9HAW4 1339 aa30.53■■■□□ 2.48
RARA-201ENST00000254066 PEG3Q9GZU2 1588 aa30.5■■■□□ 2.47
RARA-201ENST00000254066 EHMT2Q96KQ7 1210 aa30.44■■■□□ 2.46
RARA-201ENST00000254066 BCL11AQ9H165 835 aa30.42■■■□□ 2.46
RARA-201ENST00000254066 BAZ1BQ9UIG0 1483 aaKnown RBP30.4■■■□□ 2.46
RARA-201ENST00000254066 MROH2BQ7Z745 1585 aa30.38■■■□□ 2.45
RARA-201ENST00000254066 YTHDC1Q96MU7 727 aaKnown RBP30.36■■■□□ 2.45
RARA-201ENST00000254066 APLP2Q06481 763 aa30.33■■■□□ 2.45
RARA-201ENST00000254066 MIER1Q8N108 512 aa30.32■■■□□ 2.44
RARA-201ENST00000254066 CEP162Q5TB80 1403 aa30.19■■■□□ 2.42
RARA-201ENST00000254066 TNIKQ9UKE5 1360 aa30.14■■■□□ 2.42
RARA-201ENST00000254066 ERCC6Q03468 1493 aa30.13■■■□□ 2.41
RARA-201ENST00000254066 ANP32EQ9BTT0 268 aa30.11■■■□□ 2.41
RARA-201ENST00000254066 CUX2O14529 1486 aa30.03■■■□□ 2.4
RARA-201ENST00000254066 LAMC3Q9Y6N6 1575 aa30.03■■■□□ 2.4
RARA-201ENST00000254066 SUPT16HQ9Y5B9 1047 aaKnown RBP30.02■■■□□ 2.4
RARA-201ENST00000254066 WIZO95785 1651 aa30.01■■■□□ 2.39
RARA-201ENST00000254066 NESP48681 1621 aa30■■■□□ 2.39
RARA-201ENST00000254066 EEA1Q15075 1411 aa29.99■■■□□ 2.39
RARA-201ENST00000254066 TSHZ2Q9NRE2 1034 aa29.9■■■□□ 2.38
RARA-201ENST00000254066 PDS5BQ9NTI5 1447 aa29.84■■■□□ 2.37
RARA-201ENST00000254066 CADPSQ9ULU8 1353 aa29.82■■■□□ 2.36
RARA-201ENST00000254066 CCDC88BA6NC98 1476 aa29.8■■■□□ 2.36
RARA-201ENST00000254066 TOP2AP11388 1531 aaKnown RBP29.76■■■□□ 2.36
RARA-201ENST00000254066 GOLGA3Q08378 1498 aa29.72■■■□□ 2.35
RARA-201ENST00000254066 THOC2Q8NI27 1593 aaKnown RBP29.71■■■□□ 2.35
RARA-201ENST00000254066 ABCC8Q09428 1581 aa29.69■■■□□ 2.34
RARA-201ENST00000254066 CSRNP3Q8WYN3 585 aa29.69■■■□□ 2.34
RARA-201ENST00000254066 KIF21AQ7Z4S6 1674 aa29.67■■■□□ 2.34
RARA-201ENST00000254066 SLC24A1O60721 1099 aa29.67■■■□□ 2.34
RARA-201ENST00000254066 SOGA1O94964 1423 aa29.66■■■□□ 2.34
RARA-201ENST00000254066 HNRNPUL2Q1KMD3 747 aaKnown RBP29.6■■■□□ 2.33
RARA-201ENST00000254066 UBTFP17480 764 aaKnown RBP29.58■■■□□ 2.33
RARA-201ENST00000254066 CFTRP13569 1480 aa29.56■■■□□ 2.32
RARA-201ENST00000254066 MRC2Q9UBG0 1479 aa29.52■■■□□ 2.32
RARA-201ENST00000254066 DNAJC5Q9H3Z4 198 aa29.5■■■□□ 2.31
RARA-201ENST00000254066 CEP164Q9UPV0 1460 aa29.48■■■□□ 2.31
RARA-201ENST00000254066 VPS8Q8N3P4 1428 aa29.46■■■□□ 2.31
RARA-201ENST00000254066 KIF21BO75037 1637 aa29.45■■■□□ 2.31
RARA-201ENST00000254066 FANCD2Q9BXW9 1451 aa29.45■■■□□ 2.31
RARA-201ENST00000254066 WDR62O43379 1518 aa29.44■■■□□ 2.3
RARA-201ENST00000254066 RUSC2Q8N2Y8 1516 aa29.41■■■□□ 2.3
RARA-201ENST00000254066 DHX57Q6P158 1386 aaKnown RBP29.39■■■□□ 2.3
RARA-201ENST00000254066 CLIP1P30622 1438 aa29.37■■■□□ 2.29
RARA-201ENST00000254066 PRDM2Q13029 1718 aa29.32■■■□□ 2.28
RARA-201ENST00000254066 RBM19Q9Y4C8 960 aaKnown RBP29.2■■■□□ 2.27
RARA-201ENST00000254066 URB2Q14146 1524 aaKnown RBP29.15■■■□□ 2.26
RARA-201ENST00000254066 FKBP8Q14318 412 aa29.12■■■□□ 2.25
RARA-201ENST00000254066 NEFLP07196 543 aa29.06■■■□□ 2.24
RARA-201ENST00000254066 BCANQ96GW7 911 aa29.01■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms