Protein–RNA interactions for Protein: P23396

RPS3, 40S ribosomal protein S3, humanhuman

Known RBP eCLIP

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS3P23396 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.141e-6■■□□□ 13
RPS3P23396 FAM213A-204ENST00000372188 829 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.21e-6■■□□□ 13
RPS3P23396 FAM213A-205ENST00000606162 5859 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.231e-6■■□□□ 13
RPS3P23396 FAM213A-201ENST00000372181 2058 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.411e-6■■□□□ 13
RPS3P23396 RNASET2-208ENST00000496851 881 ntTSL 59.92□□□□□ -0.821e-8■■□□□ 13
RPS3P23396 RNASET2-211ENST00000509073 433 ntTSL 27.4□□□□□ -1.221e-8■■□□□ 13
RPS3P23396 CSDE1-215ENST00000533818 552 ntTSL 49.45□□□□□ -0.91e-6■■□□□ 13
RPS3P23396 CSDE1-212ENST00000529046 571 ntTSL 44.04□□□□□ -1.761e-6■■□□□ 13
RPS3P23396 CSDE1-208ENST00000524652 562 ntTSL 42.79□□□□□ -1.961e-6■■□□□ 13
RPS3P23396 CSDE1-211ENST00000525970 503 ntTSL 41.99□□□□□ -2.091e-6■■□□□ 13
RPS3P23396 CSDE1-209ENST00000525132 521 ntTSL 51.61□□□□□ -2.151e-6■■□□□ 13
RPS3P23396 CSDE1-210ENST00000525878 626 ntTSL 4-0.36□□□□□ -2.471e-6■■□□□ 13
RPS3P23396 HM13-219ENST00000487964 902 ntTSL 516.08■□□□□ 0.166e-11■■□□□ 13
RPS3P23396 HM13-213ENST00000469126 756 ntTSL 514.28□□□□□ -0.126e-11■■□□□ 13
RPS3P23396 HM13-214ENST00000472128 865 ntTSL 59.82□□□□□ -0.846e-11■■□□□ 13
RPS3P23396 RPL11-201ENST00000374550 634 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.922e-9■■□□□ 13
RPS3P23396 DDX5-212ENST00000579461 814 ntTSL 35.38□□□□□ -1.552e-10■■□□□ 12.9
RPS3P23396 IARS-203ENST00000395554 1103 ntTSL 513.13□□□□□ -0.315e-7■■□□□ 12.9
RPS3P23396 ACAA1-207ENST00000440176 1328 ntTSL 220.54■□□□□ 0.884e-8■■□□□ 12.9
RPS3P23396 PROC-203ENST00000409048 1586 ntTSL 5 BASIC25.31■■□□□ 1.645e-9■■□□□ 12.9
RPS3P23396 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.335e-9■■□□□ 12.9
RPS3P23396 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC15.95■□□□□ 0.143e-17■■□□□ 12.9
RPS3P23396 EIF3E-212ENST00000521614 1990 ntTSL 22.52□□□□□ -2.018e-7■■□□□ 12.9
RPS3P23396 NPTN-206ENST00000563753 599 ntTSL 214.44□□□□□ -0.12e-11■■□□□ 12.9
RPS3P23396 P3H4-204ENST00000467164 723 ntTSL 1 (best)16.23■□□□□ 0.196e-8■■□□□ 12.9
RPS3P23396 P3H4-208ENST00000592026 662 ntAPPRIS ALT2 TSL 514.81□□□□□ -0.046e-8■■□□□ 12.9
RPS3P23396 ENTPD6-207ENST00000425813 945 ntTSL 518.53■□□□□ 0.561e-6■■□□□ 12.9
RPS3P23396 TGFBI-210ENST00000509749 437 ntTSL 27.16□□□□□ -1.268e-9■■□□□ 12.9
RPS3P23396 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC14.87□□□□□ -0.031e-7■■□□□ 12.9
RPS3P23396 NAMPT-201ENST00000222553 4582 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.611e-6■■□□□ 12.9
RPS3P23396 NAMPT-203ENST00000393618 592 ntTSL 410.71□□□□□ -0.691e-6■■□□□ 12.9
RPS3P23396 NAMPT-206ENST00000441045 589 ntTSL 49.69□□□□□ -0.861e-6■■□□□ 12.9
RPS3P23396 YIPF4-201ENST00000238831 11949 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.083e-15■■□□□ 12.9
RPS3P23396 NAMPT-213ENST00000491027 1009 ntTSL 26.93□□□□□ -1.31e-6■■□□□ 12.9
RPS3P23396 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC3.53□□□□□ -1.841e-6■■□□□ 12.9
RPS3P23396 NAMPT-211ENST00000489358 581 ntTSL 33.03□□□□□ -1.921e-6■■□□□ 12.9
RPS3P23396 HK1-206ENST00000448642 3868 ntTSL 5 BASIC9.55□□□□□ -0.882e-6■■□□□ 12.9
RPS3P23396 HK1-203ENST00000360289 3961 ntTSL 5 BASIC8.19□□□□□ -1.12e-6■■□□□ 12.9
RPS3P23396 AAAS-203ENST00000546393 832 ntTSL 510.82□□□□□ -0.684e-6■■□□□ 12.9
RPS3P23396 AAAS-207ENST00000547520 769 ntTSL 310.57□□□□□ -0.724e-6■■□□□ 12.9
RPS3P23396 CANX-210ENST00000505090 485 ntTSL 29.06□□□□□ -0.961e-55■■□□□ 12.9
RPS3P23396 EMC1-210ENST00000486405 583 ntTSL 26.7□□□□□ -1.347e-12■■□□□ 12.9
RPS3P23396 EMC1-204ENST00000462505 524 ntTSL 44.54□□□□□ -1.687e-12■■□□□ 12.9
RPS3P23396 EMC1-209ENST00000486238 425 ntTSL 33.97□□□□□ -1.777e-12■■□□□ 12.9
RPS3P23396 SUB1-213ENST00000515355 771 ntAPPRIS P1 TSL 3 BASIC11.2□□□□□ -0.625e-7■■□□□ 12.9
RPS3P23396 SUB1-209ENST00000511615 1658 ntTSL 1 (best)9.33□□□□□ -0.925e-7■■□□□ 12.9
RPS3P23396 SUB1-201ENST00000265073 3507 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.045e-7■■□□□ 12.9
RPS3P23396 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC3.13□□□□□ -1.915e-7■■□□□ 12.9
RPS3P23396 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC2.21□□□□□ -2.065e-7■■□□□ 12.9
RPS3P23396 SUB1-212ENST00000513013 493 ntTSL 51.51□□□□□ -2.175e-7■■□□□ 12.9
RPS3P23396 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC1.23□□□□□ -2.215e-7■■□□□ 12.9
RPS3P23396 LAMC1-205ENST00000484114 657 ntTSL 38.88□□□□□ -0.992e-9■■□□□ 12.9
RPS3P23396 COL18A1-201ENST00000342220 3386 ntTSL 212.61□□□□□ -0.393e-12■■□□□ 12.9
RPS3P23396 RPL11-205ENST00000482370 879 ntTSL 1 (best)8.68□□□□□ -1.022e-19■■□□□ 12.9
RPS3P23396 PCK2-214ENST00000560736 897 ntTSL 321.62■■□□□ 1.051e-9■■□□□ 12.9
RPS3P23396 PCK2-211ENST00000559837 756 ntTSL 316.59■□□□□ 0.251e-9■■□□□ 12.9
RPS3P23396 TUBA1C-206ENST00000549818 536 ntTSL 49.4□□□□□ -0.96e-9■■□□□ 12.9
RPS3P23396 ERBB2-222ENST00000584908 1316 ntTSL 1 (best)15.88■□□□□ 0.132e-14■■□□□ 12.9
RPS3P23396 RPL8-209ENST00000529920 876 ntTSL 216.73■□□□□ 0.271e-8■■□□□ 12.9
RPS3P23396 RPL8-206ENST00000528296 540 ntTSL 316.65■□□□□ 0.261e-8■■□□□ 12.9
RPS3P23396 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.151e-8■■□□□ 12.9
RPS3P23396 RPL8-213ENST00000533397 730 ntTSL 215.92■□□□□ 0.141e-8■■□□□ 12.9
RPS3P23396 NDRG1-217ENST00000521414 2349 ntTSL 214.37□□□□□ -0.111e-17■■□□□ 12.9
RPS3P23396 DSP-202ENST00000418664 7812 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.536e-8■■□□□ 12.9
RPS3P23396 DSP-201ENST00000379802 9796 ntAPPRIS P3 TSL 1 (best) BASIC9.8□□□□□ -0.846e-8■■□□□ 12.9
RPS3P23396 HNRNPK-210ENST00000492865 528 ntTSL 22.85□□□□□ -1.952e-11■■□□□ 12.9
RPS3P23396 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.041e-6■■□□□ 12.9
RPS3P23396 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.051e-6■■□□□ 12.9
RPS3P23396 PVR-205ENST00000425690 3325 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.21e-6■■□□□ 12.9
RPS3P23396 PVR-201ENST00000187830 3132 ntTSL 213.7□□□□□ -0.221e-6■■□□□ 12.9
RPS3P23396 ADRM1-202ENST00000462554 735 ntTSL 324.86■■□□□ 1.579e-9■■□□□ 12.9
RPS3P23396 ADRM1-203ENST00000465805 630 ntTSL 214.73□□□□□ -0.059e-9■■□□□ 12.9
RPS3P23396 SPTAN1-226ENST00000631315 581 ntTSL 212.84□□□□□ -0.359e-7■■□□□ 12.9
RPS3P23396 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.151e-9■■□□□ 12.9
RPS3P23396 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC15.28■□□□□ 0.041e-9■■□□□ 12.9
RPS3P23396 SCAP-202ENST00000320017 3430 ntTSL 214.72□□□□□ -0.051e-9■■□□□ 12.9
RPS3P23396 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC14.37□□□□□ -0.111e-9■■□□□ 12.9
RPS3P23396 SCAP-207ENST00000441517 3748 ntTSL 214.37□□□□□ -0.111e-9■■□□□ 12.9
RPS3P23396 EIF3G-207ENST00000589009 1522 ntTSL 214.83□□□□□ -0.042e-8■■□□□ 12.9
RPS3P23396 EIF3G-206ENST00000588709 828 ntTSL 513.33□□□□□ -0.282e-8■■□□□ 12.9
RPS3P23396 EIF3G-202ENST00000587146 709 ntTSL 512.6□□□□□ -0.392e-8■■□□□ 12.9
RPS3P23396 UNC13D-201ENST00000207549 4393 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.362e-6■■□□□ 12.9
RPS3P23396 UNC13D-202ENST00000412096 3648 ntTSL 2 BASIC11.86□□□□□ -0.512e-6■■□□□ 12.9
RPS3P23396 CARHSP1-213ENST00000569398 442 ntTSL 214.31□□□□□ -0.122e-7■■□□□ 12.9
RPS3P23396 HNRNPL-211ENST00000601047 1127 ntTSL 515.18■□□□□ 0.022e-9■■□□□ 12.9
RPS3P23396 RNF114-207ENST00000624666 2006 ntTSL 210.4□□□□□ -0.754e-6■■□□□ 12.9
RPS3P23396 WDR13-212ENST00000498631 859 ntTSL 219.58■□□□□ 0.724e-7■■□□□ 12.9
RPS3P23396 FBLN1-203ENST00000340923 2348 ntTSL 1 (best) BASIC12.32□□□□□ -0.448e-9■■□□□ 12.9
RPS3P23396 MYH9-208ENST00000475726 768 ntTSL 314.7□□□□□ -0.061e-6■■□□□ 12.9
RPS3P23396 DAP3-215ENST00000475056 682 ntTSL 34.59□□□□□ -1.679e-7■■□□□ 12.9
RPS3P23396 DAP3-220ENST00000490249 710 ntTSL 32.99□□□□□ -1.939e-7■■□□□ 12.9
RPS3P23396 OS9-219ENST00000551285 583 ntTSL 312.35□□□□□ -0.438e-7■■□□□ 12.9
RPS3P23396 OS9-221ENST00000552423 609 ntTSL 312.35□□□□□ -0.438e-7■■□□□ 12.9
RPS3P23396 CTSB-216ENST00000530290 498 ntTSL 35.26□□□□□ -1.575e-13■■□□□ 12.9
RPS3P23396 CLN3-234ENST00000568472 1011 ntTSL 321.58■■□□□ 1.054e-6■■□□□ 12.9
RPS3P23396 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC21.24■□□□□ 0.994e-6■■□□□ 12.9
RPS3P23396 CLN3-209ENST00000561689 1957 ntTSL 221.06■□□□□ 0.964e-6■■□□□ 12.9
RPS3P23396 AC138894.1-206ENST00000568224 1721 ntTSL 1 (best)20.92■□□□□ 0.944e-6■■□□□ 12.9
RPS3P23396 CLN3-212ENST00000564574 1159 ntTSL 220.4■□□□□ 0.864e-6■■□□□ 12.9
RPS3P23396 CLN3-245ENST00000636172 1536 ntTSL 220.35■□□□□ 0.854e-6■■□□□ 12.9
Retrieved 100 of 24,271 protein–RNA pairs in 203.6 ms