RNA–Protein interactions for RNA: ENST00000533818.5

CSDE1-215, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-215ENST00000533818 NISCHQ9Y2I1 1504 aa27.64■■■□□ 2.02
CSDE1-215ENST00000533818 ABCC9O60706 1549 aa26.35■■□□□ 1.81
CSDE1-215ENST00000533818 DNAJC5BQ9UF47 199 aa25.75■■□□□ 1.71
CSDE1-215ENST00000533818 CCDC180Q9P1Z9 1646 aa25.15■■□□□ 1.62
CSDE1-215ENST00000533818 RB1CC1Q8TDY2 1594 aa24.54■■□□□ 1.52
CSDE1-215ENST00000533818 PABPN1Q86U42 306 aaKnown RBP eCLIP24.46■■□□□ 1.51
CSDE1-215ENST00000533818 DNAJC5Q9H3Z4 198 aa24.43■■□□□ 1.5
CSDE1-215ENST00000533818 NACADO15069 1562 aa24.12■■□□□ 1.45
CSDE1-215ENST00000533818 DCAF8L2P0C7V8 631 aa23.99■■□□□ 1.43
CSDE1-215ENST00000533818 UNC13AQ9UPW8 1703 aa23.85■■□□□ 1.41
CSDE1-215ENST00000533818 CECR2Q9BXF3 1484 aa23.85■■□□□ 1.41
CSDE1-215ENST00000533818 BICRAQ9NZM4 1560 aa23.85■■□□□ 1.41
CSDE1-215ENST00000533818 CC2D2AQ9P2K1 1620 aa23.68■■□□□ 1.38
CSDE1-215ENST00000533818 MYO15BQ96JP2 1530 aa23.41■■□□□ 1.34
CSDE1-215ENST00000533818 SHROOM4Q9ULL8 1493 aa23.41■■□□□ 1.34
CSDE1-215ENST00000533818 EIF4G1Q04637 1599 aaKnown RBP23.36■■□□□ 1.33
CSDE1-215ENST00000533818 CUX2O14529 1486 aa23.11■■□□□ 1.29
CSDE1-215ENST00000533818 TRIM41Q8WV44 630 aa22.95■■□□□ 1.26
CSDE1-215ENST00000533818 SCRIBQ14160 1630 aa22.93■■□□□ 1.26
CSDE1-215ENST00000533818 ERCC6Q03468 1493 aa22.85■■□□□ 1.25
CSDE1-215ENST00000533818 DCAF1Q9Y4B6 1507 aa22.72■■□□□ 1.23
CSDE1-215ENST00000533818 ZCCHC6Q5VYS8 1495 aaKnown RBP22.64■■□□□ 1.21
CSDE1-215ENST00000533818 NCAPD3P42695 1498 aa22.34■■□□□ 1.17
CSDE1-215ENST00000533818 NESP48681 1621 aa22.32■■□□□ 1.16
CSDE1-215ENST00000533818 THOC2Q8NI27 1593 aaKnown RBP22.2■■□□□ 1.14
CSDE1-215ENST00000533818 ATAD2BQ9ULI0 1458 aa22.1■■□□□ 1.13
CSDE1-215ENST00000533818 SMARCA2P51531 1590 aa22.06■■□□□ 1.12
CSDE1-215ENST00000533818 OSCARQ8IYS5 282 aa22.01■■□□□ 1.11
CSDE1-215ENST00000533818 HMGXB3Q12766 1538 aa21.99■■□□□ 1.11
CSDE1-215ENST00000533818 PDS5BQ9NTI5 1447 aa21.93■■□□□ 1.1
CSDE1-215ENST00000533818 LAMC3Q9Y6N6 1575 aa21.93■■□□□ 1.1
CSDE1-215ENST00000533818 KIF21AQ7Z4S6 1674 aa21.88■■□□□ 1.09
CSDE1-215ENST00000533818 AEBP2Q6ZN18 517 aaPredicted RBP21.87■■□□□ 1.09
CSDE1-215ENST00000533818 BAZ1AQ9NRL2 1556 aaPredicted RBP21.87■■□□□ 1.09
CSDE1-215ENST00000533818 BAZ1BQ9UIG0 1483 aaKnown RBP21.83■■□□□ 1.08
CSDE1-215ENST00000533818 MRC2Q9UBG0 1479 aa21.77■■□□□ 1.07
CSDE1-215ENST00000533818 SMARCA4P51532 1647 aa21.74■■□□□ 1.07
CSDE1-215ENST00000533818 TRHP20396 242 aaPredicted RBP21.71■■□□□ 1.07
CSDE1-215ENST00000533818 WDR62O43379 1518 aa21.7■■□□□ 1.07
CSDE1-215ENST00000533818 RIMBP3CA6NJZ7 1639 aa21.68■■□□□ 1.06
CSDE1-215ENST00000533818 RIMBP3BA6NNM3 1639 aa21.68■■□□□ 1.06
CSDE1-215ENST00000533818 RIMBP3Q9UFD9 1639 aa21.68■■□□□ 1.06
CSDE1-215ENST00000533818 CADPSQ9ULU8 1353 aa21.63■■□□□ 1.05
CSDE1-215ENST00000533818 CYB5RLQ6IPT4 315 aa21.58■■□□□ 1.05
CSDE1-215ENST00000533818 ARHGEF11O15085 1522 aa21.54■■□□□ 1.04
CSDE1-215ENST00000533818 PEG3Q9GZU2 1588 aa21.52■■□□□ 1.04
CSDE1-215ENST00000533818 CEP164Q9UPV0 1460 aa21.46■■□□□ 1.03
CSDE1-215ENST00000533818 FANCD2Q9BXW9 1451 aa21.36■■□□□ 1.01
CSDE1-215ENST00000533818 MROH2BQ7Z745 1585 aa21.29■■□□□ 1
CSDE1-215ENST00000533818 ARAP1Q96P48 1450 aa21.26■□□□□ 0.99
CSDE1-215ENST00000533818 URB2Q14146 1524 aaKnown RBP21.24■□□□□ 0.99
CSDE1-215ENST00000533818 ZNF608Q9ULD9 1512 aaPredicted RBP21.16■□□□□ 0.98
CSDE1-215ENST00000533818 CFTRP13569 1480 aa21.12■□□□□ 0.97
CSDE1-215ENST00000533818 IFT140Q96RY7 1462 aa21.08■□□□□ 0.97
CSDE1-215ENST00000533818 ILDR1Q86SU0 546 aaPredicted RBP21.08■□□□□ 0.97
CSDE1-215ENST00000533818 RSF1Q96T23 1441 aaPredicted RBP21.07■□□□□ 0.96
CSDE1-215ENST00000533818 FBLN2P98095 1184 aa21.04■□□□□ 0.96
CSDE1-215ENST00000533818 WIZO95785 1651 aa20.94■□□□□ 0.94
CSDE1-215ENST00000533818 CHD1O14646 1710 aa20.92■□□□□ 0.94
CSDE1-215ENST00000533818 EIF4G3O43432 1585 aaKnown RBP20.9■□□□□ 0.94
CSDE1-215ENST00000533818 AQRO60306 1485 aaKnown RBP eCLIP20.88■□□□□ 0.933e-7■■□□□ 11.6
CSDE1-215ENST00000533818 TOPBP1Q92547 1522 aa20.81■□□□□ 0.92
CSDE1-215ENST00000533818 CLASP1Q7Z460 1538 aa20.71■□□□□ 0.91
CSDE1-215ENST00000533818 ABCC8Q09428 1581 aa20.71■□□□□ 0.91
CSDE1-215ENST00000533818 CHMP7Q8WUX9 453 aaPredicted RBP20.69■□□□□ 0.9
CSDE1-215ENST00000533818 TARBP1Q13395 1621 aaKnown RBP20.67■□□□□ 0.9
CSDE1-215ENST00000533818 GAPVD1Q14C86 1478 aa20.65■□□□□ 0.9
CSDE1-215ENST00000533818 PRDM2Q13029 1718 aa20.61■□□□□ 0.89
CSDE1-215ENST00000533818 SYNJ1O43426 1573 aa20.61■□□□□ 0.89
CSDE1-215ENST00000533818 TOP2AP11388 1531 aaKnown RBP20.61■□□□□ 0.89
CSDE1-215ENST00000533818 TDRD9Q8NDG6 1382 aaKnown RBP20.6■□□□□ 0.89
CSDE1-215ENST00000533818 DNMBPQ6XZF7 1577 aa20.6■□□□□ 0.89
CSDE1-215ENST00000533818 KDM4FA0A1W2PPD8 638 aa20.59■□□□□ 0.89
CSDE1-215ENST00000533818 SNAPC4Q5SXM2 1469 aa20.58■□□□□ 0.89
CSDE1-215ENST00000533818 POLA1P09884 1462 aaPredicted RBP20.53■□□□□ 0.88
CSDE1-215ENST00000533818 RAD54L2Q9Y4B4 1467 aa20.51■□□□□ 0.87
CSDE1-215ENST00000533818 SOGA1O94964 1423 aa20.49■□□□□ 0.87
CSDE1-215ENST00000533818 MAGI1Q96QZ7 1491 aaPredicted RBP20.47■□□□□ 0.87
CSDE1-215ENST00000533818 CCDC88BA6NC98 1476 aa20.45■□□□□ 0.86
CSDE1-215ENST00000533818 SYNJ2O15056 1496 aa20.43■□□□□ 0.86
CSDE1-215ENST00000533818 GRIN2BQ13224 1484 aa20.39■□□□□ 0.85
CSDE1-215ENST00000533818 FAM69CQ0P6D2 419 aa20.34■□□□□ 0.85
CSDE1-215ENST00000533818 WDR97A6NE52 1622 aa20.34■□□□□ 0.85
CSDE1-215ENST00000533818 KIF13AQ9H1H9 1805 aa20.34■□□□□ 0.85
CSDE1-215ENST00000533818 ERCC6L2Q5T890 1561 aa20.34■□□□□ 0.85
CSDE1-215ENST00000533818 FGD5Q6ZNL6 1462 aa20.25■□□□□ 0.83
CSDE1-215ENST00000533818 ABCC10Q5T3U5 1492 aa20.22■□□□□ 0.83
CSDE1-215ENST00000533818 FBXO41Q8TF61 875 aa20.2■□□□□ 0.82
CSDE1-215ENST00000533818 CEP170Q5SW79 1584 aa20.2■□□□□ 0.82
CSDE1-215ENST00000533818 KDM6BO15054 1643 aa20.19■□□□□ 0.82
CSDE1-215ENST00000533818 NPM1P06748 294 aaKnown RBP eCLIP20.17■□□□□ 0.82
CSDE1-215ENST00000533818 HECW2Q9P2P5 1572 aa20.12■□□□□ 0.81
CSDE1-215ENST00000533818 GRIN2AQ12879 1464 aa20.11■□□□□ 0.81
CSDE1-215ENST00000533818 PBRM1Q86U86 1689 aa20.1■□□□□ 0.81
CSDE1-215ENST00000533818 ADGRL1O94910 1474 aa20.09■□□□□ 0.81
CSDE1-215ENST00000533818 NUP160Q12769 1436 aa20.08■□□□□ 0.8
CSDE1-215ENST00000533818 DIP2BQ9P265 1576 aa20.06■□□□□ 0.8
CSDE1-215ENST00000533818 CUX1P39880 1505 aa20.06■□□□□ 0.8
CSDE1-215ENST00000533818 SHROOM2Q13796 1616 aa20.04■□□□□ 0.8
CSDE1-215ENST00000533818 PRG4Q92954 1404 aaPredicted RBP20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 159.4 ms