Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
MMP28Q9H239 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC14.96□□□□□ -0.01
MMP28Q9H239 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
MMP28Q9H239 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
MMP28Q9H239 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC14.96□□□□□ -0.01
MMP28Q9H239 YBX1P2-201ENST00000489612 999 ntBASIC14.96□□□□□ -0.01
MMP28Q9H239 CD81-212ENST00000526072 1172 ntTSL 5 BASIC14.96□□□□□ -0.01
MMP28Q9H239 BLK-205ENST00000529894 2017 ntTSL 5 BASIC14.96□□□□□ -0.01
MMP28Q9H239 AL441883.1-201ENST00000566170 1045 ntBASIC14.96□□□□□ -0.01
MMP28Q9H239 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC14.96□□□□□ -0.01
MMP28Q9H239 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
MMP28Q9H239 AC116407.2-201ENST00000613639 860 ntBASIC14.96□□□□□ -0.01
MMP28Q9H239 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
MMP28Q9H239 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC14.96□□□□□ -0.01
MMP28Q9H239 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
MMP28Q9H239 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
MMP28Q9H239 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC14.96□□□□□ -0.01
MMP28Q9H239 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
MMP28Q9H239 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.02
MMP28Q9H239 ASL-204ENST00000395331 1538 ntTSL 5 BASIC14.96□□□□□ -0.02
MMP28Q9H239 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC14.96□□□□□ -0.02
MMP28Q9H239 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
MMP28Q9H239 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
MMP28Q9H239 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
MMP28Q9H239 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.02
MMP28Q9H239 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
MMP28Q9H239 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC14.95□□□□□ -0.02
MMP28Q9H239 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
MMP28Q9H239 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
MMP28Q9H239 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
MMP28Q9H239 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
MMP28Q9H239 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC14.95□□□□□ -0.02
MMP28Q9H239 TCAF2P1-201ENST00000291129 2421 ntBASIC14.95□□□□□ -0.02
MMP28Q9H239 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC14.95□□□□□ -0.02
MMP28Q9H239 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
MMP28Q9H239 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
MMP28Q9H239 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
MMP28Q9H239 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
MMP28Q9H239 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
MMP28Q9H239 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC14.95□□□□□ -0.02
MMP28Q9H239 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC14.95□□□□□ -0.02
MMP28Q9H239 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
MMP28Q9H239 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
MMP28Q9H239 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC14.95□□□□□ -0.02
MMP28Q9H239 AC117947.1-201ENST00000427448 529 ntBASIC14.95□□□□□ -0.02
MMP28Q9H239 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
MMP28Q9H239 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC14.95□□□□□ -0.02
MMP28Q9H239 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
MMP28Q9H239 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC14.95□□□□□ -0.02
MMP28Q9H239 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
MMP28Q9H239 AC022616.7-201ENST00000525383 220 ntBASIC14.95□□□□□ -0.02
MMP28Q9H239 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC14.95□□□□□ -0.02
MMP28Q9H239 LTBR-211ENST00000543190 785 ntTSL 3 BASIC14.95□□□□□ -0.02
MMP28Q9H239 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC14.95□□□□□ -0.02
MMP28Q9H239 LINC01238-205ENST00000567549 1107 ntBASIC14.95□□□□□ -0.02
MMP28Q9H239 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC14.95□□□□□ -0.02
MMP28Q9H239 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC14.95□□□□□ -0.02
MMP28Q9H239 AC011558.1-201ENST00000623459 338 ntBASIC14.95□□□□□ -0.02
MMP28Q9H239 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
MMP28Q9H239 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
MMP28Q9H239 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
MMP28Q9H239 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
MMP28Q9H239 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
MMP28Q9H239 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
MMP28Q9H239 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
MMP28Q9H239 ALOX12P2-203ENST00000570921 1945 ntBASIC14.95□□□□□ -0.02
MMP28Q9H239 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
MMP28Q9H239 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC14.95□□□□□ -0.02
MMP28Q9H239 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC14.95□□□□□ -0.02
MMP28Q9H239 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
MMP28Q9H239 ADM-208ENST00000534464 1640 ntTSL 2 BASIC14.95□□□□□ -0.02
MMP28Q9H239 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
MMP28Q9H239 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
MMP28Q9H239 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
MMP28Q9H239 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC14.95□□□□□ -0.02
MMP28Q9H239 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
MMP28Q9H239 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
MMP28Q9H239 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
MMP28Q9H239 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
MMP28Q9H239 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
MMP28Q9H239 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
MMP28Q9H239 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC14.94□□□□□ -0.02
MMP28Q9H239 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
MMP28Q9H239 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
MMP28Q9H239 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
MMP28Q9H239 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC14.94□□□□□ -0.02
MMP28Q9H239 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
MMP28Q9H239 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
MMP28Q9H239 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
MMP28Q9H239 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC14.94□□□□□ -0.02
MMP28Q9H239 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC14.94□□□□□ -0.02
MMP28Q9H239 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
MMP28Q9H239 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
MMP28Q9H239 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
MMP28Q9H239 GUK1-204ENST00000366721 689 ntTSL 3 BASIC14.94□□□□□ -0.02
MMP28Q9H239 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC14.94□□□□□ -0.02
MMP28Q9H239 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC14.94□□□□□ -0.02
MMP28Q9H239 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC14.94□□□□□ -0.02
MMP28Q9H239 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC14.94□□□□□ -0.02
MMP28Q9H239 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC14.94□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 67.7 ms