RNA–Protein interactions for RNA: ENST00000522353.2

PCDHA3-201, Transcript of protocadherin alpha 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA3, Length 5,260 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3-201ENST00000522353 DCAF8L2P0C7V8 631 aa28.72■■■□□ 2.19
PCDHA3-201ENST00000522353 NISCHQ9Y2I1 1504 aa27.15■■□□□ 1.94
PCDHA3-201ENST00000522353 SUPT5HO00267 1087 aaKnown RBP26.81■■□□□ 1.88
PCDHA3-201ENST00000522353 SHROOM4Q9ULL8 1493 aa26.32■■□□□ 1.8
PCDHA3-201ENST00000522353 EHMT2Q96KQ7 1210 aa25.85■■□□□ 1.73
PCDHA3-201ENST00000522353 FAM9AQ8IZU1 332 aaPredicted RBP25.82■■□□□ 1.72
PCDHA3-201ENST00000522353 APLP2Q06481 763 aa25.8■■□□□ 1.72
PCDHA3-201ENST00000522353 PELP1Q8IZL8 1130 aaKnown RBP25.28■■□□□ 1.64
PCDHA3-201ENST00000522353 TRIM41Q8WV44 630 aa24.96■■□□□ 1.59
PCDHA3-201ENST00000522353 RANGAP1P46060 587 aaPredicted RBP24.95■■□□□ 1.58
PCDHA3-201ENST00000522353 TTBK1Q5TCY1 1321 aaPredicted RBP24.93■■□□□ 1.58
PCDHA3-201ENST00000522353 ATP1B4Q9UN42 357 aaPredicted RBP24.91■■□□□ 1.58
PCDHA3-201ENST00000522353 UBTFP17480 764 aaKnown RBP24.75■■□□□ 1.55
PCDHA3-201ENST00000522353 PCGF6Q9BYE7 350 aa24.64■■□□□ 1.54
PCDHA3-201ENST00000522353 ZEB1P37275 1124 aaPredicted RBP24.45■■□□□ 1.5
PCDHA3-201ENST00000522353 CCER1Q8TC90 406 aaPredicted RBP24.43■■□□□ 1.5
PCDHA3-201ENST00000522353 CENPBP07199 599 aaPredicted RBP24.32■■□□□ 1.48
PCDHA3-201ENST00000522353 MYT1LQ9UL68 1186 aa24.21■■□□□ 1.47
PCDHA3-201ENST00000522353 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.2■■□□□ 1.46
PCDHA3-201ENST00000522353 HNRNPUL2Q1KMD3 747 aaKnown RBP24.2■■□□□ 1.46
PCDHA3-201ENST00000522353 ERICH6Q7L0X2 663 aa24.08■■□□□ 1.45
PCDHA3-201ENST00000522353 NEFLP07196 543 aa23.91■■□□□ 1.42
PCDHA3-201ENST00000522353 PPARGC1BQ86YN6 1023 aaKnown RBP23.85■■□□□ 1.41
PCDHA3-201ENST00000522353 ITGAEP38570 1179 aa23.83■■□□□ 1.41
PCDHA3-201ENST00000522353 ABCC9O60706 1549 aa23.82■■□□□ 1.4
PCDHA3-201ENST00000522353 PABPN1Q86U42 306 aaKnown RBP eCLIP23.74■■□□□ 1.39
PCDHA3-201ENST00000522353 TRIM26Q12899 539 aaPredicted RBP23.69■■□□□ 1.38
PCDHA3-201ENST00000522353 POLR3GLQ9BT43 218 aa23.65■■□□□ 1.38
PCDHA3-201ENST00000522353 YTHDC1Q96MU7 727 aaKnown RBP23.62■■□□□ 1.37
PCDHA3-201ENST00000522353 CHIC1Q5VXU3 224 aa23.55■■□□□ 1.36
PCDHA3-201ENST00000522353 LOC105371045A0A1W2PR82 267 aa23.44■■□□□ 1.34
PCDHA3-201ENST00000522353 SLC4A1APQ9BWU0 796 aaKnown RBP23.4■■□□□ 1.34
PCDHA3-201ENST00000522353 HRCP23327 699 aa23.37■■□□□ 1.33
PCDHA3-201ENST00000522353 FBLN2P98095 1184 aa23.36■■□□□ 1.33
PCDHA3-201ENST00000522353 FAM50AQ14320 339 aaKnown RBP23.32■■□□□ 1.32
PCDHA3-201ENST00000522353 CNGB1Q14028 1251 aaPredicted RBP23.26■■□□□ 1.31
PCDHA3-201ENST00000522353 TRIM52Q96A61 297 aa23.24■■□□□ 1.31
PCDHA3-201ENST00000522353 DAXXQ9UER7 740 aaPredicted RBP23.24■■□□□ 1.31
PCDHA3-201ENST00000522353 MYT1Q01538 1121 aa23.22■■□□□ 1.31
PCDHA3-201ENST00000522353 NEUROD1Q13562 356 aa22.92■■□□□ 1.26
PCDHA3-201ENST00000522353 CDK11AQ9UQ88 783 aaPredicted RBP22.91■■□□□ 1.26
PCDHA3-201ENST00000522353 ZNF326Q5BKZ1 582 aaKnown RBP22.9■■□□□ 1.26
PCDHA3-201ENST00000522353 BCANQ96GW7 911 aa22.87■■□□□ 1.25
PCDHA3-201ENST00000522353 CLSPNQ9HAW4 1339 aa22.87■■□□□ 1.25
PCDHA3-201ENST00000522353 P3H3Q8IVL6 736 aa22.83■■□□□ 1.24
PCDHA3-201ENST00000522353 CSRNP3Q8WYN3 585 aa22.82■■□□□ 1.24
PCDHA3-201ENST00000522353 ESF1Q9H501 851 aaKnown RBP22.82■■□□□ 1.24
PCDHA3-201ENST00000522353 ARID3CA6NKF2 412 aa22.8■■□□□ 1.24
PCDHA3-201ENST00000522353 NPM1P06748 294 aaKnown RBP eCLIP22.79■■□□□ 1.24
PCDHA3-201ENST00000522353 DIEXFQ68CQ4 756 aaKnown RBP22.79■■□□□ 1.24
PCDHA3-201ENST00000522353 ZNF777Q9ULD5 760 aaPredicted RBP22.75■■□□□ 1.23
PCDHA3-201ENST00000522353 SCRIBQ14160 1630 aa22.71■■□□□ 1.23
PCDHA3-201ENST00000522353 NEFMP07197 916 aa22.71■■□□□ 1.23
PCDHA3-201ENST00000522353 ZBTB47Q9UFB7 747 aaPredicted RBP22.68■■□□□ 1.22
PCDHA3-201ENST00000522353 ANP32CO43423 234 aa22.66■■□□□ 1.22
PCDHA3-201ENST00000522353 ZNF316A6NFI3 1004 aaPredicted RBP22.64■■□□□ 1.21
PCDHA3-201ENST00000522353 SLC24A1O60721 1099 aa22.61■■□□□ 1.21
PCDHA3-201ENST00000522353 STAG3Q9UJ98 1225 aa22.57■■□□□ 1.2
PCDHA3-201ENST00000522353 RTL5Q5HYW3 569 aaPredicted RBP22.57■■□□□ 1.2
PCDHA3-201ENST00000522353 CHGAP10645 457 aaKnown RBP22.46■■□□□ 1.19
PCDHA3-201ENST00000522353 CANXP27824 592 aaKnown RBP22.46■■□□□ 1.19
PCDHA3-201ENST00000522353 CHMP7Q8WUX9 453 aaPredicted RBP22.39■■□□□ 1.18
PCDHA3-201ENST00000522353 PLPPR3Q6T4P5 718 aa22.38■■□□□ 1.17
PCDHA3-201ENST00000522353 ZCCHC6Q5VYS8 1495 aaKnown RBP22.36■■□□□ 1.17
PCDHA3-201ENST00000522353 TSPY4P0CV99 314 aa22.31■■□□□ 1.16
PCDHA3-201ENST00000522353 TSPY10P0CW01 314 aa22.31■■□□□ 1.16
PCDHA3-201ENST00000522353 TONSLQ96HA7 1378 aa22.27■■□□□ 1.16
PCDHA3-201ENST00000522353 BCL11AQ9H165 835 aa22.24■■□□□ 1.15
PCDHA3-201ENST00000522353 RB1CC1Q8TDY2 1594 aa22.22■■□□□ 1.15
PCDHA3-201ENST00000522353 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.22■■□□□ 1.15
PCDHA3-201ENST00000522353 CCDC180Q9P1Z9 1646 aa22.18■■□□□ 1.14
PCDHA3-201ENST00000522353 MTUS2Q5JR59 1369 aa22.16■■□□□ 1.14
PCDHA3-201ENST00000522353 GTF3C3Q9Y5Q9 886 aa22.16■■□□□ 1.14
PCDHA3-201ENST00000522353 CHIC2Q9UKJ5 165 aa22.15■■□□□ 1.14
PCDHA3-201ENST00000522353 PLEKHD1A6NEE1 506 aa22.05■■□□□ 1.12
PCDHA3-201ENST00000522353 KCNH8Q96L42 1107 aa22.01■■□□□ 1.11
PCDHA3-201ENST00000522353 DCAF1Q9Y4B6 1507 aa21.97■■□□□ 1.11
PCDHA3-201ENST00000522353 PPP1R15AO75807 674 aaPredicted RBP21.97■■□□□ 1.11
PCDHA3-201ENST00000522353 SCAF1Q9H7N4 1312 aaKnown RBP21.95■■□□□ 1.1
PCDHA3-201ENST00000522353 KDM2AQ9Y2K7 1162 aa21.93■■□□□ 1.1
PCDHA3-201ENST00000522353 RSF1Q96T23 1441 aaPredicted RBP21.93■■□□□ 1.1
PCDHA3-201ENST00000522353 ACIN1Q9UKV3 1341 aaKnown RBP21.92■■□□□ 1.1
PCDHA3-201ENST00000522353 NACADO15069 1562 aa21.91■■□□□ 1.1
PCDHA3-201ENST00000522353 CLIP1P30622 1438 aa21.91■■□□□ 1.1
PCDHA3-201ENST00000522353 ANP32AP39687 249 aaKnown RBP21.91■■□□□ 1.1
PCDHA3-201ENST00000522353 BAZ1BQ9UIG0 1483 aaKnown RBP21.9■■□□□ 1.1
PCDHA3-201ENST00000522353 TMC1Q8TDI8 760 aa21.89■■□□□ 1.09
PCDHA3-201ENST00000522353 NPM2Q86SE8 214 aaKnown RBP21.88■■□□□ 1.09
PCDHA3-201ENST00000522353 ARID4BQ4LE39 1312 aaPredicted RBP21.87■■□□□ 1.09
PCDHA3-201ENST00000522353 EEA1Q15075 1411 aa21.87■■□□□ 1.09
PCDHA3-201ENST00000522353 WDR43Q15061 677 aaKnown RBP eCLIP21.87■■□□□ 1.09
PCDHA3-201ENST00000522353 C14orf37Q86TY3 774 aa21.87■■□□□ 1.09
PCDHA3-201ENST00000522353 ERCC6Q03468 1493 aa21.86■■□□□ 1.09
PCDHA3-201ENST00000522353 DDX10Q13206 875 aaKnown RBP21.84■■□□□ 1.09
PCDHA3-201ENST00000522353 FAM9BQ8IZU0 186 aa21.83■■□□□ 1.09
PCDHA3-201ENST00000522353 HNRNPUQ00839 825 aaKnown RBP eCLIP21.83■■□□□ 1.08
PCDHA3-201ENST00000522353 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.81■■□□□ 1.08
PCDHA3-201ENST00000522353 UPF2Q9HAU5 1272 aaKnown RBP21.8■■□□□ 1.08
PCDHA3-201ENST00000522353 A0A0G2JS52 829 aa21.79■■□□□ 1.08
PCDHA3-201ENST00000522353 RRP7BPQ9NSQ0 103 aa21.79■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms