RNA–Protein interactions for RNA: ENST00000567549.2

LINC01238-205, Transcript of long intergenic non-protein coding RNA 1238, humanhuman

BASIC

Gene LINC01238, Length 1,107 nt, Biotype antisense RNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01238-205ENST00000567549 NISCHQ9Y2I1 1504 aa46.18■■■■■ 4.98
LINC01238-205ENST00000567549 CCDC180Q9P1Z9 1646 aa41.51■■■■■ 4.24
LINC01238-205ENST00000567549 ABCC9O60706 1549 aa41.18■■■■■ 4.18
LINC01238-205ENST00000567549 RB1CC1Q8TDY2 1594 aa39.46■■■■□ 3.91
LINC01238-205ENST00000567549 NACADO15069 1562 aa39.21■■■■□ 3.87
LINC01238-205ENST00000567549 DCAF8L2P0C7V8 631 aa38.91■■■■□ 3.82
LINC01238-205ENST00000567549 MYO15BQ96JP2 1530 aa38.75■■■■□ 3.79
LINC01238-205ENST00000567549 UNC13AQ9UPW8 1703 aa38.39■■■■□ 3.74
LINC01238-205ENST00000567549 DNAJC5BQ9UF47 199 aa38.33■■■■□ 3.73
LINC01238-205ENST00000567549 PABPN1Q86U42 306 aaKnown RBP eCLIP38.3■■■■□ 3.72
LINC01238-205ENST00000567549 ZCCHC6Q5VYS8 1495 aaKnown RBP38.29■■■■□ 3.72
LINC01238-205ENST00000567549 DCAF1Q9Y4B6 1507 aa38.26■■■■□ 3.72
LINC01238-205ENST00000567549 BICRAQ9NZM4 1560 aa38.07■■■■□ 3.69
LINC01238-205ENST00000567549 SHROOM4Q9ULL8 1493 aa37.9■■■■□ 3.66
LINC01238-205ENST00000567549 SCRIBQ14160 1630 aa37.68■■■■□ 3.62
LINC01238-205ENST00000567549 CC2D2AQ9P2K1 1620 aa37.26■■■■□ 3.56
LINC01238-205ENST00000567549 EIF4G1Q04637 1599 aaKnown RBP37.24■■■■□ 3.55
LINC01238-205ENST00000567549 CECR2Q9BXF3 1484 aa37.16■■■■□ 3.54
LINC01238-205ENST00000567549 NCAPD3P42695 1498 aa36.12■■■■□ 3.37
LINC01238-205ENST00000567549 SMARCA2P51531 1590 aa36.03■■■■□ 3.36
LINC01238-205ENST00000567549 SMARCA4P51532 1647 aa36■■■■□ 3.35
LINC01238-205ENST00000567549 ATAD2BQ9ULI0 1458 aa35.98■■■■□ 3.35
LINC01238-205ENST00000567549 BAZ1AQ9NRL2 1556 aaPredicted RBP35.93■■■■□ 3.34
LINC01238-205ENST00000567549 HMGXB3Q12766 1538 aa35.92■■■■□ 3.34
LINC01238-205ENST00000567549 BAZ1BQ9UIG0 1483 aaKnown RBP35.73■■■■□ 3.31
LINC01238-205ENST00000567549 ERCC6Q03468 1493 aa35.72■■■■□ 3.31
LINC01238-205ENST00000567549 PEG3Q9GZU2 1588 aa35.69■■■■□ 3.3
LINC01238-205ENST00000567549 CUX2O14529 1486 aa35.62■■■■□ 3.29
LINC01238-205ENST00000567549 MROH2BQ7Z745 1585 aa35.49■■■■□ 3.27
LINC01238-205ENST00000567549 LAMC3Q9Y6N6 1575 aa35.37■■■■□ 3.25
LINC01238-205ENST00000567549 NESP48681 1621 aa35.35■■■■□ 3.25
LINC01238-205ENST00000567549 DNAJC5Q9H3Z4 198 aa35.33■■■■□ 3.25
LINC01238-205ENST00000567549 PDS5BQ9NTI5 1447 aa35.17■■■■□ 3.22
LINC01238-205ENST00000567549 WIZO95785 1651 aa35.08■■■■□ 3.21
LINC01238-205ENST00000567549 THOC2Q8NI27 1593 aaKnown RBP35.07■■■■□ 3.2
LINC01238-205ENST00000567549 CADPSQ9ULU8 1353 aa35.03■■■■□ 3.2
LINC01238-205ENST00000567549 KIF21AQ7Z4S6 1674 aa34.99■■■■□ 3.19
LINC01238-205ENST00000567549 RSF1Q96T23 1441 aaPredicted RBP34.84■■■■□ 3.17
LINC01238-205ENST00000567549 MRC2Q9UBG0 1479 aa34.79■■■■□ 3.16
LINC01238-205ENST00000567549 TOP2AP11388 1531 aaKnown RBP34.76■■■■□ 3.16
LINC01238-205ENST00000567549 CEP164Q9UPV0 1460 aa34.71■■■■□ 3.15
LINC01238-205ENST00000567549 WDR62O43379 1518 aa34.67■■■■□ 3.14
LINC01238-205ENST00000567549 CFTRP13569 1480 aa34.65■■■■□ 3.14
LINC01238-205ENST00000567549 FANCD2Q9BXW9 1451 aa34.63■■■■□ 3.13
LINC01238-205ENST00000567549 PRDM2Q13029 1718 aa34.41■■■■□ 3.1
LINC01238-205ENST00000567549 CCDC88BA6NC98 1476 aa34.28■■■■□ 3.08
LINC01238-205ENST00000567549 URB2Q14146 1524 aaKnown RBP34.25■■■■□ 3.07
LINC01238-205ENST00000567549 ABCC8Q09428 1581 aa34.1■■■■□ 3.05
LINC01238-205ENST00000567549 IFT140Q96RY7 1462 aa34.02■■■■□ 3.04
LINC01238-205ENST00000567549 OSCARQ8IYS5 282 aa33.99■■■■□ 3.03
LINC01238-205ENST00000567549 TOPBP1Q92547 1522 aa33.96■■■■□ 3.03
LINC01238-205ENST00000567549 DNMBPQ6XZF7 1577 aa33.9■■■■□ 3.02
LINC01238-205ENST00000567549 TRIM41Q8WV44 630 aa33.81■■■■□ 3
LINC01238-205ENST00000567549 ZNF608Q9ULD9 1512 aaPredicted RBP33.76■■■■□ 3
LINC01238-205ENST00000567549 EIF4G3O43432 1585 aaKnown RBP33.69■■■□□ 2.98
LINC01238-205ENST00000567549 TARBP1Q13395 1621 aaKnown RBP33.62■■■□□ 2.97
LINC01238-205ENST00000567549 POLA1P09884 1462 aaPredicted RBP33.61■■■□□ 2.97
LINC01238-205ENST00000567549 WDR97A6NE52 1622 aa33.52■■■□□ 2.96
LINC01238-205ENST00000567549 AQRO60306 1485 aaKnown RBP eCLIP33.51■■■□□ 2.96
LINC01238-205ENST00000567549 SOGA1O94964 1423 aa33.5■■■□□ 2.95
LINC01238-205ENST00000567549 RIMBP3CA6NJZ7 1639 aa33.43■■■□□ 2.94
LINC01238-205ENST00000567549 RIMBP3BA6NNM3 1639 aa33.43■■■□□ 2.94
LINC01238-205ENST00000567549 RIMBP3Q9UFD9 1639 aa33.43■■■□□ 2.94
LINC01238-205ENST00000567549 FGD5Q6ZNL6 1462 aa33.42■■■□□ 2.94
LINC01238-205ENST00000567549 CHD1O14646 1710 aa33.41■■■□□ 2.94
LINC01238-205ENST00000567549 RAD54L2Q9Y4B4 1467 aa33.4■■■□□ 2.94
LINC01238-205ENST00000567549 SUPT5HO00267 1087 aaKnown RBP33.4■■■□□ 2.94
LINC01238-205ENST00000567549 FBLN2P98095 1184 aa33.37■■■□□ 2.93
LINC01238-205ENST00000567549 ARHGEF11O15085 1522 aa33.36■■■□□ 2.93
LINC01238-205ENST00000567549 CUX1P39880 1505 aa33.36■■■□□ 2.93
LINC01238-205ENST00000567549 TDRD9Q8NDG6 1382 aaKnown RBP33.34■■■□□ 2.93
LINC01238-205ENST00000567549 MAGI1Q96QZ7 1491 aaPredicted RBP33.26■■■□□ 2.92
LINC01238-205ENST00000567549 GRIN2BQ13224 1484 aa33.25■■■□□ 2.91
LINC01238-205ENST00000567549 SNAPC4Q5SXM2 1469 aa33.23■■■□□ 2.91
LINC01238-205ENST00000567549 CHMP7Q8WUX9 453 aaPredicted RBP33.2■■■□□ 2.91
LINC01238-205ENST00000567549 SYNJ1O43426 1573 aa33.15■■■□□ 2.9
LINC01238-205ENST00000567549 SYNJ2O15056 1496 aa33.12■■■□□ 2.89
LINC01238-205ENST00000567549 ABCA10Q8WWZ4 1543 aa33.11■■■□□ 2.89
LINC01238-205ENST00000567549 GAPVD1Q14C86 1478 aa33.11■■■□□ 2.89
LINC01238-205ENST00000567549 CYB5RLQ6IPT4 315 aa33.09■■■□□ 2.89
LINC01238-205ENST00000567549 PBRM1Q86U86 1689 aa33.08■■■□□ 2.89
LINC01238-205ENST00000567549 WRNQ14191 1432 aaPredicted RBP eCLIP33.06■■■□□ 2.88
LINC01238-205ENST00000567549 CLASP1Q7Z460 1538 aa33.02■■■□□ 2.88
LINC01238-205ENST00000567549 ABCA5Q8WWZ7 1642 aa33.01■■■□□ 2.87
LINC01238-205ENST00000567549 ARAP1Q96P48 1450 aa32.99■■■□□ 2.87
LINC01238-205ENST00000567549 TOP2BQ02880 1626 aa32.96■■■□□ 2.87
LINC01238-205ENST00000567549 BIVM-ERCC5R4GMW8 1640 aa32.96■■■□□ 2.87
LINC01238-205ENST00000567549 TRHP20396 242 aaPredicted RBP32.77■■■□□ 2.84
LINC01238-205ENST00000567549 GRIN2AQ12879 1464 aa32.77■■■□□ 2.84
LINC01238-205ENST00000567549 ADAMTS12P58397 1594 aa32.76■■■□□ 2.84
LINC01238-205ENST00000567549 ERICH3Q5RHP9 1530 aa32.74■■■□□ 2.83
LINC01238-205ENST00000567549 FHAD1B1AJZ9 1412 aa32.73■■■□□ 2.83
LINC01238-205ENST00000567549 NUP160Q12769 1436 aa32.64■■■□□ 2.82
LINC01238-205ENST00000567549 CEP170Q5SW79 1584 aa32.58■■■□□ 2.81
LINC01238-205ENST00000567549 SHROOM2Q13796 1616 aa32.49■■■□□ 2.79
LINC01238-205ENST00000567549 KIF27Q86VH2 1401 aa32.39■■■□□ 2.78
LINC01238-205ENST00000567549 ERCC6L2Q5T890 1561 aa32.36■■■□□ 2.77
LINC01238-205ENST00000567549 CUL7Q14999 1698 aa32.33■■■□□ 2.77
LINC01238-205ENST00000567549 PRG4Q92954 1404 aaPredicted RBP32.33■■■□□ 2.77
LINC01238-205ENST00000567549 JPH4Q96JJ6 628 aa32.32■■■□□ 2.76
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms