RNA–Protein interactions for RNA: ENST00000535997.6

CHMP1A-202, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2 BASIC

Gene CHMP1A, Length 2,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-202ENST00000535997 NISCHQ9Y2I1 1504 aa33.39■■■□□ 2.94
CHMP1A-202ENST00000535997 CCDC180Q9P1Z9 1646 aa28.45■■■□□ 2.15
CHMP1A-202ENST00000535997 ZCCHC6Q5VYS8 1495 aaKnown RBP28.23■■■□□ 2.11
CHMP1A-202ENST00000535997 SHROOM4Q9ULL8 1493 aa28.21■■■□□ 2.11
CHMP1A-202ENST00000535997 SUPT5HO00267 1087 aaKnown RBP27.73■■■□□ 2.03
CHMP1A-202ENST00000535997 DCAF8L2P0C7V8 631 aa27.55■■■□□ 2
CHMP1A-202ENST00000535997 DCAF1Q9Y4B6 1507 aa27.52■■■□□ 2
CHMP1A-202ENST00000535997 CHIC1Q5VXU3 224 aa27.05■■□□□ 1.92
CHMP1A-202ENST00000535997 MYO15BQ96JP2 1530 aa26.79■■□□□ 1.88
CHMP1A-202ENST00000535997 ABCC9O60706 1549 aa26.59■■□□□ 1.85
CHMP1A-202ENST00000535997 SCRIBQ14160 1630 aa26.49■■□□□ 1.83
CHMP1A-202ENST00000535997 RSF1Q96T23 1441 aaPredicted RBP26.39■■□□□ 1.82
CHMP1A-202ENST00000535997 NACADO15069 1562 aa26.34■■□□□ 1.81
CHMP1A-202ENST00000535997 LOC105371045A0A1W2PR82 267 aa26.16■■□□□ 1.78
CHMP1A-202ENST00000535997 HRCP23327 699 aa26.16■■□□□ 1.78
CHMP1A-202ENST00000535997 RB1CC1Q8TDY2 1594 aa26.12■■□□□ 1.77
CHMP1A-202ENST00000535997 PCGF6Q9BYE7 350 aa26.11■■□□□ 1.77
CHMP1A-202ENST00000535997 CECR2Q9BXF3 1484 aa25.96■■□□□ 1.75
CHMP1A-202ENST00000535997 TRIM41Q8WV44 630 aa25.95■■□□□ 1.74
CHMP1A-202ENST00000535997 MROH2BQ7Z745 1585 aa25.89■■□□□ 1.73
CHMP1A-202ENST00000535997 TRIM26Q12899 539 aaPredicted RBP25.75■■□□□ 1.71
CHMP1A-202ENST00000535997 WIZO95785 1651 aa25.72■■□□□ 1.71
CHMP1A-202ENST00000535997 BAZ1AQ9NRL2 1556 aaPredicted RBP25.67■■□□□ 1.7
CHMP1A-202ENST00000535997 FAM9AQ8IZU1 332 aaPredicted RBP25.57■■□□□ 1.68
CHMP1A-202ENST00000535997 PPARGC1BQ86YN6 1023 aaKnown RBP25.44■■□□□ 1.66
CHMP1A-202ENST00000535997 SMARCA4P51532 1647 aa25.41■■□□□ 1.66
CHMP1A-202ENST00000535997 TOP2AP11388 1531 aaKnown RBP25.4■■□□□ 1.66
CHMP1A-202ENST00000535997 UNC13AQ9UPW8 1703 aa25.4■■□□□ 1.66
CHMP1A-202ENST00000535997 EIF4G1Q04637 1599 aaKnown RBP25.39■■□□□ 1.66
CHMP1A-202ENST00000535997 CCDC88BA6NC98 1476 aa25.28■■□□□ 1.64
CHMP1A-202ENST00000535997 ZEB1P37275 1124 aaPredicted RBP25.25■■□□□ 1.63
CHMP1A-202ENST00000535997 EHMT2Q96KQ7 1210 aa25.23■■□□□ 1.63
CHMP1A-202ENST00000535997 SMARCA2P51531 1590 aa25.23■■□□□ 1.63
CHMP1A-202ENST00000535997 BICRAQ9NZM4 1560 aa25.11■■□□□ 1.61
CHMP1A-202ENST00000535997 ABCC8Q09428 1581 aa25.09■■□□□ 1.61
CHMP1A-202ENST00000535997 PABPN1Q86U42 306 aaKnown RBP eCLIP25.05■■□□□ 1.6
CHMP1A-202ENST00000535997 PEG3Q9GZU2 1588 aa25.02■■□□□ 1.6
CHMP1A-202ENST00000535997 EEA1Q15075 1411 aa24.95■■□□□ 1.58
CHMP1A-202ENST00000535997 SOGA1O94964 1423 aa24.9■■□□□ 1.58
CHMP1A-202ENST00000535997 WRNQ14191 1432 aaPredicted RBP eCLIP24.87■■□□□ 1.57
CHMP1A-202ENST00000535997 CSRNP3Q8WYN3 585 aa24.87■■□□□ 1.57
CHMP1A-202ENST00000535997 TNIKQ9UKE5 1360 aa24.86■■□□□ 1.57
CHMP1A-202ENST00000535997 CEP162Q5TB80 1403 aa24.81■■□□□ 1.56
CHMP1A-202ENST00000535997 ATAD2BQ9ULI0 1458 aa24.78■■□□□ 1.56
CHMP1A-202ENST00000535997 RUSC2Q8N2Y8 1516 aa24.74■■□□□ 1.55
CHMP1A-202ENST00000535997 BAZ1BQ9UIG0 1483 aaKnown RBP24.7■■□□□ 1.54
CHMP1A-202ENST00000535997 UBTFP17480 764 aaKnown RBP24.69■■□□□ 1.54
CHMP1A-202ENST00000535997 GOLGA3Q08378 1498 aa24.67■■□□□ 1.54
CHMP1A-202ENST00000535997 SYNJ1O43426 1573 aa24.61■■□□□ 1.53
CHMP1A-202ENST00000535997 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.59■■□□□ 1.53
CHMP1A-202ENST00000535997 CCER1Q8TC90 406 aaPredicted RBP24.59■■□□□ 1.53
CHMP1A-202ENST00000535997 CEP164Q9UPV0 1460 aa24.56■■□□□ 1.52
CHMP1A-202ENST00000535997 KIF21BO75037 1637 aa24.52■■□□□ 1.52
CHMP1A-202ENST00000535997 TTBK1Q5TCY1 1321 aaPredicted RBP24.43■■□□□ 1.5
CHMP1A-202ENST00000535997 TOP2BQ02880 1626 aa24.39■■□□□ 1.5
CHMP1A-202ENST00000535997 CLIP1P30622 1438 aa24.38■■□□□ 1.49
CHMP1A-202ENST00000535997 NCAPD3P42695 1498 aa24.37■■□□□ 1.49
CHMP1A-202ENST00000535997 HMGXB3Q12766 1538 aa24.34■■□□□ 1.49
CHMP1A-202ENST00000535997 RAPGEF2Q9Y4G8 1499 aa24.31■■□□□ 1.48
CHMP1A-202ENST00000535997 BIVM-ERCC5R4GMW8 1640 aa24.3■■□□□ 1.48
CHMP1A-202ENST00000535997 VPS8Q8N3P4 1428 aa24.29■■□□□ 1.48
CHMP1A-202ENST00000535997 APLP2Q06481 763 aa24.21■■□□□ 1.47
CHMP1A-202ENST00000535997 ERICH3Q5RHP9 1530 aa24.17■■□□□ 1.46
CHMP1A-202ENST00000535997 PRXQ9BXM0 1461 aa24.16■■□□□ 1.46
CHMP1A-202ENST00000535997 CFTRP13569 1480 aa24.14■■□□□ 1.45
CHMP1A-202ENST00000535997 CUX1P39880 1505 aa24.11■■□□□ 1.45
CHMP1A-202ENST00000535997 DIEXFQ68CQ4 756 aaKnown RBP24.09■■□□□ 1.45
CHMP1A-202ENST00000535997 KIF27Q86VH2 1401 aa24.07■■□□□ 1.44
CHMP1A-202ENST00000535997 HNRNPUL2Q1KMD3 747 aaKnown RBP24.05■■□□□ 1.44
CHMP1A-202ENST00000535997 RANGAP1P46060 587 aaPredicted RBP24.04■■□□□ 1.44
CHMP1A-202ENST00000535997 SCAF1Q9H7N4 1312 aaKnown RBP23.98■■□□□ 1.43
CHMP1A-202ENST00000535997 ZNF316A6NFI3 1004 aaPredicted RBP23.97■■□□□ 1.43
CHMP1A-202ENST00000535997 ARAP1Q96P48 1450 aa23.95■■□□□ 1.42
CHMP1A-202ENST00000535997 PRDM2Q13029 1718 aa23.92■■□□□ 1.42
CHMP1A-202ENST00000535997 CADPSQ9ULU8 1353 aa23.88■■□□□ 1.41
CHMP1A-202ENST00000535997 ACIN1Q9UKV3 1341 aaKnown RBP23.87■■□□□ 1.41
CHMP1A-202ENST00000535997 KANK4Q5T7N3 995 aaPredicted RBP23.81■■□□□ 1.4
CHMP1A-202ENST00000535997 IGF1RP08069 1367 aa23.81■■□□□ 1.4
CHMP1A-202ENST00000535997 CLSPNQ9HAW4 1339 aa23.8■■□□□ 1.4
CHMP1A-202ENST00000535997 CENPBP07199 599 aaPredicted RBP23.8■■□□□ 1.4
CHMP1A-202ENST00000535997 ARHGAP35Q9NRY4 1499 aa23.78■■□□□ 1.4
CHMP1A-202ENST00000535997 NEUROD1Q13562 356 aa23.77■■□□□ 1.4
CHMP1A-202ENST00000535997 CUX2O14529 1486 aa23.77■■□□□ 1.4
CHMP1A-202ENST00000535997 RRBP1Q9P2E9 1410 aaKnown RBP23.74■■□□□ 1.39
CHMP1A-202ENST00000535997 CARMIL1Q5VZK9 1371 aa23.69■■□□□ 1.38
CHMP1A-202ENST00000535997 FGD5Q6ZNL6 1462 aa23.69■■□□□ 1.38
CHMP1A-202ENST00000535997 DHX57Q6P158 1386 aaKnown RBP23.67■■□□□ 1.38
CHMP1A-202ENST00000535997 CC2D2AQ9P2K1 1620 aa23.66■■□□□ 1.38
CHMP1A-202ENST00000535997 CCNB3Q8WWL7 1395 aa23.62■■□□□ 1.37
CHMP1A-202ENST00000535997 MAP3K1Q13233 1512 aa23.62■■□□□ 1.37
CHMP1A-202ENST00000535997 PELP1Q8IZL8 1130 aaKnown RBP23.62■■□□□ 1.37
CHMP1A-202ENST00000535997 FANCD2Q9BXW9 1451 aa23.59■■□□□ 1.37
CHMP1A-202ENST00000535997 MIER1Q8N108 512 aa23.54■■□□□ 1.36
CHMP1A-202ENST00000535997 GTF3C3Q9Y5Q9 886 aa23.53■■□□□ 1.36
CHMP1A-202ENST00000535997 TIAM1Q13009 1591 aa23.52■■□□□ 1.36
CHMP1A-202ENST00000535997 FHAD1B1AJZ9 1412 aa23.5■■□□□ 1.35
CHMP1A-202ENST00000535997 DNMBPQ6XZF7 1577 aa23.5■■□□□ 1.35
CHMP1A-202ENST00000535997 ABCA10Q8WWZ4 1543 aa23.48■■□□□ 1.35
CHMP1A-202ENST00000535997 LRRC9Q6ZRR7 1453 aa23.45■■□□□ 1.34
CHMP1A-202ENST00000535997 TOPBP1Q92547 1522 aa23.44■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms