RNA–Protein interactions for RNA: ENST00000257765.9

KHDC1-201, Transcript of KH domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene KHDC1, Length 1,134 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KHDC1-201ENST00000257765 NISCHQ9Y2I1 1504 aa46.6■■■■■ 5.05
KHDC1-201ENST00000257765 ABCC9O60706 1549 aa41.97■■■■■ 4.31
KHDC1-201ENST00000257765 CCDC180Q9P1Z9 1646 aa41.97■■■■■ 4.31
KHDC1-201ENST00000257765 RB1CC1Q8TDY2 1594 aa39.96■■■■□ 3.99
KHDC1-201ENST00000257765 NACADO15069 1562 aa39.64■■■■□ 3.94
KHDC1-201ENST00000257765 DNAJC5BQ9UF47 199 aa39.37■■■■□ 3.89
KHDC1-201ENST00000257765 DCAF8L2P0C7V8 631 aa39.28■■■■□ 3.88
KHDC1-201ENST00000257765 UNC13AQ9UPW8 1703 aa39.11■■■■□ 3.85
KHDC1-201ENST00000257765 MYO15BQ96JP2 1530 aa39.06■■■■□ 3.84
KHDC1-201ENST00000257765 PABPN1Q86U42 306 aaKnown RBP eCLIP38.98■■■■□ 3.83
KHDC1-201ENST00000257765 BICRAQ9NZM4 1560 aa38.78■■■■□ 3.8
KHDC1-201ENST00000257765 ZCCHC6Q5VYS8 1495 aaKnown RBP38.63■■■■□ 3.77
KHDC1-201ENST00000257765 DCAF1Q9Y4B6 1507 aa38.52■■■■□ 3.76
KHDC1-201ENST00000257765 SHROOM4Q9ULL8 1493 aa38.28■■■■□ 3.72
KHDC1-201ENST00000257765 SCRIBQ14160 1630 aa38.19■■■■□ 3.7
KHDC1-201ENST00000257765 CC2D2AQ9P2K1 1620 aa37.94■■■■□ 3.66
KHDC1-201ENST00000257765 EIF4G1Q04637 1599 aaKnown RBP37.85■■■■□ 3.65
KHDC1-201ENST00000257765 CECR2Q9BXF3 1484 aa37.83■■■■□ 3.65
KHDC1-201ENST00000257765 NCAPD3P42695 1498 aa36.56■■■■□ 3.44
KHDC1-201ENST00000257765 ATAD2BQ9ULI0 1458 aa36.43■■■■□ 3.42
KHDC1-201ENST00000257765 SMARCA4P51532 1647 aa36.42■■■■□ 3.42
KHDC1-201ENST00000257765 SMARCA2P51531 1590 aa36.37■■■■□ 3.41
KHDC1-201ENST00000257765 HMGXB3Q12766 1538 aa36.34■■■■□ 3.41
KHDC1-201ENST00000257765 ERCC6Q03468 1493 aa36.27■■■■□ 3.4
KHDC1-201ENST00000257765 DNAJC5Q9H3Z4 198 aa36.26■■■■□ 3.4
KHDC1-201ENST00000257765 CUX2O14529 1486 aa36.25■■■■□ 3.39
KHDC1-201ENST00000257765 BAZ1AQ9NRL2 1556 aaPredicted RBP36.22■■■■□ 3.39
KHDC1-201ENST00000257765 BAZ1BQ9UIG0 1483 aaKnown RBP36.11■■■■□ 3.37
KHDC1-201ENST00000257765 PEG3Q9GZU2 1588 aa36.07■■■■□ 3.37
KHDC1-201ENST00000257765 NESP48681 1621 aa36.01■■■■□ 3.36
KHDC1-201ENST00000257765 MROH2BQ7Z745 1585 aa35.9■■■■□ 3.34
KHDC1-201ENST00000257765 LAMC3Q9Y6N6 1575 aa35.81■■■■□ 3.32
KHDC1-201ENST00000257765 THOC2Q8NI27 1593 aaKnown RBP35.76■■■■□ 3.31
KHDC1-201ENST00000257765 KIF21AQ7Z4S6 1674 aa35.64■■■■□ 3.3
KHDC1-201ENST00000257765 PDS5BQ9NTI5 1447 aa35.55■■■■□ 3.28
KHDC1-201ENST00000257765 WIZO95785 1651 aa35.49■■■■□ 3.27
KHDC1-201ENST00000257765 CADPSQ9ULU8 1353 aa35.42■■■■□ 3.26
KHDC1-201ENST00000257765 MRC2Q9UBG0 1479 aa35.29■■■■□ 3.24
KHDC1-201ENST00000257765 WDR62O43379 1518 aa35.22■■■■□ 3.23
KHDC1-201ENST00000257765 CEP164Q9UPV0 1460 aa35.13■■■■□ 3.21
KHDC1-201ENST00000257765 RSF1Q96T23 1441 aaPredicted RBP35.09■■■■□ 3.21
KHDC1-201ENST00000257765 TOP2AP11388 1531 aaKnown RBP35.06■■■■□ 3.2
KHDC1-201ENST00000257765 FANCD2Q9BXW9 1451 aa35.05■■■■□ 3.2
KHDC1-201ENST00000257765 CFTRP13569 1480 aa35.02■■■■□ 3.2
KHDC1-201ENST00000257765 PRDM2Q13029 1718 aa34.81■■■■□ 3.16
KHDC1-201ENST00000257765 URB2Q14146 1524 aaKnown RBP34.77■■■■□ 3.16
KHDC1-201ENST00000257765 TRIM41Q8WV44 630 aa34.64■■■■□ 3.14
KHDC1-201ENST00000257765 CCDC88BA6NC98 1476 aa34.6■■■■□ 3.13
KHDC1-201ENST00000257765 OSCARQ8IYS5 282 aa34.49■■■■□ 3.11
KHDC1-201ENST00000257765 IFT140Q96RY7 1462 aa34.41■■■■□ 3.1
KHDC1-201ENST00000257765 TOPBP1Q92547 1522 aa34.39■■■■□ 3.1
KHDC1-201ENST00000257765 ZNF608Q9ULD9 1512 aaPredicted RBP34.35■■■■□ 3.09
KHDC1-201ENST00000257765 ABCC8Q09428 1581 aa34.31■■■■□ 3.08
KHDC1-201ENST00000257765 DNMBPQ6XZF7 1577 aa34.28■■■■□ 3.08
KHDC1-201ENST00000257765 EIF4G3O43432 1585 aaKnown RBP34.23■■■■□ 3.07
KHDC1-201ENST00000257765 RIMBP3CA6NJZ7 1639 aa34.16■■■■□ 3.06
KHDC1-201ENST00000257765 RIMBP3BA6NNM3 1639 aa34.16■■■■□ 3.06
KHDC1-201ENST00000257765 RIMBP3Q9UFD9 1639 aa34.16■■■■□ 3.06
KHDC1-201ENST00000257765 TARBP1Q13395 1621 aaKnown RBP34.11■■■■□ 3.05
KHDC1-201ENST00000257765 POLA1P09884 1462 aaPredicted RBP34.02■■■■□ 3.04
KHDC1-201ENST00000257765 ARHGEF11O15085 1522 aa34.02■■■■□ 3.04
KHDC1-201ENST00000257765 CHD1O14646 1710 aa34.01■■■■□ 3.04
KHDC1-201ENST00000257765 AQRO60306 1485 aaKnown RBP eCLIP34■■■■□ 3.03
KHDC1-201ENST00000257765 RAD54L2Q9Y4B4 1467 aa33.88■■■■□ 3.01
KHDC1-201ENST00000257765 SOGA1O94964 1423 aa33.83■■■■□ 3.01
KHDC1-201ENST00000257765 FGD5Q6ZNL6 1462 aa33.81■■■■□ 3
KHDC1-201ENST00000257765 WDR97A6NE52 1622 aa33.8■■■■□ 3
KHDC1-201ENST00000257765 FBLN2P98095 1184 aa33.77■■■■□ 3
KHDC1-201ENST00000257765 TDRD9Q8NDG6 1382 aaKnown RBP33.76■■■■□ 3
KHDC1-201ENST00000257765 CUX1P39880 1505 aa33.75■■■□□ 2.99
KHDC1-201ENST00000257765 SNAPC4Q5SXM2 1469 aa33.7■■■□□ 2.99
KHDC1-201ENST00000257765 CYB5RLQ6IPT4 315 aa33.69■■■□□ 2.98
KHDC1-201ENST00000257765 ARAP1Q96P48 1450 aa33.67■■■□□ 2.98
KHDC1-201ENST00000257765 MAGI1Q96QZ7 1491 aaPredicted RBP33.62■■■□□ 2.97
KHDC1-201ENST00000257765 GRIN2BQ13224 1484 aa33.58■■■□□ 2.97
KHDC1-201ENST00000257765 CLASP1Q7Z460 1538 aa33.58■■■□□ 2.97
KHDC1-201ENST00000257765 SYNJ1O43426 1573 aa33.56■■■□□ 2.96
KHDC1-201ENST00000257765 PBRM1Q86U86 1689 aa33.54■■■□□ 2.96
KHDC1-201ENST00000257765 CHMP7Q8WUX9 453 aaPredicted RBP33.52■■■□□ 2.96
KHDC1-201ENST00000257765 SYNJ2O15056 1496 aa33.5■■■□□ 2.95
KHDC1-201ENST00000257765 GAPVD1Q14C86 1478 aa33.44■■■□□ 2.94
KHDC1-201ENST00000257765 ABCA5Q8WWZ7 1642 aa33.42■■■□□ 2.94
KHDC1-201ENST00000257765 ABCA10Q8WWZ4 1543 aa33.41■■■□□ 2.94
KHDC1-201ENST00000257765 SUPT5HO00267 1087 aaKnown RBP33.4■■■□□ 2.94
KHDC1-201ENST00000257765 TRHP20396 242 aaPredicted RBP33.37■■■□□ 2.93
KHDC1-201ENST00000257765 BIVM-ERCC5R4GMW8 1640 aa33.24■■■□□ 2.91
KHDC1-201ENST00000257765 WRNQ14191 1432 aaPredicted RBP eCLIP33.23■■■□□ 2.91
KHDC1-201ENST00000257765 TOP2BQ02880 1626 aa33.2■■■□□ 2.91
KHDC1-201ENST00000257765 ADAMTS12P58397 1594 aa33.17■■■□□ 2.9
KHDC1-201ENST00000257765 GRIN2AQ12879 1464 aa33.17■■■□□ 2.9
KHDC1-201ENST00000257765 CEP170Q5SW79 1584 aa33.07■■■□□ 2.88
KHDC1-201ENST00000257765 NUP160Q12769 1436 aa33.05■■■□□ 2.88
KHDC1-201ENST00000257765 ERCC6L2Q5T890 1561 aa33.02■■■□□ 2.88
KHDC1-201ENST00000257765 FHAD1B1AJZ9 1412 aa33.02■■■□□ 2.88
KHDC1-201ENST00000257765 ERICH3Q5RHP9 1530 aa33.01■■■□□ 2.87
KHDC1-201ENST00000257765 SHROOM2Q13796 1616 aa32.96■■■□□ 2.87
KHDC1-201ENST00000257765 RUSC2Q8N2Y8 1516 aa32.72■■■□□ 2.83
KHDC1-201ENST00000257765 PRG4Q92954 1404 aaPredicted RBP32.71■■■□□ 2.83
KHDC1-201ENST00000257765 JPH4Q96JJ6 628 aa32.64■■■□□ 2.82
KHDC1-201ENST00000257765 KIF13AQ9H1H9 1805 aa32.59■■■□□ 2.81
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms