RNA–Protein interactions for RNA: ENST00000355155.5

VPS13B-201, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 1 (best) BASIC

Gene VPS13B, Length 2,822 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-201ENST00000355155 NISCHQ9Y2I1 1504 aa39.17■■■■□ 3.86
VPS13B-201ENST00000355155 CCDC180Q9P1Z9 1646 aa34.3■■■■□ 3.08
VPS13B-201ENST00000355155 ZCCHC6Q5VYS8 1495 aaKnown RBP33.01■■■□□ 2.87
VPS13B-201ENST00000355155 DCAF1Q9Y4B6 1507 aa32.65■■■□□ 2.82
VPS13B-201ENST00000355155 MYO15BQ96JP2 1530 aa32.24■■■□□ 2.75
VPS13B-201ENST00000355155 NACADO15069 1562 aa31.79■■■□□ 2.68
VPS13B-201ENST00000355155 ABCC9O60706 1549 aa31.74■■■□□ 2.67
VPS13B-201ENST00000355155 DCAF8L2P0C7V8 631 aa31.56■■■□□ 2.64
VPS13B-201ENST00000355155 SHROOM4Q9ULL8 1493 aa31.5■■■□□ 2.63
VPS13B-201ENST00000355155 RB1CC1Q8TDY2 1594 aa31.4■■■□□ 2.62
VPS13B-201ENST00000355155 SCRIBQ14160 1630 aa31.17■■■□□ 2.58
VPS13B-201ENST00000355155 UNC13AQ9UPW8 1703 aa30.84■■■□□ 2.53
VPS13B-201ENST00000355155 BICRAQ9NZM4 1560 aa30.49■■■□□ 2.47
VPS13B-201ENST00000355155 RSF1Q96T23 1441 aaPredicted RBP30.37■■■□□ 2.45
VPS13B-201ENST00000355155 SUPT5HO00267 1087 aaKnown RBP30.36■■■□□ 2.45
VPS13B-201ENST00000355155 CECR2Q9BXF3 1484 aa30.25■■■□□ 2.43
VPS13B-201ENST00000355155 BAZ1AQ9NRL2 1556 aaPredicted RBP30.24■■■□□ 2.43
VPS13B-201ENST00000355155 MROH2BQ7Z745 1585 aa30.17■■■□□ 2.42
VPS13B-201ENST00000355155 SMARCA4P51532 1647 aa30.09■■■□□ 2.41
VPS13B-201ENST00000355155 WIZO95785 1651 aa29.93■■■□□ 2.38
VPS13B-201ENST00000355155 PEG3Q9GZU2 1588 aa29.91■■■□□ 2.38
VPS13B-201ENST00000355155 PABPN1Q86U42 306 aaKnown RBP eCLIP29.81■■■□□ 2.36
VPS13B-201ENST00000355155 TOP2AP11388 1531 aaKnown RBP29.76■■■□□ 2.35
VPS13B-201ENST00000355155 SMARCA2P51531 1590 aa29.55■■■□□ 2.32
VPS13B-201ENST00000355155 ATAD2BQ9ULI0 1458 aa29.49■■■□□ 2.31
VPS13B-201ENST00000355155 EIF4G1Q04637 1599 aaKnown RBP29.47■■■□□ 2.31
VPS13B-201ENST00000355155 CHIC1Q5VXU3 224 aa29.45■■■□□ 2.3
VPS13B-201ENST00000355155 HMGXB3Q12766 1538 aa29.34■■■□□ 2.29
VPS13B-201ENST00000355155 CCDC88BA6NC98 1476 aa29.33■■■□□ 2.29
VPS13B-201ENST00000355155 NCAPD3P42695 1498 aa29.29■■■□□ 2.28
VPS13B-201ENST00000355155 BAZ1BQ9UIG0 1483 aaKnown RBP29.25■■■□□ 2.27
VPS13B-201ENST00000355155 CC2D2AQ9P2K1 1620 aa28.95■■■□□ 2.22
VPS13B-201ENST00000355155 PRDM2Q13029 1718 aa28.73■■■□□ 2.19
VPS13B-201ENST00000355155 TRIM41Q8WV44 630 aa28.7■■■□□ 2.18
VPS13B-201ENST00000355155 CFTRP13569 1480 aa28.66■■■□□ 2.18
VPS13B-201ENST00000355155 ABCC8Q09428 1581 aa28.65■■■□□ 2.18
VPS13B-201ENST00000355155 WRNQ14191 1432 aaPredicted RBP eCLIP28.52■■■□□ 2.16
VPS13B-201ENST00000355155 BIVM-ERCC5R4GMW8 1640 aa28.49■■■□□ 2.15
VPS13B-201ENST00000355155 SYNJ1O43426 1573 aa28.47■■■□□ 2.15
VPS13B-201ENST00000355155 TOP2BQ02880 1626 aa28.45■■■□□ 2.14
VPS13B-201ENST00000355155 CADPSQ9ULU8 1353 aa28.42■■■□□ 2.14
VPS13B-201ENST00000355155 EEA1Q15075 1411 aa28.38■■■□□ 2.13
VPS13B-201ENST00000355155 LAMC3Q9Y6N6 1575 aa28.29■■■□□ 2.12
VPS13B-201ENST00000355155 CUX1P39880 1505 aa28.23■■■□□ 2.11
VPS13B-201ENST00000355155 SOGA1O94964 1423 aa28.13■■■□□ 2.09
VPS13B-201ENST00000355155 LOC105371045A0A1W2PR82 267 aa28.1■■■□□ 2.09
VPS13B-201ENST00000355155 FANCD2Q9BXW9 1451 aa28.08■■■□□ 2.09
VPS13B-201ENST00000355155 KIF21BO75037 1637 aa28.04■■■□□ 2.08
VPS13B-201ENST00000355155 RUSC2Q8N2Y8 1516 aa28.02■■■□□ 2.08
VPS13B-201ENST00000355155 DNMBPQ6XZF7 1577 aa28■■■□□ 2.07
VPS13B-201ENST00000355155 NESP48681 1621 aa27.98■■■□□ 2.07
VPS13B-201ENST00000355155 CSRNP3Q8WYN3 585 aa27.93■■■□□ 2.06
VPS13B-201ENST00000355155 FAM9AQ8IZU1 332 aaPredicted RBP27.92■■■□□ 2.06
VPS13B-201ENST00000355155 PDS5BQ9NTI5 1447 aa27.9■■■□□ 2.06
VPS13B-201ENST00000355155 CEP164Q9UPV0 1460 aa27.9■■■□□ 2.06
VPS13B-201ENST00000355155 GOLGA3Q08378 1498 aa27.86■■■□□ 2.05
VPS13B-201ENST00000355155 TOPBP1Q92547 1522 aa27.85■■■□□ 2.05
VPS13B-201ENST00000355155 TNIKQ9UKE5 1360 aa27.83■■■□□ 2.05
VPS13B-201ENST00000355155 DNAJC5BQ9UF47 199 aa27.83■■■□□ 2.05
VPS13B-201ENST00000355155 FGD5Q6ZNL6 1462 aa27.83■■■□□ 2.05
VPS13B-201ENST00000355155 KIF21AQ7Z4S6 1674 aa27.82■■■□□ 2.04
VPS13B-201ENST00000355155 ERICH3Q5RHP9 1530 aa27.82■■■□□ 2.04
VPS13B-201ENST00000355155 KIF27Q86VH2 1401 aa27.79■■■□□ 2.04
VPS13B-201ENST00000355155 PRXQ9BXM0 1461 aa27.78■■■□□ 2.04
VPS13B-201ENST00000355155 URB2Q14146 1524 aaKnown RBP27.77■■■□□ 2.04
VPS13B-201ENST00000355155 WDR97A6NE52 1622 aa27.76■■■□□ 2.03
VPS13B-201ENST00000355155 ABCA10Q8WWZ4 1543 aa27.73■■■□□ 2.03
VPS13B-201ENST00000355155 POLA1P09884 1462 aaPredicted RBP27.7■■■□□ 2.03
VPS13B-201ENST00000355155 CUX2O14529 1486 aa27.61■■■□□ 2.01
VPS13B-201ENST00000355155 RAPGEF2Q9Y4G8 1499 aa27.6■■■□□ 2.01
VPS13B-201ENST00000355155 MRC2Q9UBG0 1479 aa27.59■■■□□ 2.01
VPS13B-201ENST00000355155 CEP162Q5TB80 1403 aa27.59■■■□□ 2.01
VPS13B-201ENST00000355155 WDR62O43379 1518 aa27.55■■■□□ 2
VPS13B-201ENST00000355155 ABCA5Q8WWZ7 1642 aa27.54■■■□□ 2
VPS13B-201ENST00000355155 TARBP1Q13395 1621 aaKnown RBP27.54■■■□□ 2
VPS13B-201ENST00000355155 IGF1RP08069 1367 aa27.53■■■□□ 2
VPS13B-201ENST00000355155 CUL7Q14999 1698 aa27.5■■□□□ 1.99
VPS13B-201ENST00000355155 RAD54L2Q9Y4B4 1467 aa27.49■■□□□ 1.99
VPS13B-201ENST00000355155 THOC2Q8NI27 1593 aaKnown RBP27.42■■□□□ 1.98
VPS13B-201ENST00000355155 UBTFP17480 764 aaKnown RBP27.36■■□□□ 1.97
VPS13B-201ENST00000355155 CARMIL1Q5VZK9 1371 aa27.35■■□□□ 1.97
VPS13B-201ENST00000355155 CLIP1P30622 1438 aa27.32■■□□□ 1.96
VPS13B-201ENST00000355155 IFT140Q96RY7 1462 aa27.3■■□□□ 1.96
VPS13B-201ENST00000355155 EHMT2Q96KQ7 1210 aa27.3■■□□□ 1.96
VPS13B-201ENST00000355155 GAPVD1Q14C86 1478 aa27.29■■□□□ 1.96
VPS13B-201ENST00000355155 PBRM1Q86U86 1689 aa27.27■■□□□ 1.96
VPS13B-201ENST00000355155 VPS8Q8N3P4 1428 aa27.21■■□□□ 1.95
VPS13B-201ENST00000355155 CTTNBP2Q8WZ74 1663 aa27.2■■□□□ 1.94
VPS13B-201ENST00000355155 ERCC6Q03468 1493 aa27.19■■□□□ 1.94
VPS13B-201ENST00000355155 ARAP1Q96P48 1450 aa27.16■■□□□ 1.94
VPS13B-201ENST00000355155 TRIM26Q12899 539 aaPredicted RBP27.16■■□□□ 1.94
VPS13B-201ENST00000355155 ADAMTS12P58397 1594 aa27.12■■□□□ 1.93
VPS13B-201ENST00000355155 TDRD9Q8NDG6 1382 aaKnown RBP27.11■■□□□ 1.93
VPS13B-201ENST00000355155 ARHGAP35Q9NRY4 1499 aa27.1■■□□□ 1.93
VPS13B-201ENST00000355155 GRIN2BQ13224 1484 aa27.09■■□□□ 1.93
VPS13B-201ENST00000355155 EFCAB5A4FU69 1503 aa27.06■■□□□ 1.92
VPS13B-201ENST00000355155 FHAD1B1AJZ9 1412 aa27.06■■□□□ 1.92
VPS13B-201ENST00000355155 EIF4G3O43432 1585 aaKnown RBP27.04■■□□□ 1.92
VPS13B-201ENST00000355155 ZNF608Q9ULD9 1512 aaPredicted RBP26.98■■□□□ 1.91
VPS13B-201ENST00000355155 AQRO60306 1485 aaKnown RBP eCLIP26.97■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms