Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 TMEM116-207ENST00000549425 615 ntAPPRIS ALT2 TSL 39.56□□□□□ -0.883e-7■■■■■ 114.9
SF3B1O75533 EPN2-221ENST00000582969 309 ntTSL 29.42□□□□□ -0.95e-7■■■■■ 114.9
SF3B1O75533 EPN2-207ENST00000441293 708 ntTSL 39.36□□□□□ -0.915e-7■■■■■ 114.9
SF3B1O75533 PUF60-210ENST00000527584 547 ntTSL 29.35□□□□□ -0.918e-14■■■■■ 114.9
SF3B1O75533 TMEM116-209ENST00000550020 572 ntTSL 49.3□□□□□ -0.923e-7■■■■■ 114.9
SF3B1O75533 MITF-202ENST00000314589 1993 ntTSL 2 BASIC9.27□□□□□ -0.925e-6■■■■■ 114.9
SF3B1O75533 CTAGE5-205ENST00000348007 2762 ntTSL 1 (best) BASIC9.25□□□□□ -0.935e-6■■■■■ 114.9
SF3B1O75533 TBC1D5-219ENST00000446818 3124 ntTSL 1 (best) BASIC9.2□□□□□ -0.942e-6■■■■■ 114.9
SF3B1O75533 ANP32A-206ENST00000483551 3711 ntTSL 59.13□□□□□ -0.955e-6■■■■■ 114.9
SF3B1O75533 CCDC84-204ENST00000527356 1781 ntTSL 29.05□□□□□ -0.968e-14■■■■■ 114.9
SF3B1O75533 MITF-210ENST00000451708 1116 ntTSL 58.83□□□□□ -15e-6■■■■■ 114.9
SF3B1O75533 TMEM116-205ENST00000547878 1716 ntTSL 28.82□□□□□ -13e-7■■■■■ 114.9
SF3B1O75533 RFC1-207ENST00000504554 561 ntTSL 48.73□□□□□ -1.018e-14■■■■■ 114.9
SF3B1O75533 TMEM116-201ENST00000355445 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC8.71□□□□□ -1.013e-7■■■■■ 114.9
SF3B1O75533 TMEM116-214ENST00000551297 660 ntTSL 38.18□□□□□ -1.13e-7■■■■■ 114.9
SF3B1O75533 RBM4-213ENST00000578778 582 ntTSL 4 BASIC7.82□□□□□ -1.165e-7■■■■■ 114.9
SF3B1O75533 TMEM116-206ENST00000548283 3640 ntTSL 57.55□□□□□ -1.23e-7■■■■■ 114.9
SF3B1O75533 PSMA3-203ENST00000553665 925 ntTSL 27.36□□□□□ -1.238e-14■■■■■ 114.9
SF3B1O75533 HPS5-207ENST00000537258 1275 ntTSL 5 BASIC7.36□□□□□ -1.235e-7■■■■■ 114.9
SF3B1O75533 CTAGE5-213ENST00000555716 558 ntTSL 47.36□□□□□ -1.235e-6■■■■■ 114.9
SF3B1O75533 TMEM116-208ENST00000549537 1229 ntAPPRIS ALT2 TSL 2 BASIC7.27□□□□□ -1.243e-7■■■■■ 114.9
SF3B1O75533 RTN4-205ENST00000394609 1898 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.262e-6■■■■■ 114.9
SF3B1O75533 PSMA3-209ENST00000555931 606 ntTSL 47.02□□□□□ -1.288e-14■■■■■ 114.9
SF3B1O75533 DIABLO-209ENST00000474004 804 ntTSL 27.01□□□□□ -1.293e-6■■■■■ 114.9
SF3B1O75533 EPB41L2-219ENST00000528179 560 ntTSL 56.99□□□□□ -1.295e-6■■■■■ 114.9
SF3B1O75533 PSMA3-208ENST00000555743 640 ntTSL 26.76□□□□□ -1.338e-14■■■■■ 114.9
SF3B1O75533 PSMA3-201ENST00000216455 970 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.358e-14■■■■■ 114.9
SF3B1O75533 EPB41L2-212ENST00000526333 549 ntTSL 56.5□□□□□ -1.375e-6■■■■■ 114.9
SF3B1O75533 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC6.29□□□□□ -1.45e-6■■■■■ 114.9
SF3B1O75533 PSMA3-202ENST00000412908 908 ntTSL 1 (best) BASIC6.18□□□□□ -1.428e-14■■■■■ 114.9
SF3B1O75533 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC6.17□□□□□ -1.425e-6■■■■■ 114.9
SF3B1O75533 EPN2-224ENST00000584633 546 ntTSL 46.17□□□□□ -1.425e-7■■■■■ 114.9
SF3B1O75533 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC5.77□□□□□ -1.495e-6■■■■■ 114.9
SF3B1O75533 ARHGAP12-209ENST00000497085 1641 ntTSL 1 (best)5.73□□□□□ -1.495e-7■■■■■ 114.9
SF3B1O75533 RALGPS2-201ENST00000324778 906 ntTSL 55.7□□□□□ -1.51e-6■■■■■ 114.9
SF3B1O75533 PPP2R1B-208ENST00000530787 131 ntTSL 1 (best)5.56□□□□□ -1.525e-7■■■■■ 114.9
SF3B1O75533 FTX-218ENST00000641360 3897 nt5.44□□□□□ -1.545e-7■■■■■ 114.9
SF3B1O75533 TMEM116-212ENST00000550800 718 ntAPPRIS ALT2 TSL 35.43□□□□□ -1.543e-7■■■■■ 114.9
SF3B1O75533 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.565e-6■■■■■ 114.9
SF3B1O75533 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.565e-6■■■■■ 114.9
SF3B1O75533 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC5.23□□□□□ -1.575e-6■■■■■ 114.9
SF3B1O75533 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC5.13□□□□□ -1.595e-6■■■■■ 114.9
SF3B1O75533 ARMC8-208ENST00000466762 3906 ntTSL 24.74□□□□□ -1.655e-6■■■■■ 114.9
SF3B1O75533 TMEM116-210ENST00000550037 640 ntAPPRIS ALT2 TSL 34.61□□□□□ -1.673e-7■■■■■ 114.9
SF3B1O75533 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC4.59□□□□□ -1.678e-14■■■■■ 114.9
SF3B1O75533 THOC7-202ENST00000464327 459 ntTSL 54.5□□□□□ -1.695e-7■■■■■ 114.9
SF3B1O75533 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.698e-14■■■■■ 114.9
SF3B1O75533 CTAGE5-211ENST00000554392 527 ntTSL 44.41□□□□□ -1.75e-6■■■■■ 114.9
SF3B1O75533 PSMA3-210ENST00000556321 500 ntTSL 24.29□□□□□ -1.728e-14■■■■■ 114.9
SF3B1O75533 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.755e-6■■■■■ 114.9
SF3B1O75533 HPS5-210ENST00000545561 1121 ntTSL 24.12□□□□□ -1.755e-7■■■■■ 114.9
SF3B1O75533 ARHGAP12-208ENST00000493008 2334 ntTSL 24.09□□□□□ -1.755e-7■■■■■ 114.9
SF3B1O75533 ORMDL1-205ENST00000442547 893 ntTSL 54.09□□□□□ -1.758e-14■■■■■ 114.9
SF3B1O75533 ARHGAP12-207ENST00000492028 3227 ntTSL 1 (best)3.84□□□□□ -1.795e-7■■■■■ 114.9
SF3B1O75533 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC3.76□□□□□ -1.815e-6■■■■■ 114.9
SF3B1O75533 PSMA3-211ENST00000557087 654 ntTSL 33.73□□□□□ -1.818e-14■■■■■ 114.9
SF3B1O75533 TMEM247-201ENST00000415396 678 ntTSL 33.19□□□□□ -1.95e-6■■■■■ 114.9
SF3B1O75533 GARS-205ENST00000470392 469 ntTSL 53.16□□□□□ -1.91e-12■■■■■ 114.9
SF3B1O75533 THOC7-205ENST00000473141 663 ntTSL 52.88□□□□□ -1.955e-7■■■■■ 114.9
SF3B1O75533 ZCCHC9-205ENST00000504502 401 ntTSL 32.76□□□□□ -1.978e-14■■■■■ 114.9
SF3B1O75533 DOCK11-204ENST00000633080 6041 ntTSL 52.54□□□□□ -24e-11■■■■■ 114.9
SF3B1O75533 GARS-202ENST00000444666 619 ntTSL 32.34□□□□□ -2.041e-12■■■■■ 114.9
SF3B1O75533 TMEM247-202ENST00000416466 474 ntTSL 22.01□□□□□ -2.095e-6■■■■■ 114.9
SF3B1O75533 PROSER1-208ENST00000602512 569 ntTSL 21.48□□□□□ -2.175e-6■■■■■ 114.9
SF3B1O75533 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC21.61■■□□□ 1.055e-6■■■■■ 114.8
SF3B1O75533 SLC13A3-203ENST00000372121 848 ntTSL 517.79■□□□□ 0.445e-6■■■■■ 114.8
SF3B1O75533 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.25e-6■■■■■ 114.8
SF3B1O75533 SLC13A3-209ENST00000468915 1597 ntTSL 515.89■□□□□ 0.135e-6■■■■■ 114.8
SF3B1O75533 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC15.8■□□□□ 0.125e-6■■■■■ 114.8
SF3B1O75533 SLC13A3-201ENST00000279027 4017 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.515e-6■■■■■ 114.8
SF3B1O75533 HDAC5-204ENST00000586802 3662 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.535e-6■■■■■ 114.8
SF3B1O75533 SLC13A3-210ENST00000472148 3283 ntTSL 5 BASIC10.37□□□□□ -0.755e-6■■■■■ 114.8
SF3B1O75533 SLC13A3-202ENST00000290317 3994 ntTSL 5 BASIC7.99□□□□□ -1.135e-6■■■■■ 114.8
SF3B1O75533 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.012e-6■■■■■ 114.7
SF3B1O75533 BCKDK-208ENST00000567530 1796 ntTSL 522.22■■□□□ 1.158e-9■■■■■ 114.7
SF3B1O75533 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.18e-9■■■■■ 114.7
SF3B1O75533 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC20.98■□□□□ 0.958e-9■■■■■ 114.7
SF3B1O75533 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC20.69■□□□□ 0.98e-9■■■■■ 114.7
SF3B1O75533 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC18.85■□□□□ 0.615e-6■■■■■ 114.7
SF3B1O75533 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC18.69■□□□□ 0.585e-6■■■■■ 114.7
SF3B1O75533 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.435e-6■■■■■ 114.7
SF3B1O75533 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.412e-6■■■■■ 114.7
SF3B1O75533 BCKDK-207ENST00000566568 2558 ntTSL 516.57■□□□□ 0.248e-9■■■■■ 114.7
SF3B1O75533 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC16.43■□□□□ 0.222e-6■■■■■ 114.7
SF3B1O75533 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.115e-6■■■■■ 114.7
SF3B1O75533 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC15.46■□□□□ 0.065e-6■■■■■ 114.7
SF3B1O75533 HSPG2-212ENST00000493940 584 ntTSL 513.79□□□□□ -0.25e-6■■■■■ 114.7
SF3B1O75533 BCKDK-204ENST00000394951 2164 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.358e-9■■■■■ 114.7
SF3B1O75533 ATAD2B-201ENST00000238789 8103 ntAPPRIS P1 TSL 5 BASIC11.03□□□□□ -0.647e-6■■■■■ 114.7
SF3B1O75533 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.061e-6■■■■■ 114.6
SF3B1O75533 CCDC88A-204ENST00000413716 9586 ntTSL 1 (best) BASIC14.02□□□□□ -0.171e-6■■■■■ 114.6
SF3B1O75533 CCDC88A-207ENST00000436346 9811 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.441e-6■■■■■ 114.6
SF3B1O75533 CCDC88A-202ENST00000336838 9505 ntAPPRIS ALT2 TSL 1 (best) BASIC10.54□□□□□ -0.721e-6■■■■■ 114.6
SF3B1O75533 DAPK1-206ENST00000469067 2499 ntTSL 217.2■□□□□ 0.345e-6■■■■■ 114.6
SF3B1O75533 R3HDM4-206ENST00000590454 1006 ntTSL 323.1■■□□□ 1.292e-7■■■■■ 114.6
SF3B1O75533 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC16.45■□□□□ 0.225e-8■■■■■ 114.5
SF3B1O75533 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.165e-8■■■■■ 114.5
SF3B1O75533 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.022e-6■■■■■ 114.5
SF3B1O75533 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC14.91□□□□□ -0.025e-8■■■■■ 114.5
SF3B1O75533 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC14.89□□□□□ -0.035e-8■■■■■ 114.5
Retrieved 100 of 46,956 protein–RNA pairs in 1300.6 ms