RNA–Protein interactions for RNA: ENST00000590454.2

R3HDM4-206, Transcript of R3H domain containing 4, humanhuman

TSL 3

Gene R3HDM4, Length 1,006 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
R3HDM4-206ENST00000590454 NISCHQ9Y2I1 1504 aa51.97■■■■■ 5.91
R3HDM4-206ENST00000590454 ABCC9O60706 1549 aa47.44■■■■■ 5.18
R3HDM4-206ENST00000590454 CCDC180Q9P1Z9 1646 aa46.81■■■■■ 5.08
R3HDM4-206ENST00000590454 DNAJC5BQ9UF47 199 aa45.05■■■■■ 4.8
R3HDM4-206ENST00000590454 RB1CC1Q8TDY2 1594 aa44.9■■■■■ 4.78
R3HDM4-206ENST00000590454 NACADO15069 1562 aa44.47■■■■■ 4.71
R3HDM4-206ENST00000590454 DCAF8L2P0C7V8 631 aa44.22■■■■■ 4.67
R3HDM4-206ENST00000590454 PABPN1Q86U42 306 aaKnown RBP eCLIP44.13■■■■■ 4.66
R3HDM4-206ENST00000590454 UNC13AQ9UPW8 1703 aa43.73■■■■■ 4.59
R3HDM4-206ENST00000590454 MYO15BQ96JP2 1530 aa43.68■■■■■ 4.58
R3HDM4-206ENST00000590454 BICRAQ9NZM4 1560 aa43.57■■■■■ 4.57
R3HDM4-206ENST00000590454 SHROOM4Q9ULL8 1493 aa42.99■■■■■ 4.47
R3HDM4-206ENST00000590454 ZCCHC6Q5VYS8 1495 aaKnown RBP42.93■■■■■ 4.46
R3HDM4-206ENST00000590454 DCAF1Q9Y4B6 1507 aa42.9■■■■■ 4.46
R3HDM4-206ENST00000590454 CECR2Q9BXF3 1484 aa42.81■■■■■ 4.44
R3HDM4-206ENST00000590454 CC2D2AQ9P2K1 1620 aa42.79■■■■■ 4.44
R3HDM4-206ENST00000590454 SCRIBQ14160 1630 aa42.63■■■■■ 4.41
R3HDM4-206ENST00000590454 EIF4G1Q04637 1599 aaKnown RBP42.57■■■■■ 4.41
R3HDM4-206ENST00000590454 DNAJC5Q9H3Z4 198 aa41.83■■■■■ 4.29
R3HDM4-206ENST00000590454 CUX2O14529 1486 aa41.15■■■■■ 4.18
R3HDM4-206ENST00000590454 NCAPD3P42695 1498 aa41.09■■■■■ 4.17
R3HDM4-206ENST00000590454 ERCC6Q03468 1493 aa41.03■■■■■ 4.16
R3HDM4-206ENST00000590454 ATAD2BQ9ULI0 1458 aa40.87■■■■■ 4.13
R3HDM4-206ENST00000590454 SMARCA2P51531 1590 aa40.71■■■■■ 4.11
R3HDM4-206ENST00000590454 HMGXB3Q12766 1538 aa40.67■■■■■ 4.1
R3HDM4-206ENST00000590454 SMARCA4P51532 1647 aa40.62■■■■■ 4.09
R3HDM4-206ENST00000590454 NESP48681 1621 aa40.57■■■■■ 4.09
R3HDM4-206ENST00000590454 BAZ1BQ9UIG0 1483 aaKnown RBP40.43■■■■■ 4.06
R3HDM4-206ENST00000590454 BAZ1AQ9NRL2 1556 aaPredicted RBP40.38■■■■■ 4.05
R3HDM4-206ENST00000590454 PEG3Q9GZU2 1588 aa40.25■■■■■ 4.03
R3HDM4-206ENST00000590454 THOC2Q8NI27 1593 aaKnown RBP40.23■■■■■ 4.03
R3HDM4-206ENST00000590454 LAMC3Q9Y6N6 1575 aa40.21■■■■■ 4.03
R3HDM4-206ENST00000590454 PDS5BQ9NTI5 1447 aa40.07■■■■■ 4
R3HDM4-206ENST00000590454 MROH2BQ7Z745 1585 aa40.02■■■■■ 4
R3HDM4-206ENST00000590454 KIF21AQ7Z4S6 1674 aa39.95■■■■□ 3.99
R3HDM4-206ENST00000590454 CADPSQ9ULU8 1353 aa39.84■■■■□ 3.97
R3HDM4-206ENST00000590454 TRIM41Q8WV44 630 aa39.75■■■■□ 3.95
R3HDM4-206ENST00000590454 MRC2Q9UBG0 1479 aa39.7■■■■□ 3.95
R3HDM4-206ENST00000590454 WDR62O43379 1518 aa39.6■■■■□ 3.93
R3HDM4-206ENST00000590454 WIZO95785 1651 aa39.48■■■■□ 3.91
R3HDM4-206ENST00000590454 CEP164Q9UPV0 1460 aa39.43■■■■□ 3.9
R3HDM4-206ENST00000590454 RSF1Q96T23 1441 aaPredicted RBP39.35■■■■□ 3.89
R3HDM4-206ENST00000590454 FANCD2Q9BXW9 1451 aa39.35■■■■□ 3.89
R3HDM4-206ENST00000590454 OSCARQ8IYS5 282 aa39.26■■■■□ 3.88
R3HDM4-206ENST00000590454 CFTRP13569 1480 aa39.24■■■■□ 3.87
R3HDM4-206ENST00000590454 URB2Q14146 1524 aaKnown RBP39.03■■■■□ 3.84
R3HDM4-206ENST00000590454 TOP2AP11388 1531 aaKnown RBP38.97■■■■□ 3.83
R3HDM4-206ENST00000590454 SUPT5HO00267 1087 aaKnown RBP38.71■■■■□ 3.79
R3HDM4-206ENST00000590454 IFT140Q96RY7 1462 aa38.69■■■■□ 3.78
R3HDM4-206ENST00000590454 RIMBP3CA6NJZ7 1639 aa38.66■■■■□ 3.78
R3HDM4-206ENST00000590454 RIMBP3BA6NNM3 1639 aa38.66■■■■□ 3.78
R3HDM4-206ENST00000590454 RIMBP3Q9UFD9 1639 aa38.66■■■■□ 3.78
R3HDM4-206ENST00000590454 ZNF608Q9ULD9 1512 aaPredicted RBP38.64■■■■□ 3.78
R3HDM4-206ENST00000590454 PRDM2Q13029 1718 aa38.63■■■■□ 3.77
R3HDM4-206ENST00000590454 CCDC88BA6NC98 1476 aa38.57■■■■□ 3.76
R3HDM4-206ENST00000590454 ARHGEF11O15085 1522 aa38.52■■■■□ 3.76
R3HDM4-206ENST00000590454 TOPBP1Q92547 1522 aa38.52■■■■□ 3.76
R3HDM4-206ENST00000590454 ABCC8Q09428 1581 aa38.45■■■■□ 3.75
R3HDM4-206ENST00000590454 CYB5RLQ6IPT4 315 aa38.36■■■■□ 3.73
R3HDM4-206ENST00000590454 EIF4G3O43432 1585 aaKnown RBP38.36■■■■□ 3.73
R3HDM4-206ENST00000590454 DNMBPQ6XZF7 1577 aa38.31■■■■□ 3.72
R3HDM4-206ENST00000590454 AQRO60306 1485 aaKnown RBP eCLIP38.26■■■■□ 3.721e-7■■■■■ 33.5
R3HDM4-206ENST00000590454 FBLN2P98095 1184 aa38.18■■■■□ 3.7
R3HDM4-206ENST00000590454 TARBP1Q13395 1621 aaKnown RBP38.18■■■■□ 3.7
R3HDM4-206ENST00000590454 CHD1O14646 1710 aa38.13■■■■□ 3.69
R3HDM4-206ENST00000590454 TRHP20396 242 aaPredicted RBP38.13■■■■□ 3.69
R3HDM4-206ENST00000590454 POLA1P09884 1462 aaPredicted RBP38.09■■■■□ 3.69
R3HDM4-206ENST00000590454 ARAP1Q96P48 1450 aa38.09■■■■□ 3.69
R3HDM4-206ENST00000590454 RAD54L2Q9Y4B4 1467 aa37.97■■■■□ 3.67
R3HDM4-206ENST00000590454 SOGA1O94964 1423 aa37.96■■■■□ 3.67
R3HDM4-206ENST00000590454 TDRD9Q8NDG6 1382 aaKnown RBP37.95■■■■□ 3.67
R3HDM4-206ENST00000590454 SNAPC4Q5SXM2 1469 aa37.83■■■■□ 3.65
R3HDM4-206ENST00000590454 CHMP7Q8WUX9 453 aaPredicted RBP37.82■■■■□ 3.64
R3HDM4-206ENST00000590454 WDR97A6NE52 1622 aa37.78■■■■□ 3.64
R3HDM4-206ENST00000590454 FGD5Q6ZNL6 1462 aa37.77■■■■□ 3.64
R3HDM4-206ENST00000590454 CLASP1Q7Z460 1538 aa37.75■■■■□ 3.63
R3HDM4-206ENST00000590454 MAGI1Q96QZ7 1491 aaPredicted RBP37.72■■■■□ 3.63
R3HDM4-206ENST00000590454 SYNJ1O43426 1573 aa37.71■■■■□ 3.63
R3HDM4-206ENST00000590454 GRIN2BQ13224 1484 aa37.68■■■■□ 3.62
R3HDM4-206ENST00000590454 CUX1P39880 1505 aa37.63■■■■□ 3.61
R3HDM4-206ENST00000590454 SYNJ2O15056 1496 aa37.61■■■■□ 3.61
R3HDM4-206ENST00000590454 GAPVD1Q14C86 1478 aa37.46■■■■□ 3.59
R3HDM4-206ENST00000590454 AEBP2Q6ZN18 517 aaPredicted RBP37.46■■■■□ 3.59
R3HDM4-206ENST00000590454 PBRM1Q86U86 1689 aa37.36■■■■□ 3.57
R3HDM4-206ENST00000590454 ABCA10Q8WWZ4 1543 aa37.32■■■■□ 3.57
R3HDM4-206ENST00000590454 ABCA5Q8WWZ7 1642 aa37.25■■■■□ 3.55
R3HDM4-206ENST00000590454 GRIN2AQ12879 1464 aa37.17■■■■□ 3.54
R3HDM4-206ENST00000590454 ERCC6L2Q5T890 1561 aa37.11■■■■□ 3.53
R3HDM4-206ENST00000590454 WRNQ14191 1432 aaPredicted RBP eCLIP37.1■■■■□ 3.53
R3HDM4-206ENST00000590454 NUP160Q12769 1436 aa37.08■■■■□ 3.53
R3HDM4-206ENST00000590454 CEP170Q5SW79 1584 aa37.04■■■■□ 3.52
R3HDM4-206ENST00000590454 ADAMTS12P58397 1594 aa37.02■■■■□ 3.52
R3HDM4-206ENST00000590454 FHAD1B1AJZ9 1412 aa36.98■■■■□ 3.51
R3HDM4-206ENST00000590454 TOP2BQ02880 1626 aa36.92■■■■□ 3.5
R3HDM4-206ENST00000590454 SHROOM2Q13796 1616 aa36.92■■■■□ 3.5
R3HDM4-206ENST00000590454 BIVM-ERCC5R4GMW8 1640 aa36.92■■■■□ 3.5
R3HDM4-206ENST00000590454 ERICH3Q5RHP9 1530 aa36.84■■■■□ 3.49
R3HDM4-206ENST00000590454 PRG4Q92954 1404 aaPredicted RBP36.79■■■■□ 3.48
R3HDM4-206ENST00000590454 JPH4Q96JJ6 628 aa36.77■■■■□ 3.48
R3HDM4-206ENST00000590454 KIF13AQ9H1H9 1805 aa36.67■■■■□ 3.46
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms