RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 PELP1Q8IZL8 1130 aaKnown RBP23.23■■□□□ 1.31
CCDC88A-201ENST00000263630 DCAF8L2P0C7V8 631 aa22.6■■□□□ 1.21
CCDC88A-201ENST00000263630 ERICH6Q7L0X2 663 aa22.14■■□□□ 1.14
CCDC88A-201ENST00000263630 CCER1Q8TC90 406 aaPredicted RBP22.13■■□□□ 1.13
CCDC88A-201ENST00000263630 MYT1Q01538 1121 aa21.85■■□□□ 1.09
CCDC88A-201ENST00000263630 APLP2Q06481 763 aa21.62■■□□□ 1.05
CCDC88A-201ENST00000263630 FAM9AQ8IZU1 332 aaPredicted RBP21.6■■□□□ 1.05
CCDC88A-201ENST00000263630 CENPBP07199 599 aaPredicted RBP21.47■■□□□ 1.03
CCDC88A-201ENST00000263630 SUPT5HO00267 1087 aaKnown RBP21.39■■□□□ 1.01
CCDC88A-201ENST00000263630 YTHDC1Q96MU7 727 aaKnown RBP21.38■■□□□ 1.01
CCDC88A-201ENST00000263630 NEFLP07196 543 aa21.22■□□□□ 0.99
CCDC88A-201ENST00000263630 EHMT2Q96KQ7 1210 aa21.11■□□□□ 0.97
CCDC88A-201ENST00000263630 DAXXQ9UER7 740 aaPredicted RBP21.08■□□□□ 0.97
CCDC88A-201ENST00000263630 ZEB1P37275 1124 aaPredicted RBP20.96■□□□□ 0.95
CCDC88A-201ENST00000263630 TTBK1Q5TCY1 1321 aaPredicted RBP20.75■□□□□ 0.91
CCDC88A-201ENST00000263630 PCGF6Q9BYE7 350 aa20.73■□□□□ 0.91
CCDC88A-201ENST00000263630 SHROOM4Q9ULL8 1493 aa20.53■□□□□ 0.88
CCDC88A-201ENST00000263630 RTL5Q5HYW3 569 aaPredicted RBP20.45■□□□□ 0.86
CCDC88A-201ENST00000263630 ZNF316A6NFI3 1004 aaPredicted RBP20.45■□□□□ 0.86
CCDC88A-201ENST00000263630 ATP1B4Q9UN42 357 aaPredicted RBP20.43■□□□□ 0.86
CCDC88A-201ENST00000263630 RANGAP1P46060 587 aaPredicted RBP20.21■□□□□ 0.83
CCDC88A-201ENST00000263630 CLSPNQ9HAW4 1339 aa20.18■□□□□ 0.82
CCDC88A-201ENST00000263630 UBTFP17480 764 aaKnown RBP20.02■□□□□ 0.79
CCDC88A-201ENST00000263630 POLR3GLQ9BT43 218 aa19.98■□□□□ 0.79
CCDC88A-201ENST00000263630 MYT1LQ9UL68 1186 aa19.95■□□□□ 0.78
CCDC88A-201ENST00000263630 TRIM41Q8WV44 630 aa19.93■□□□□ 0.78
CCDC88A-201ENST00000263630 ZBTB47Q9UFB7 747 aaPredicted RBP19.88■□□□□ 0.77
CCDC88A-201ENST00000263630 SLC4A1APQ9BWU0 796 aaKnown RBP19.86■□□□□ 0.77
CCDC88A-201ENST00000263630 GLIPR1L2Q4G1C9 344 aa19.78■□□□□ 0.76
CCDC88A-201ENST00000263630 ANP32BQ92688 251 aaKnown RBP19.68■□□□□ 0.74
CCDC88A-201ENST00000263630 NISCHQ9Y2I1 1504 aa19.67■□□□□ 0.74
CCDC88A-201ENST00000263630 TRIM26Q12899 539 aaPredicted RBP19.6■□□□□ 0.73
CCDC88A-201ENST00000263630 CNGB1Q14028 1251 aaPredicted RBP19.58■□□□□ 0.72
CCDC88A-201ENST00000263630 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.58■□□□□ 0.72
CCDC88A-201ENST00000263630 HNRNPUL2Q1KMD3 747 aaKnown RBP19.58■□□□□ 0.72
CCDC88A-201ENST00000263630 CDK11AQ9UQ88 783 aaPredicted RBP19.58■□□□□ 0.72
CCDC88A-201ENST00000263630 CHIC1Q5VXU3 224 aa19.51■□□□□ 0.71
CCDC88A-201ENST00000263630 HRCP23327 699 aa19.49■□□□□ 0.71
CCDC88A-201ENST00000263630 ITGAEP38570 1179 aa19.47■□□□□ 0.71
CCDC88A-201ENST00000263630 EIF5BO60841 1220 aaKnown RBP19.44■□□□□ 0.7
CCDC88A-201ENST00000263630 NEFMP07197 916 aa19.44■□□□□ 0.7
CCDC88A-201ENST00000263630 CANXP27824 592 aaKnown RBP19.41■□□□□ 0.7
CCDC88A-201ENST00000263630 ANP32AP39687 249 aaKnown RBP19.41■□□□□ 0.7
CCDC88A-201ENST00000263630 SLC24A1O60721 1099 aa19.36■□□□□ 0.69
CCDC88A-201ENST00000263630 PPARGC1BQ86YN6 1023 aaKnown RBP19.3■□□□□ 0.68
CCDC88A-201ENST00000263630 CDK11BP21127 795 aaKnown RBP19.3■□□□□ 0.68
CCDC88A-201ENST00000263630 DIEXFQ68CQ4 756 aaKnown RBP19.3■□□□□ 0.68
CCDC88A-201ENST00000263630 HSP90AA1P07900 732 aaKnown RBP19.29■□□□□ 0.68
CCDC88A-201ENST00000263630 ANP32CO43423 234 aa19.2■□□□□ 0.66
CCDC88A-201ENST00000263630 UPF2Q9HAU5 1272 aaKnown RBP19.19■□□□□ 0.66
CCDC88A-201ENST00000263630 BCL11AQ9H165 835 aa19.18■□□□□ 0.66
CCDC88A-201ENST00000263630 BCANQ96GW7 911 aa19.1■□□□□ 0.65
CCDC88A-201ENST00000263630 TNNT2P45379 298 aaPredicted RBP19.1■□□□□ 0.65
CCDC88A-201ENST00000263630 TRIM52Q96A61 297 aa19.02■□□□□ 0.64
CCDC88A-201ENST00000263630 NPM2Q86SE8 214 aaKnown RBP18.98■□□□□ 0.63
CCDC88A-201ENST00000263630 GTF3C3Q9Y5Q9 886 aa18.97■□□□□ 0.63
CCDC88A-201ENST00000263630 FAM50AQ14320 339 aaKnown RBP18.95■□□□□ 0.62
CCDC88A-201ENST00000263630 NEUROD1Q13562 356 aa18.87■□□□□ 0.61
CCDC88A-201ENST00000263630 ZNF326Q5BKZ1 582 aaKnown RBP18.85■□□□□ 0.61
CCDC88A-201ENST00000263630 TRIM44Q96DX7 344 aaPredicted RBP18.79■□□□□ 0.6
CCDC88A-201ENST00000263630 ANP32EQ9BTT0 268 aa18.79■□□□□ 0.6
CCDC88A-201ENST00000263630 NCLP19338 710 aaKnown RBP18.73■□□□□ 0.59
CCDC88A-201ENST00000263630 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.73■□□□□ 0.59
CCDC88A-201ENST00000263630 ZRSR1Q15695 479 aaKnown RBP18.68■□□□□ 0.58
CCDC88A-201ENST00000263630 ARXQ96QS3 562 aa18.66■□□□□ 0.58
CCDC88A-201ENST00000263630 GOLGA6L22H0YM25 854 aa18.64■□□□□ 0.57
CCDC88A-201ENST00000263630 MYH16Q9H6N6 1097 aa18.64■□□□□ 0.57
CCDC88A-201ENST00000263630 NBR1Q14596 966 aa18.63■□□□□ 0.57
CCDC88A-201ENST00000263630 BECN1Q14457 450 aa18.6■□□□□ 0.57
CCDC88A-201ENST00000263630 DNTTIP2Q5QJE6 756 aaKnown RBP18.57■□□□□ 0.56
CCDC88A-201ENST00000263630 DDRGK1Q96HY6 314 aa18.55■□□□□ 0.56
CCDC88A-201ENST00000263630 ESF1Q9H501 851 aaKnown RBP18.54■□□□□ 0.56
CCDC88A-201ENST00000263630 PTMAP06454 111 aaKnown RBP18.54■□□□□ 0.56
CCDC88A-201ENST00000263630 GOLGA6L6A8MZA4 724 aa18.53■□□□□ 0.56
CCDC88A-201ENST00000263630 CCDC136Q96JN2 1154 aa18.5■□□□□ 0.55
CCDC88A-201ENST00000263630 ACIN1Q9UKV3 1341 aaKnown RBP18.5■□□□□ 0.55
CCDC88A-201ENST00000263630 FKBP8Q14318 412 aa18.49■□□□□ 0.55
CCDC88A-201ENST00000263630 LOC105371045A0A1W2PR82 267 aa18.47■□□□□ 0.55
CCDC88A-201ENST00000263630 NRDCO43847 1150 aa18.45■□□□□ 0.54
CCDC88A-201ENST00000263630 ERICH6BQ5W0A0 696 aa18.45■□□□□ 0.54
CCDC88A-201ENST00000263630 STAG3Q9UJ98 1225 aa18.42■□□□□ 0.54
CCDC88A-201ENST00000263630 CASC1Q6TDU7 716 aa18.42■□□□□ 0.54
CCDC88A-201ENST00000263630 L1TD1Q5T7N2 865 aaKnown RBP18.41■□□□□ 0.54
CCDC88A-201ENST00000263630 WDR43Q15061 677 aaKnown RBP eCLIP18.38■□□□□ 0.535e-6■□□□□ 10.7
CCDC88A-201ENST00000263630 CHAF1AQ13111 956 aaPredicted RBP18.37■□□□□ 0.53
CCDC88A-201ENST00000263630 HNRNPUQ00839 825 aaKnown RBP eCLIP18.37■□□□□ 0.53
CCDC88A-201ENST00000263630 NAP1L5Q96NT1 182 aaPredicted RBP18.34■□□□□ 0.53
CCDC88A-201ENST00000263630 TULP1O00294 542 aaPredicted RBP18.33■□□□□ 0.52
CCDC88A-201ENST00000263630 TMC1Q8TDI8 760 aa18.32■□□□□ 0.52
CCDC88A-201ENST00000263630 TONSLQ96HA7 1378 aa18.28■□□□□ 0.52
CCDC88A-201ENST00000263630 FAM9BQ8IZU0 186 aa18.26■□□□□ 0.51
CCDC88A-201ENST00000263630 A0A0G2JS52 829 aa18.21■□□□□ 0.51
CCDC88A-201ENST00000263630 SCAF1Q9H7N4 1312 aaKnown RBP18.21■□□□□ 0.51
CCDC88A-201ENST00000263630 CHGAP10645 457 aaKnown RBP18.19■□□□□ 0.5
CCDC88A-201ENST00000263630 FBLN2P98095 1184 aa18.18■□□□□ 0.5
CCDC88A-201ENST00000263630 KIAA2012Q0VF49 1180 aa18.18■□□□□ 0.5
CCDC88A-201ENST00000263630 SALL2Q9Y467 1007 aaPredicted RBP18.18■□□□□ 0.5
CCDC88A-201ENST00000263630 PPM1GO15355 546 aaPredicted RBP18.17■□□□□ 0.5
CCDC88A-201ENST00000263630 PLCB2Q00722 1185 aa18.13■□□□□ 0.49
CCDC88A-201ENST00000263630 NCBP3Q53F19 620 aaKnown RBP18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 88.4 ms