RNA–Protein interactions for RNA: ENST00000472148.5

SLC13A3-210, Transcript of solute carrier family 13 member 3, humanhuman

TSL 5 BASIC

Gene SLC13A3, Length 3,283 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLC13A3-210ENST00000472148 NISCHQ9Y2I1 1504 aa20.22■□□□□ 0.83
SLC13A3-210ENST00000472148 SHROOM4Q9ULL8 1493 aa18.19■□□□□ 0.5
SLC13A3-210ENST00000472148 SUPT5HO00267 1087 aaKnown RBP17.91■□□□□ 0.46
SLC13A3-210ENST00000472148 DCAF8L2P0C7V8 631 aa17.74■□□□□ 0.43
SLC13A3-210ENST00000472148 CHIC1Q5VXU3 224 aa17.11■□□□□ 0.33
SLC13A3-210ENST00000472148 MYO15BQ96JP2 1530 aa17.07■□□□□ 0.32
SLC13A3-210ENST00000472148 ZCCHC6Q5VYS8 1495 aaKnown RBP17.06■□□□□ 0.32
SLC13A3-210ENST00000472148 PCGF6Q9BYE7 350 aa17.04■□□□□ 0.32
SLC13A3-210ENST00000472148 LOC105371045A0A1W2PR82 267 aa16.94■□□□□ 0.3
SLC13A3-210ENST00000472148 PPARGC1BQ86YN6 1023 aaKnown RBP16.88■□□□□ 0.29
SLC13A3-210ENST00000472148 EHMT2Q96KQ7 1210 aa16.87■□□□□ 0.29
SLC13A3-210ENST00000472148 HRCP23327 699 aa16.81■□□□□ 0.28
SLC13A3-210ENST00000472148 CCDC180Q9P1Z9 1646 aa16.71■□□□□ 0.27
SLC13A3-210ENST00000472148 FAM9AQ8IZU1 332 aaPredicted RBP16.69■□□□□ 0.26
SLC13A3-210ENST00000472148 TRIM41Q8WV44 630 aa16.43■□□□□ 0.22
SLC13A3-210ENST00000472148 SCRIBQ14160 1630 aa16.33■□□□□ 0.2
SLC13A3-210ENST00000472148 TRIM26Q12899 539 aaPredicted RBP16.32■□□□□ 0.2
SLC13A3-210ENST00000472148 TTBK1Q5TCY1 1321 aaPredicted RBP16.28■□□□□ 0.2
SLC13A3-210ENST00000472148 DCAF1Q9Y4B6 1507 aa16.24■□□□□ 0.19
SLC13A3-210ENST00000472148 RSF1Q96T23 1441 aaPredicted RBP16.22■□□□□ 0.19
SLC13A3-210ENST00000472148 ABCC9O60706 1549 aa16.2■□□□□ 0.18
SLC13A3-210ENST00000472148 RB1CC1Q8TDY2 1594 aa16.1■□□□□ 0.17
SLC13A3-210ENST00000472148 CECR2Q9BXF3 1484 aa16.07■□□□□ 0.16
SLC13A3-210ENST00000472148 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16■□□□□ 0.15
SLC13A3-210ENST00000472148 MROH2BQ7Z745 1585 aa15.91■□□□□ 0.14
SLC13A3-210ENST00000472148 CCER1Q8TC90 406 aaPredicted RBP15.88■□□□□ 0.13
SLC13A3-210ENST00000472148 ZEB1P37275 1124 aaPredicted RBP15.85■□□□□ 0.13
SLC13A3-210ENST00000472148 RANGAP1P46060 587 aaPredicted RBP15.82■□□□□ 0.12
SLC13A3-210ENST00000472148 WIZO95785 1651 aa15.81■□□□□ 0.12
SLC13A3-210ENST00000472148 PABPN1Q86U42 306 aaKnown RBP eCLIP15.8■□□□□ 0.12
SLC13A3-210ENST00000472148 SCAF1Q9H7N4 1312 aaKnown RBP15.75■□□□□ 0.11
SLC13A3-210ENST00000472148 UBTFP17480 764 aaKnown RBP15.74■□□□□ 0.11
SLC13A3-210ENST00000472148 ABCC8Q09428 1581 aa15.68■□□□□ 0.1
SLC13A3-210ENST00000472148 CCDC88BA6NC98 1476 aa15.63■□□□□ 0.09
SLC13A3-210ENST00000472148 SOGA1O94964 1423 aa15.61■□□□□ 0.09
SLC13A3-210ENST00000472148 NACADO15069 1562 aa15.61■□□□□ 0.09
SLC13A3-210ENST00000472148 HNRNPUL2Q1KMD3 747 aaKnown RBP15.6■□□□□ 0.09
SLC13A3-210ENST00000472148 YTHDC1Q96MU7 727 aaKnown RBP15.57■□□□□ 0.08
SLC13A3-210ENST00000472148 RUSC2Q8N2Y8 1516 aa15.56■□□□□ 0.08
SLC13A3-210ENST00000472148 NEUROD1Q13562 356 aa15.55■□□□□ 0.08
SLC13A3-210ENST00000472148 DIEXFQ68CQ4 756 aaKnown RBP15.55■□□□□ 0.08
SLC13A3-210ENST00000472148 CSRNP3Q8WYN3 585 aa15.51■□□□□ 0.07
SLC13A3-210ENST00000472148 CEP162Q5TB80 1403 aa15.5■□□□□ 0.07
SLC13A3-210ENST00000472148 BAZ1AQ9NRL2 1556 aaPredicted RBP15.46■□□□□ 0.06
SLC13A3-210ENST00000472148 GTF3C3Q9Y5Q9 886 aa15.44■□□□□ 0.06
SLC13A3-210ENST00000472148 ACIN1Q9UKV3 1341 aaKnown RBP15.42■□□□□ 0.06
SLC13A3-210ENST00000472148 TOP2AP11388 1531 aaKnown RBP15.34■□□□□ 0.05
SLC13A3-210ENST00000472148 SMARCA2P51531 1590 aa15.34■□□□□ 0.05
SLC13A3-210ENST00000472148 SMARCA4P51532 1647 aa15.33■□□□□ 0.04
SLC13A3-210ENST00000472148 APLP2Q06481 763 aa15.33■□□□□ 0.04
SLC13A3-210ENST00000472148 TNIKQ9UKE5 1360 aa15.31■□□□□ 0.04
SLC13A3-210ENST00000472148 EIF4G1Q04637 1599 aaKnown RBP15.31■□□□□ 0.04
SLC13A3-210ENST00000472148 CENPBP07199 599 aaPredicted RBP15.29■□□□□ 0.04
SLC13A3-210ENST00000472148 ZNF316A6NFI3 1004 aaPredicted RBP15.28■□□□□ 0.04
SLC13A3-210ENST00000472148 WRNQ14191 1432 aaPredicted RBP eCLIP15.27■□□□□ 0.03
SLC13A3-210ENST00000472148 ITGAEP38570 1179 aa15.27■□□□□ 0.03
SLC13A3-210ENST00000472148 MIER1Q8N108 512 aa15.26■□□□□ 0.03
SLC13A3-210ENST00000472148 GOLGA3Q08378 1498 aa15.21■□□□□ 0.03
SLC13A3-210ENST00000472148 CLIP1P30622 1438 aa15.19■□□□□ 0.02
SLC13A3-210ENST00000472148 UNC13AQ9UPW8 1703 aa15.14■□□□□ 0.01
SLC13A3-210ENST00000472148 RAPGEF2Q9Y4G8 1499 aa15.14■□□□□ 0.01
SLC13A3-210ENST00000472148 PELP1Q8IZL8 1130 aaKnown RBP15.13■□□□□ 0.01
SLC13A3-210ENST00000472148 SYNJ1O43426 1573 aa15.12■□□□□ 0.01
SLC13A3-210ENST00000472148 KANK4Q5T7N3 995 aaPredicted RBP15.11■□□□□ 0.01
SLC13A3-210ENST00000472148 EEA1Q15075 1411 aa15.09■□□□□ 0.01
SLC13A3-210ENST00000472148 ATP1B4Q9UN42 357 aaPredicted RBP15.08■□□□□ 0
SLC13A3-210ENST00000472148 CEP164Q9UPV0 1460 aa15.07■□□□□ 0
SLC13A3-210ENST00000472148 BAZ1BQ9UIG0 1483 aaKnown RBP15.05■□□□□ 0
SLC13A3-210ENST00000472148 BICRAQ9NZM4 1560 aa15.05■□□□□ -0
SLC13A3-210ENST00000472148 ATAD2BQ9ULI0 1458 aa15.03■□□□□ -0
SLC13A3-210ENST00000472148 VPS8Q8N3P4 1428 aa15.01□□□□□ -0.01
SLC13A3-210ENST00000472148 P3H3Q8IVL6 736 aa15.01□□□□□ -0.01
SLC13A3-210ENST00000472148 KIF21BO75037 1637 aa14.92□□□□□ -0.02
SLC13A3-210ENST00000472148 HIRIP3Q9BW71 556 aaPredicted RBP14.92□□□□□ -0.02
SLC13A3-210ENST00000472148 KCNH8Q96L42 1107 aa14.9□□□□□ -0.02
SLC13A3-210ENST00000472148 FAM50AQ14320 339 aaKnown RBP14.88□□□□□ -0.03
SLC13A3-210ENST00000472148 DHX57Q6P158 1386 aaKnown RBP14.86□□□□□ -0.03
SLC13A3-210ENST00000472148 BCANQ96GW7 911 aa14.84□□□□□ -0.03
SLC13A3-210ENST00000472148 ARAP1Q96P48 1450 aa14.83□□□□□ -0.03
SLC13A3-210ENST00000472148 SIN3AQ96ST3 1273 aa14.83□□□□□ -0.04
SLC13A3-210ENST00000472148 DDX10Q13206 875 aaKnown RBP14.76□□□□□ -0.05
SLC13A3-210ENST00000472148 PEG3Q9GZU2 1588 aa14.76□□□□□ -0.05
SLC13A3-210ENST00000472148 KIF27Q86VH2 1401 aa14.75□□□□□ -0.05
SLC13A3-210ENST00000472148 CUX1P39880 1505 aa14.74□□□□□ -0.05
SLC13A3-210ENST00000472148 CCNB3Q8WWL7 1395 aa14.73□□□□□ -0.05
SLC13A3-210ENST00000472148 PRXQ9BXM0 1461 aa14.73□□□□□ -0.05
SLC13A3-210ENST00000472148 TOP2BQ02880 1626 aa14.73□□□□□ -0.05
SLC13A3-210ENST00000472148 CUX2O14529 1486 aa14.71□□□□□ -0.05
SLC13A3-210ENST00000472148 SUPT16HQ9Y5B9 1047 aaKnown RBP14.7□□□□□ -0.06
SLC13A3-210ENST00000472148 RAB3GAP2Q9H2M9 1393 aa14.7□□□□□ -0.06
SLC13A3-210ENST00000472148 ARID3CA6NKF2 412 aa14.69□□□□□ -0.06
SLC13A3-210ENST00000472148 ARHGAP35Q9NRY4 1499 aa14.68□□□□□ -0.06
SLC13A3-210ENST00000472148 TRIM52Q96A61 297 aa14.65□□□□□ -0.06
SLC13A3-210ENST00000472148 IGF1RP08069 1367 aa14.64□□□□□ -0.07
SLC13A3-210ENST00000472148 CARMIL1Q5VZK9 1371 aa14.62□□□□□ -0.07
SLC13A3-210ENST00000472148 PHLDB1Q86UU1 1377 aa14.61□□□□□ -0.07
SLC13A3-210ENST00000472148 RRBP1Q9P2E9 1410 aaKnown RBP14.59□□□□□ -0.07
SLC13A3-210ENST00000472148 CNGB1Q14028 1251 aaPredicted RBP14.59□□□□□ -0.07
SLC13A3-210ENST00000472148 FKBP8Q14318 412 aa14.58□□□□□ -0.08
SLC13A3-210ENST00000472148 FHOD3Q2V2M9 1422 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms