RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 NISCHQ9Y2I1 1504 aa17.72■□□□□ 0.43
CCDC88A-202ENST00000336838 DCAF8L2P0C7V8 631 aa16.72■□□□□ 0.27
CCDC88A-202ENST00000336838 PELP1Q8IZL8 1130 aaKnown RBP16.47■□□□□ 0.23
CCDC88A-202ENST00000336838 SUPT5HO00267 1087 aaKnown RBP16.38■□□□□ 0.21
CCDC88A-202ENST00000336838 ZEB1P37275 1124 aaPredicted RBP16.1■□□□□ 0.17
CCDC88A-202ENST00000336838 SHROOM4Q9ULL8 1493 aa16.08■□□□□ 0.17
CCDC88A-202ENST00000336838 MYT1Q01538 1121 aa16.01■□□□□ 0.15
CCDC88A-202ENST00000336838 APLP2Q06481 763 aa15.9■□□□□ 0.14
CCDC88A-202ENST00000336838 CENPBP07199 599 aaPredicted RBP15.83■□□□□ 0.12
CCDC88A-202ENST00000336838 PCGF6Q9BYE7 350 aa15.66■□□□□ 0.1
CCDC88A-202ENST00000336838 CCER1Q8TC90 406 aaPredicted RBP15.63■□□□□ 0.09
CCDC88A-202ENST00000336838 FAM9AQ8IZU1 332 aaPredicted RBP15.63■□□□□ 0.09
CCDC88A-202ENST00000336838 TRIM41Q8WV44 630 aa15.5■□□□□ 0.07
CCDC88A-202ENST00000336838 TRIM26Q12899 539 aaPredicted RBP15.41■□□□□ 0.06
CCDC88A-202ENST00000336838 HRCP23327 699 aa15.32■□□□□ 0.04
CCDC88A-202ENST00000336838 ERICH6Q7L0X2 663 aa15.31■□□□□ 0.04
CCDC88A-202ENST00000336838 NEFLP07196 543 aa15.28■□□□□ 0.04
CCDC88A-202ENST00000336838 CCDC180Q9P1Z9 1646 aa15.25■□□□□ 0.03
CCDC88A-202ENST00000336838 EHMT2Q96KQ7 1210 aa15.24■□□□□ 0.03
CCDC88A-202ENST00000336838 UBTFP17480 764 aaKnown RBP15.15■□□□□ 0.02
CCDC88A-202ENST00000336838 CHIC1Q5VXU3 224 aa15.03■□□□□ -0
CCDC88A-202ENST00000336838 YTHDC1Q96MU7 727 aaKnown RBP14.92□□□□□ -0.02
CCDC88A-202ENST00000336838 TTBK1Q5TCY1 1321 aaPredicted RBP14.91□□□□□ -0.02
CCDC88A-202ENST00000336838 CLSPNQ9HAW4 1339 aa14.85□□□□□ -0.03
CCDC88A-202ENST00000336838 DCAF1Q9Y4B6 1507 aa14.85□□□□□ -0.03
CCDC88A-202ENST00000336838 ZCCHC6Q5VYS8 1495 aaKnown RBP14.81□□□□□ -0.04
CCDC88A-202ENST00000336838 DIEXFQ68CQ4 756 aaKnown RBP14.75□□□□□ -0.05
CCDC88A-202ENST00000336838 DAXXQ9UER7 740 aaPredicted RBP14.74□□□□□ -0.05
CCDC88A-202ENST00000336838 ATP1B4Q9UN42 357 aaPredicted RBP14.73□□□□□ -0.05
CCDC88A-202ENST00000336838 RANGAP1P46060 587 aaPredicted RBP14.7□□□□□ -0.06
CCDC88A-202ENST00000336838 LOC105371045A0A1W2PR82 267 aa14.62□□□□□ -0.07
CCDC88A-202ENST00000336838 RTL5Q5HYW3 569 aaPredicted RBP14.55□□□□□ -0.08
CCDC88A-202ENST00000336838 HNRNPUL2Q1KMD3 747 aaKnown RBP14.48□□□□□ -0.09
CCDC88A-202ENST00000336838 SCRIBQ14160 1630 aa14.47□□□□□ -0.09
CCDC88A-202ENST00000336838 PPARGC1BQ86YN6 1023 aaKnown RBP14.47□□□□□ -0.09
CCDC88A-202ENST00000336838 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.46□□□□□ -0.09
CCDC88A-202ENST00000336838 ZNF316A6NFI3 1004 aaPredicted RBP14.46□□□□□ -0.1
CCDC88A-202ENST00000336838 MYT1LQ9UL68 1186 aa14.45□□□□□ -0.1
CCDC88A-202ENST00000336838 ANP32CO43423 234 aa14.4□□□□□ -0.1
CCDC88A-202ENST00000336838 EEA1Q15075 1411 aa14.39□□□□□ -0.11
CCDC88A-202ENST00000336838 ACIN1Q9UKV3 1341 aaKnown RBP14.39□□□□□ -0.11
CCDC88A-202ENST00000336838 GTF3C3Q9Y5Q9 886 aa14.36□□□□□ -0.11
CCDC88A-202ENST00000336838 ITGAEP38570 1179 aa14.35□□□□□ -0.11
CCDC88A-202ENST00000336838 CDK11AQ9UQ88 783 aaPredicted RBP14.35□□□□□ -0.11
CCDC88A-202ENST00000336838 NACADO15069 1562 aa14.34□□□□□ -0.11
CCDC88A-202ENST00000336838 ABCC9O60706 1549 aa14.32□□□□□ -0.12
CCDC88A-202ENST00000336838 RB1CC1Q8TDY2 1594 aa14.31□□□□□ -0.12
CCDC88A-202ENST00000336838 FAM50AQ14320 339 aaKnown RBP14.26□□□□□ -0.13
CCDC88A-202ENST00000336838 CSRNP3Q8WYN3 585 aa14.25□□□□□ -0.13
CCDC88A-202ENST00000336838 ANP32AP39687 249 aaKnown RBP14.18□□□□□ -0.14
CCDC88A-202ENST00000336838 POLR3GLQ9BT43 218 aa14.18□□□□□ -0.14
CCDC88A-202ENST00000336838 GOLGA3Q08378 1498 aa14.14□□□□□ -0.15
CCDC88A-202ENST00000336838 TRIM52Q96A61 297 aa14.12□□□□□ -0.15
CCDC88A-202ENST00000336838 BAZ1AQ9NRL2 1556 aaPredicted RBP14.1□□□□□ -0.15
CCDC88A-202ENST00000336838 TONSLQ96HA7 1378 aa14.1□□□□□ -0.15
CCDC88A-202ENST00000336838 NEUROD1Q13562 356 aa14.07□□□□□ -0.16
CCDC88A-202ENST00000336838 CLIP1P30622 1438 aa14.05□□□□□ -0.16
CCDC88A-202ENST00000336838 CEP164Q9UPV0 1460 aa14.04□□□□□ -0.16
CCDC88A-202ENST00000336838 ZBTB47Q9UFB7 747 aaPredicted RBP14.03□□□□□ -0.16
CCDC88A-202ENST00000336838 MYO15BQ96JP2 1530 aa14.01□□□□□ -0.17
CCDC88A-202ENST00000336838 RSF1Q96T23 1441 aaPredicted RBP13.98□□□□□ -0.17
CCDC88A-202ENST00000336838 CEP162Q5TB80 1403 aa13.98□□□□□ -0.17
CCDC88A-202ENST00000336838 TNIKQ9UKE5 1360 aa13.96□□□□□ -0.18
CCDC88A-202ENST00000336838 NEFMP07197 916 aa13.95□□□□□ -0.18
CCDC88A-202ENST00000336838 CANXP27824 592 aaKnown RBP13.93□□□□□ -0.18
CCDC88A-202ENST00000336838 UPF2Q9HAU5 1272 aaKnown RBP13.93□□□□□ -0.18
CCDC88A-202ENST00000336838 ANP32BQ92688 251 aaKnown RBP13.93□□□□□ -0.18
CCDC88A-202ENST00000336838 GLIPR1L2Q4G1C9 344 aa13.93□□□□□ -0.18
CCDC88A-202ENST00000336838 BCANQ96GW7 911 aa13.9□□□□□ -0.18
CCDC88A-202ENST00000336838 SLC4A1APQ9BWU0 796 aaKnown RBP13.89□□□□□ -0.19
CCDC88A-202ENST00000336838 PABPN1Q86U42 306 aaKnown RBP eCLIP13.89□□□□□ -0.19
CCDC88A-202ENST00000336838 WRNQ14191 1432 aaPredicted RBP eCLIP13.87□□□□□ -0.19
CCDC88A-202ENST00000336838 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.87□□□□□ -0.19
CCDC88A-202ENST00000336838 BAZ1BQ9UIG0 1483 aaKnown RBP13.86□□□□□ -0.19
CCDC88A-202ENST00000336838 KIF27Q86VH2 1401 aa13.85□□□□□ -0.19
CCDC88A-202ENST00000336838 FKBP8Q14318 412 aa13.84□□□□□ -0.19
CCDC88A-202ENST00000336838 ANP32EQ9BTT0 268 aa13.84□□□□□ -0.19
CCDC88A-202ENST00000336838 FHAD1B1AJZ9 1412 aa13.84□□□□□ -0.19
CCDC88A-202ENST00000336838 EIF5BO60841 1220 aaKnown RBP13.83□□□□□ -0.2
CCDC88A-202ENST00000336838 ZNF326Q5BKZ1 582 aaKnown RBP13.82□□□□□ -0.2
CCDC88A-202ENST00000336838 MTUS2Q5JR59 1369 aa13.82□□□□□ -0.2
CCDC88A-202ENST00000336838 HNRNPUQ00839 825 aaKnown RBP eCLIP13.81□□□□□ -0.2
CCDC88A-202ENST00000336838 TIMELESSQ9UNS1 1208 aa13.81□□□□□ -0.2
CCDC88A-202ENST00000336838 SCAF1Q9H7N4 1312 aaKnown RBP13.8□□□□□ -0.2
CCDC88A-202ENST00000336838 SMARCA2P51531 1590 aa13.78□□□□□ -0.2
CCDC88A-202ENST00000336838 DDRGK1Q96HY6 314 aa13.78□□□□□ -0.2
CCDC88A-202ENST00000336838 CNGB1Q14028 1251 aaPredicted RBP13.76□□□□□ -0.21
CCDC88A-202ENST00000336838 CCDC136Q96JN2 1154 aa13.75□□□□□ -0.21
CCDC88A-202ENST00000336838 TOP2AP11388 1531 aaKnown RBP13.72□□□□□ -0.21
CCDC88A-202ENST00000336838 EIF4G2P78344 907 aaKnown RBP eCLIP13.72□□□□□ -0.21
CCDC88A-202ENST00000336838 TMC1Q8TDI8 760 aa13.72□□□□□ -0.21
CCDC88A-202ENST00000336838 DDX10Q13206 875 aaKnown RBP13.7□□□□□ -0.22
CCDC88A-202ENST00000336838 HSP90AA1P07900 732 aaKnown RBP13.7□□□□□ -0.22
CCDC88A-202ENST00000336838 VPS8Q8N3P4 1428 aa13.69□□□□□ -0.22
CCDC88A-202ENST00000336838 SLC24A1O60721 1099 aa13.69□□□□□ -0.22
CCDC88A-202ENST00000336838 ERICH6BQ5W0A0 696 aa13.69□□□□□ -0.22
CCDC88A-202ENST00000336838 BECN1Q14457 450 aa13.68□□□□□ -0.22
CCDC88A-202ENST00000336838 MIER1Q8N108 512 aa13.68□□□□□ -0.22
CCDC88A-202ENST00000336838 MRS2Q9HD23 443 aa13.66□□□□□ -0.22
CCDC88A-202ENST00000336838 CDCA8Q53HL2 280 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms