RNA–Protein interactions for RNA: ENST00000504554.1

RFC1-207, Transcript of replication factor C subunit 1, humanhuman

TSL 4

Gene RFC1, Length 561 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC1-207ENST00000504554 AEBP2Q6ZN18 517 aaPredicted RBP24.42■■□□□ 1.5
RFC1-207ENST00000504554 CHIC1Q5VXU3 224 aa23.13■■□□□ 1.29
RFC1-207ENST00000504554 SENP3Q9H4L4 574 aaPredicted RBP20.78■□□□□ 0.92
RFC1-207ENST00000504554 PHF23Q9BUL5 403 aaPredicted RBP20.52■□□□□ 0.88
RFC1-207ENST00000504554 NISCHQ9Y2I1 1504 aa19.71■□□□□ 0.75
RFC1-207ENST00000504554 FOXD1Q16676 465 aa19.4■□□□□ 0.7
RFC1-207ENST00000504554 PLPPR3Q6T4P5 718 aa18.44■□□□□ 0.54
RFC1-207ENST00000504554 PPP6R1Q9UPN7 881 aa18.14■□□□□ 0.49
RFC1-207ENST00000504554 MSH5O43196 834 aa18.12■□□□□ 0.49
RFC1-207ENST00000504554 PIAS4Q8N2W9 510 aaPredicted RBP18.11■□□□□ 0.49
RFC1-207ENST00000504554 ADRA2BP18089 450 aa18.06■□□□□ 0.48
RFC1-207ENST00000504554 POTEDQ86YR6 584 aa17.77■□□□□ 0.44
RFC1-207ENST00000504554 CCDC180Q9P1Z9 1646 aa17.47■□□□□ 0.39
RFC1-207ENST00000504554 ABCC9O60706 1549 aa17.32■□□□□ 0.36
RFC1-207ENST00000504554 MAPK8IP2Q13387 824 aaPredicted RBP16.6■□□□□ 0.25
RFC1-207ENST00000504554 RB1CC1Q8TDY2 1594 aa16.52■□□□□ 0.24
RFC1-207ENST00000504554 DCAF8L2P0C7V8 631 aa16.52■□□□□ 0.24
RFC1-207ENST00000504554 DMRT2Q9Y5R5 561 aa16.49■□□□□ 0.23
RFC1-207ENST00000504554 NACADO15069 1562 aa16.48■□□□□ 0.23
RFC1-207ENST00000504554 SCAF1Q9H7N4 1312 aaKnown RBP16.45■□□□□ 0.22
RFC1-207ENST00000504554 ZCCHC6Q5VYS8 1495 aaKnown RBP16.4■□□□□ 0.22
RFC1-207ENST00000504554 MYO15BQ96JP2 1530 aa16.35■□□□□ 0.21
RFC1-207ENST00000504554 DCAF1Q9Y4B6 1507 aa16.25■□□□□ 0.19
RFC1-207ENST00000504554 PABPN1Q86U42 306 aaKnown RBP eCLIP16.21■□□□□ 0.19
RFC1-207ENST00000504554 PPP4R3CPQ6ZMV5 832 aa16.18■□□□□ 0.18
RFC1-207ENST00000504554 UNC13AQ9UPW8 1703 aa16.15■□□□□ 0.18
RFC1-207ENST00000504554 BICRAQ9NZM4 1560 aa16.12■□□□□ 0.17
RFC1-207ENST00000504554 DNAJC5BQ9UF47 199 aa16.1■□□□□ 0.17
RFC1-207ENST00000504554 SCRIBQ14160 1630 aa16.02■□□□□ 0.16
RFC1-207ENST00000504554 HOXD11P31277 338 aaPredicted RBP15.87■□□□□ 0.13
RFC1-207ENST00000504554 CNKSR2Q8WXI2 1034 aa15.87■□□□□ 0.13
RFC1-207ENST00000504554 SHROOM4Q9ULL8 1493 aa15.82■□□□□ 0.12
RFC1-207ENST00000504554 DCAF8L1A6NGE4 600 aa15.79■□□□□ 0.12
RFC1-207ENST00000504554 RNF216Q9NWF9 866 aaPredicted RBP15.73■□□□□ 0.11
RFC1-207ENST00000504554 EIF4G1Q04637 1599 aaKnown RBP15.66■□□□□ 0.1
RFC1-207ENST00000504554 CC2D2AQ9P2K1 1620 aa15.63■□□□□ 0.09
RFC1-207ENST00000504554 CACNB1Q02641 598 aaPredicted RBP15.57■□□□□ 0.08
RFC1-207ENST00000504554 CECR2Q9BXF3 1484 aa15.55■□□□□ 0.08
RFC1-207ENST00000504554 NCBP3Q53F19 620 aaKnown RBP15.5■□□□□ 0.07
RFC1-207ENST00000504554 RNF39Q9H2S5 420 aa15.49■□□□□ 0.07
RFC1-207ENST00000504554 NPM3O75607 178 aaKnown RBP15.34■□□□□ 0.05
RFC1-207ENST00000504554 SMARCA4P51532 1647 aa15.29■□□□□ 0.04
RFC1-207ENST00000504554 ATAD2BQ9ULI0 1458 aa15.27■□□□□ 0.04
RFC1-207ENST00000504554 NCAPD3P42695 1498 aa15.27■□□□□ 0.03
RFC1-207ENST00000504554 C1QBPQ07021 282 aaKnown RBP15.23■□□□□ 0.03
RFC1-207ENST00000504554 MROH2BQ7Z745 1585 aa15.23■□□□□ 0.03
RFC1-207ENST00000504554 BAZ1AQ9NRL2 1556 aaPredicted RBP15.23■□□□□ 0.03
RFC1-207ENST00000504554 SMARCA2P51531 1590 aa15.17■□□□□ 0.02
RFC1-207ENST00000504554 HMGXB3Q12766 1538 aa15.14■□□□□ 0.01
RFC1-207ENST00000504554 PEG3Q9GZU2 1588 aa15.14■□□□□ 0.01
RFC1-207ENST00000504554 BAZ1BQ9UIG0 1483 aaKnown RBP15.1■□□□□ 0.01
RFC1-207ENST00000504554 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.09■□□□□ 0.012e-6■□□□□ 10.8
RFC1-207ENST00000504554 KCNA4P22459 653 aa15.04■□□□□ -0
RFC1-207ENST00000504554 WIZO95785 1651 aa15.03■□□□□ -0
RFC1-207ENST00000504554 RSF1Q96T23 1441 aaPredicted RBP15.01□□□□□ -0.01
RFC1-207ENST00000504554 NESP48681 1621 aa14.99□□□□□ -0.01
RFC1-207ENST00000504554 ERCC6Q03468 1493 aa14.88□□□□□ -0.03
RFC1-207ENST00000504554 TOP2AP11388 1531 aaKnown RBP14.83□□□□□ -0.04
RFC1-207ENST00000504554 U3KPZ7 1027 aaPredicted RBP14.82□□□□□ -0.04
RFC1-207ENST00000504554 CADPSQ9ULU8 1353 aa14.82□□□□□ -0.04
RFC1-207ENST00000504554 LAMC3Q9Y6N6 1575 aa14.81□□□□□ -0.04
RFC1-207ENST00000504554 CUX2O14529 1486 aa14.75□□□□□ -0.05
RFC1-207ENST00000504554 PDS5BQ9NTI5 1447 aa14.75□□□□□ -0.05
RFC1-207ENST00000504554 THOC2Q8NI27 1593 aaKnown RBP14.73□□□□□ -0.05
RFC1-207ENST00000504554 KIF21AQ7Z4S6 1674 aa14.72□□□□□ -0.05
RFC1-207ENST00000504554 CCDC88BA6NC98 1476 aa14.71□□□□□ -0.05
RFC1-207ENST00000504554 CFTRP13569 1480 aa14.71□□□□□ -0.05
RFC1-207ENST00000504554 SLC4A2P04920 1241 aa14.68□□□□□ -0.06
RFC1-207ENST00000504554 FANCD2Q9BXW9 1451 aa14.63□□□□□ -0.07
RFC1-207ENST00000504554 MRC2Q9UBG0 1479 aa14.62□□□□□ -0.07
RFC1-207ENST00000504554 SPINK5Q9NQ38 1064 aaPredicted RBP14.61□□□□□ -0.07
RFC1-207ENST00000504554 CEP164Q9UPV0 1460 aa14.6□□□□□ -0.07
RFC1-207ENST00000504554 WDR62O43379 1518 aa14.57□□□□□ -0.08
RFC1-207ENST00000504554 SUPT5HO00267 1087 aaKnown RBP14.55□□□□□ -0.08
RFC1-207ENST00000504554 CAPN15O75808 1086 aa14.55□□□□□ -0.08
RFC1-207ENST00000504554 URB2Q14146 1524 aaKnown RBP14.54□□□□□ -0.08
RFC1-207ENST00000504554 DSG3P32926 999 aa14.5□□□□□ -0.09
RFC1-207ENST00000504554 DNAJC5Q9H3Z4 198 aa14.49□□□□□ -0.09
RFC1-207ENST00000504554 PRDM2Q13029 1718 aa14.46□□□□□ -0.1
RFC1-207ENST00000504554 TOPBP1Q92547 1522 aa14.4□□□□□ -0.1
RFC1-207ENST00000504554 DNMBPQ6XZF7 1577 aa14.34□□□□□ -0.11
RFC1-207ENST00000504554 EHMT2Q96KQ7 1210 aa14.34□□□□□ -0.11
RFC1-207ENST00000504554 ZNF608Q9ULD9 1512 aaPredicted RBP14.33□□□□□ -0.12
RFC1-207ENST00000504554 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.32□□□□□ -0.12
RFC1-207ENST00000504554 TRHP20396 242 aaPredicted RBP14.32□□□□□ -0.12
RFC1-207ENST00000504554 APLP2Q06481 763 aa14.32□□□□□ -0.12
RFC1-207ENST00000504554 HNRNPUL2Q1KMD3 747 aaKnown RBP14.32□□□□□ -0.12
RFC1-207ENST00000504554 ABCC8Q09428 1581 aa14.31□□□□□ -0.12
RFC1-207ENST00000504554 IFT140Q96RY7 1462 aa14.31□□□□□ -0.12
RFC1-207ENST00000504554 SLC4A1APQ9BWU0 796 aaKnown RBP14.3□□□□□ -0.12
RFC1-207ENST00000504554 POLA1P09884 1462 aaPredicted RBP14.29□□□□□ -0.12
RFC1-207ENST00000504554 CUX1P39880 1505 aa14.28□□□□□ -0.12
RFC1-207ENST00000504554 ZNF219Q9P2Y4 722 aaPredicted RBP14.27□□□□□ -0.13
RFC1-207ENST00000504554 RAD54L2Q9Y4B4 1467 aa14.26□□□□□ -0.13
RFC1-207ENST00000504554 SAMD1Q6SPF0 538 aaPredicted RBP14.26□□□□□ -0.13
RFC1-207ENST00000504554 ABCB7O75027 752 aa14.25□□□□□ -0.13
RFC1-207ENST00000504554 TARBP1Q13395 1621 aaKnown RBP14.24□□□□□ -0.13
RFC1-207ENST00000504554 AQRO60306 1485 aaKnown RBP eCLIP14.23□□□□□ -0.133e-7■■■■□ 26.1
RFC1-207ENST00000504554 FGD5Q6ZNL6 1462 aa14.23□□□□□ -0.13
RFC1-207ENST00000504554 SOGA1O94964 1423 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms