RNA–Protein interactions for RNA: ENST00000279027.8

SLC13A3-201, Transcript of solute carrier family 13 member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SLC13A3, Length 4,017 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLC13A3-201ENST00000279027 NISCHQ9Y2I1 1504 aa23.48■■□□□ 1.35
SLC13A3-201ENST00000279027 DCAF8L2P0C7V8 631 aa21.25■□□□□ 0.99
SLC13A3-201ENST00000279027 SHROOM4Q9ULL8 1493 aa21.15■□□□□ 0.98
SLC13A3-201ENST00000279027 SUPT5HO00267 1087 aaKnown RBP20.87■□□□□ 0.93
SLC13A3-201ENST00000279027 EHMT2Q96KQ7 1210 aa19.7■□□□□ 0.74
SLC13A3-201ENST00000279027 ZCCHC6Q5VYS8 1495 aaKnown RBP19.68■□□□□ 0.74
SLC13A3-201ENST00000279027 CHIC1Q5VXU3 224 aa19.6■□□□□ 0.73
SLC13A3-201ENST00000279027 CCDC180Q9P1Z9 1646 aa19.49■□□□□ 0.71
SLC13A3-201ENST00000279027 FAM9AQ8IZU1 332 aaPredicted RBP19.48■□□□□ 0.71
SLC13A3-201ENST00000279027 PCGF6Q9BYE7 350 aa19.43■□□□□ 0.7
SLC13A3-201ENST00000279027 LOC105371045A0A1W2PR82 267 aa19.39■□□□□ 0.7
SLC13A3-201ENST00000279027 ABCC9O60706 1549 aa19.32■□□□□ 0.68
SLC13A3-201ENST00000279027 TRIM41Q8WV44 630 aa19.21■□□□□ 0.67
SLC13A3-201ENST00000279027 MYO15BQ96JP2 1530 aa19.13■□□□□ 0.65
SLC13A3-201ENST00000279027 SCRIBQ14160 1630 aa19.05■□□□□ 0.64
SLC13A3-201ENST00000279027 PPARGC1BQ86YN6 1023 aaKnown RBP18.97■□□□□ 0.63
SLC13A3-201ENST00000279027 TTBK1Q5TCY1 1321 aaPredicted RBP18.96■□□□□ 0.63
SLC13A3-201ENST00000279027 HRCP23327 699 aa18.86■□□□□ 0.61
SLC13A3-201ENST00000279027 PABPN1Q86U42 306 aaKnown RBP eCLIP18.84■□□□□ 0.61
SLC13A3-201ENST00000279027 DCAF1Q9Y4B6 1507 aa18.78■□□□□ 0.6
SLC13A3-201ENST00000279027 RSF1Q96T23 1441 aaPredicted RBP18.74■□□□□ 0.59
SLC13A3-201ENST00000279027 TRIM26Q12899 539 aaPredicted RBP18.68■□□□□ 0.58
SLC13A3-201ENST00000279027 RANGAP1P46060 587 aaPredicted RBP18.67■□□□□ 0.58
SLC13A3-201ENST00000279027 CECR2Q9BXF3 1484 aa18.62■□□□□ 0.57
SLC13A3-201ENST00000279027 UBTFP17480 764 aaKnown RBP18.55■□□□□ 0.56
SLC13A3-201ENST00000279027 RB1CC1Q8TDY2 1594 aa18.45■□□□□ 0.54
SLC13A3-201ENST00000279027 NACADO15069 1562 aa18.4■□□□□ 0.54
SLC13A3-201ENST00000279027 MROH2BQ7Z745 1585 aa18.39■□□□□ 0.53
SLC13A3-201ENST00000279027 CCER1Q8TC90 406 aaPredicted RBP18.37■□□□□ 0.53
SLC13A3-201ENST00000279027 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.32■□□□□ 0.52
SLC13A3-201ENST00000279027 ZEB1P37275 1124 aaPredicted RBP18.23■□□□□ 0.51
SLC13A3-201ENST00000279027 APLP2Q06481 763 aa18.23■□□□□ 0.51
SLC13A3-201ENST00000279027 WIZO95785 1651 aa18.23■□□□□ 0.51
SLC13A3-201ENST00000279027 CSRNP3Q8WYN3 585 aa18.12■□□□□ 0.49
SLC13A3-201ENST00000279027 HNRNPUL2Q1KMD3 747 aaKnown RBP18.11■□□□□ 0.49
SLC13A3-201ENST00000279027 BAZ1AQ9NRL2 1556 aaPredicted RBP18.07■□□□□ 0.48
SLC13A3-201ENST00000279027 ABCC8Q09428 1581 aa18.04■□□□□ 0.48
SLC13A3-201ENST00000279027 CCDC88BA6NC98 1476 aa18■□□□□ 0.47
SLC13A3-201ENST00000279027 ATP1B4Q9UN42 357 aaPredicted RBP17.98■□□□□ 0.47
SLC13A3-201ENST00000279027 SOGA1O94964 1423 aa17.97■□□□□ 0.47
SLC13A3-201ENST00000279027 ITGAEP38570 1179 aa17.91■□□□□ 0.46
SLC13A3-201ENST00000279027 CEP162Q5TB80 1403 aa17.83■□□□□ 0.44
SLC13A3-201ENST00000279027 RUSC2Q8N2Y8 1516 aa17.82■□□□□ 0.44
SLC13A3-201ENST00000279027 SMARCA4P51532 1647 aa17.82■□□□□ 0.44
SLC13A3-201ENST00000279027 WRNQ14191 1432 aaPredicted RBP eCLIP17.81■□□□□ 0.44
SLC13A3-201ENST00000279027 YTHDC1Q96MU7 727 aaKnown RBP17.81■□□□□ 0.44
SLC13A3-201ENST00000279027 TOP2AP11388 1531 aaKnown RBP17.8■□□□□ 0.44
SLC13A3-201ENST00000279027 BAZ1BQ9UIG0 1483 aaKnown RBP17.76■□□□□ 0.43
SLC13A3-201ENST00000279027 DIEXFQ68CQ4 756 aaKnown RBP17.72■□□□□ 0.43
SLC13A3-201ENST00000279027 SMARCA2P51531 1590 aa17.7■□□□□ 0.42
SLC13A3-201ENST00000279027 P3H3Q8IVL6 736 aa17.69■□□□□ 0.42
SLC13A3-201ENST00000279027 TNIKQ9UKE5 1360 aa17.68■□□□□ 0.42
SLC13A3-201ENST00000279027 CLIP1P30622 1438 aa17.63■□□□□ 0.41
SLC13A3-201ENST00000279027 GOLGA3Q08378 1498 aa17.63■□□□□ 0.41
SLC13A3-201ENST00000279027 ATAD2BQ9ULI0 1458 aa17.6■□□□□ 0.41
SLC13A3-201ENST00000279027 EEA1Q15075 1411 aa17.57■□□□□ 0.4
SLC13A3-201ENST00000279027 CENPBP07199 599 aaPredicted RBP17.56■□□□□ 0.4
SLC13A3-201ENST00000279027 BICRAQ9NZM4 1560 aa17.51■□□□□ 0.39
SLC13A3-201ENST00000279027 FAM50AQ14320 339 aaKnown RBP17.5■□□□□ 0.39
SLC13A3-201ENST00000279027 UNC13AQ9UPW8 1703 aa17.5■□□□□ 0.39
SLC13A3-201ENST00000279027 CEP164Q9UPV0 1460 aa17.5■□□□□ 0.39
SLC13A3-201ENST00000279027 ZNF316A6NFI3 1004 aaPredicted RBP17.47■□□□□ 0.39
SLC13A3-201ENST00000279027 RAPGEF2Q9Y4G8 1499 aa17.45■□□□□ 0.38
SLC13A3-201ENST00000279027 KANK4Q5T7N3 995 aaPredicted RBP17.4■□□□□ 0.38
SLC13A3-201ENST00000279027 ARID3CA6NKF2 412 aa17.39■□□□□ 0.38
SLC13A3-201ENST00000279027 SCAF1Q9H7N4 1312 aaKnown RBP17.39■□□□□ 0.37
SLC13A3-201ENST00000279027 NEUROD1Q13562 356 aa17.38■□□□□ 0.37
SLC13A3-201ENST00000279027 SYNJ1O43426 1573 aa17.38■□□□□ 0.37
SLC13A3-201ENST00000279027 GTF3C3Q9Y5Q9 886 aa17.36■□□□□ 0.37
SLC13A3-201ENST00000279027 KIF27Q86VH2 1401 aa17.33■□□□□ 0.36
SLC13A3-201ENST00000279027 ACIN1Q9UKV3 1341 aaKnown RBP17.32■□□□□ 0.36
SLC13A3-201ENST00000279027 VPS8Q8N3P4 1428 aa17.31■□□□□ 0.36
SLC13A3-201ENST00000279027 EIF4G1Q04637 1599 aaKnown RBP17.3■□□□□ 0.36
SLC13A3-201ENST00000279027 MIER1Q8N108 512 aa17.28■□□□□ 0.36
SLC13A3-201ENST00000279027 CUX2O14529 1486 aa17.27■□□□□ 0.35
SLC13A3-201ENST00000279027 CARMIL1Q5VZK9 1371 aa17.17■□□□□ 0.34
SLC13A3-201ENST00000279027 HIRIP3Q9BW71 556 aaPredicted RBP17.16■□□□□ 0.34
SLC13A3-201ENST00000279027 NCAPD3P42695 1498 aa17.14■□□□□ 0.33
SLC13A3-201ENST00000279027 CADPSQ9ULU8 1353 aa17.14■□□□□ 0.33
SLC13A3-201ENST00000279027 FBLN2P98095 1184 aa17.12■□□□□ 0.33
SLC13A3-201ENST00000279027 KIF21BO75037 1637 aa17.1■□□□□ 0.33
SLC13A3-201ENST00000279027 CNGB1Q14028 1251 aaPredicted RBP17.09■□□□□ 0.33
SLC13A3-201ENST00000279027 TRIM52Q96A61 297 aa17.08■□□□□ 0.33
SLC13A3-201ENST00000279027 PEG3Q9GZU2 1588 aa17.08■□□□□ 0.32
SLC13A3-201ENST00000279027 CHIC2Q9UKJ5 165 aa17.08■□□□□ 0.32
SLC13A3-201ENST00000279027 SIN3AQ96ST3 1273 aa17.08■□□□□ 0.32
SLC13A3-201ENST00000279027 CUX1P39880 1505 aa17.07■□□□□ 0.32
SLC13A3-201ENST00000279027 TDRD9Q8NDG6 1382 aaKnown RBP17.06■□□□□ 0.32
SLC13A3-201ENST00000279027 DNAJC5BQ9UF47 199 aa17.06■□□□□ 0.32
SLC13A3-201ENST00000279027 IGF1RP08069 1367 aa17.05■□□□□ 0.32
SLC13A3-201ENST00000279027 CCNB3Q8WWL7 1395 aa17.05■□□□□ 0.32
SLC13A3-201ENST00000279027 ARAP1Q96P48 1450 aa17.03■□□□□ 0.32
SLC13A3-201ENST00000279027 TOP2BQ02880 1626 aa17.03■□□□□ 0.32
SLC13A3-201ENST00000279027 CFTRP13569 1480 aa17.01■□□□□ 0.31
SLC13A3-201ENST00000279027 DDX10Q13206 875 aaKnown RBP17.01■□□□□ 0.31
SLC13A3-201ENST00000279027 RAD54L2Q9Y4B4 1467 aa17■□□□□ 0.31
SLC13A3-201ENST00000279027 FGD5Q6ZNL6 1462 aa16.99■□□□□ 0.31
SLC13A3-201ENST00000279027 PRXQ9BXM0 1461 aa16.98■□□□□ 0.31
SLC13A3-201ENST00000279027 MTUS2Q5JR59 1369 aa16.98■□□□□ 0.31
SLC13A3-201ENST00000279027 FHOD3Q2V2M9 1422 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms