Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 GTPBP2-208ENST00000476510 2816 ntTSL 512.31□□□□□ -0.448e-25■□□□□ 8.7
DDX55Q8NHQ9 ASXL1-204ENST00000470145 1073 ntTSL 511.78□□□□□ -0.526e-7■□□□□ 8.7
DDX55Q8NHQ9 PSMD4-206ENST00000453615 371 ntTSL 310.62□□□□□ -0.716e-7■□□□□ 8.7
DDX55Q8NHQ9 TNPO3-203ENST00000471234 3283 ntTSL 1 (best) BASIC10.03□□□□□ -0.86e-7■□□□□ 8.7
DDX55Q8NHQ9 TNPO3-204ENST00000482320 3585 ntTSL 1 (best) BASIC8.94□□□□□ -0.986e-7■□□□□ 8.7
DDX55Q8NHQ9 GTPBP2-210ENST00000496137 516 ntTSL 38.2□□□□□ -1.18e-25■□□□□ 8.7
DDX55Q8NHQ9 STOM-202ENST00000347359 870 ntTSL 2 BASIC20.56■□□□□ 0.885e-30■□□□□ 8.7
DDX55Q8NHQ9 AL356299.2-201ENST00000609218 586 ntTSL 4 BASIC13.25□□□□□ -0.291e-10■□□□□ 8.7
DDX55Q8NHQ9 RNASE4-201ENST00000397995 853 ntAPPRIS P1 TSL 2 BASIC10.27□□□□□ -0.771e-10■□□□□ 8.7
DDX55Q8NHQ9 TRAM2-201ENST00000182527 6908 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.167e-12■□□□□ 8.7
DDX55Q8NHQ9 TM9SF4-201ENST00000217315 4032 ntTSL 2 BASIC12.81□□□□□ -0.361e-16■□□□□ 8.7
DDX55Q8NHQ9 TM9SF4-207ENST00000495749 3023 ntTSL 29.74□□□□□ -0.851e-16■□□□□ 8.7
DDX55Q8NHQ9 TM9SF4-202ENST00000398022 3978 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.351e-16■□□□□ 8.7
DDX55Q8NHQ9 PKP3-203ENST00000525642 495 ntTSL 220.84■□□□□ 0.931e-11■□□□□ 8.7
DDX55Q8NHQ9 ACY1-226ENST00000637746 685 ntTSL 219.21■□□□□ 0.675e-7■□□□□ 8.7
DDX55Q8NHQ9 ACY1-218ENST00000637034 745 ntTSL 319.21■□□□□ 0.675e-7■□□□□ 8.7
DDX55Q8NHQ9 ACY1-220ENST00000637149 386 ntTSL 315.33■□□□□ 0.045e-7■□□□□ 8.7
DDX55Q8NHQ9 SRRM1-201ENST00000323848 4011 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.11e-12■□□□□ 8.7
DDX55Q8NHQ9 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC5.39□□□□□ -1.551e-12■□□□□ 8.7
DDX55Q8NHQ9 SLC2A4RG-202ENST00000473157 991 ntTSL 322.02■■□□□ 1.122e-7■□□□□ 8.7
DDX55Q8NHQ9 AC024592.3-203ENST00000585661 431 ntAPPRIS P1 TSL 220.7■□□□□ 0.95e-11■□□□□ 8.7
DDX55Q8NHQ9 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC20.7■□□□□ 0.95e-11■□□□□ 8.7
DDX55Q8NHQ9 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.815e-11■□□□□ 8.7
DDX55Q8NHQ9 NDUFA11-204ENST00000591341 403 ntTSL 219.99■□□□□ 0.791e-10■□□□□ 8.7
DDX55Q8NHQ9 NDUFA11-206ENST00000593233 657 ntTSL 319.99■□□□□ 0.795e-11■□□□□ 8.7
DDX55Q8NHQ9 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC18.59■□□□□ 0.575e-11■□□□□ 8.7
DDX55Q8NHQ9 AC024592.3-201ENST00000592091 2118 ntTSL 218.4■□□□□ 0.545e-11■□□□□ 8.7
DDX55Q8NHQ9 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC16.7■□□□□ 0.265e-11■□□□□ 8.7
DDX55Q8NHQ9 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC18.81■□□□□ 0.61e-31■□□□□ 8.6
DDX55Q8NHQ9 NCSTN-212ENST00000469159 856 ntTSL 210.35□□□□□ -0.753e-14■□□□□ 8.6
DDX55Q8NHQ9 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC20.85■□□□□ 0.933e-30■□□□□ 8.6
DDX55Q8NHQ9 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.233e-30■□□□□ 8.6
DDX55Q8NHQ9 FADS1-211ENST00000536991 2701 ntTSL 2 BASIC10.13□□□□□ -0.793e-30■□□□□ 8.6
DDX55Q8NHQ9 APOC3-204ENST00000470144 269 ntTSL 516.51■□□□□ 0.231e-29■□□□□ 8.6
DDX55Q8NHQ9 APOC3-203ENST00000433777 359 ntTSL 512.9□□□□□ -0.341e-29■□□□□ 8.6
DDX55Q8NHQ9 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.222e-10■□□□□ 8.6
DDX55Q8NHQ9 IRAK1-208ENST00000444230 1125 ntTSL 521.48■■□□□ 1.035e-15■□□□□ 8.6
DDX55Q8NHQ9 TRMT2A-212ENST00000471040 848 ntTSL 321.25■□□□□ 0.992e-10■□□□□ 8.6
DDX55Q8NHQ9 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.155e-15■□□□□ 8.6
DDX55Q8NHQ9 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC15.94■□□□□ 0.142e-10■□□□□ 8.6
DDX55Q8NHQ9 TRIT1-202ENST00000372818 2034 ntTSL 1 (best) BASIC15.11■□□□□ 0.012e-10■□□□□ 8.6
DDX55Q8NHQ9 TRIT1-201ENST00000316891 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.062e-10■□□□□ 8.6
DDX55Q8NHQ9 TRIT1-215ENST00000541099 545 ntTSL 1 (best) BASIC14.14□□□□□ -0.152e-10■□□□□ 8.6
DDX55Q8NHQ9 PDHA1-212ENST00000540249 3277 ntTSL 2 BASIC13.96□□□□□ -0.182e-10■□□□□ 8.6
DDX55Q8NHQ9 IRAK1-202ENST00000369974 3319 ntTSL 1 (best) BASIC13.93□□□□□ -0.185e-15■□□□□ 8.6
DDX55Q8NHQ9 TRIT1-205ENST00000462797 2000 ntTSL 513.88□□□□□ -0.192e-10■□□□□ 8.6
DDX55Q8NHQ9 UFC1-201ENST00000368003 1114 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.222e-10■□□□□ 8.6
DDX55Q8NHQ9 PDHA1-206ENST00000422285 3310 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.232e-10■□□□□ 8.6
DDX55Q8NHQ9 PDHA1-208ENST00000478795 791 ntTSL 213.44□□□□□ -0.262e-10■□□□□ 8.6
DDX55Q8NHQ9 UFC1-206ENST00000483191 617 ntTSL 213.4□□□□□ -0.262e-10■□□□□ 8.6
DDX55Q8NHQ9 TRIT1-213ENST00000495175 1156 ntTSL 1 (best)13.35□□□□□ -0.272e-10■□□□□ 8.6
DDX55Q8NHQ9 PDHA1-213ENST00000545074 3391 ntAPPRIS ALT1 TSL 2 BASIC13.14□□□□□ -0.312e-10■□□□□ 8.6
DDX55Q8NHQ9 PDHA1-204ENST00000379806 3484 ntTSL 1 (best) BASIC11.95□□□□□ -0.52e-10■□□□□ 8.6
DDX55Q8NHQ9 TRIT1-211ENST00000491865 738 ntTSL 511.82□□□□□ -0.522e-10■□□□□ 8.6
DDX55Q8NHQ9 YPEL5-203ENST00000379520 2560 ntAPPRIS P1 TSL 2 BASIC11.6□□□□□ -0.552e-10■□□□□ 8.6
DDX55Q8NHQ9 TRIT1-203ENST00000441669 1851 ntTSL 1 (best) BASIC11.59□□□□□ -0.552e-10■□□□□ 8.6
DDX55Q8NHQ9 UQCRC2-201ENST00000268379 2615 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.62e-10■□□□□ 8.6
DDX55Q8NHQ9 YPEL5-210ENST00000495673 935 ntTSL 1 (best)11.1□□□□□ -0.632e-10■□□□□ 8.6
DDX55Q8NHQ9 PDHA1-202ENST00000379804 709 ntTSL 2 BASIC9.72□□□□□ -0.852e-10■□□□□ 8.6
DDX55Q8NHQ9 YPEL5-201ENST00000261353 2182 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.272e-10■□□□□ 8.6
DDX55Q8NHQ9 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC6.95□□□□□ -1.32e-10■□□□□ 8.6
DDX55Q8NHQ9 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC6.1□□□□□ -1.432e-10■□□□□ 8.6
DDX55Q8NHQ9 TRIT1-206ENST00000465417 499 ntTSL 55.45□□□□□ -1.542e-10■□□□□ 8.6
DDX55Q8NHQ9 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.787e-8■□□□□ 8.6
DDX55Q8NHQ9 B3GAT3-203ENST00000532585 1534 ntTSL 1 (best)22.62■■□□□ 1.217e-8■□□□□ 8.6
DDX55Q8NHQ9 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC21.5■■□□□ 1.037e-8■□□□□ 8.6
DDX55Q8NHQ9 DDX39B-210ENST00000431908 914 ntTSL 514.78□□□□□ -0.042e-16■□□□□ 8.6
DDX55Q8NHQ9 LDHA-215ENST00000537296 1511 ntTSL 213.23□□□□□ -0.292e-16■□□□□ 8.6
DDX55Q8NHQ9 DDX39B-220ENST00000482195 1232 ntTSL 212.97□□□□□ -0.332e-16■□□□□ 8.6
DDX55Q8NHQ9 LDHA-207ENST00000460405 680 ntTSL 312.57□□□□□ -0.42e-16■□□□□ 8.6
DDX55Q8NHQ9 LDHA-222ENST00000543695 554 ntTSL 512.57□□□□□ -0.42e-16■□□□□ 8.6
DDX55Q8NHQ9 DDX39B-219ENST00000481456 5158 ntTSL 212.53□□□□□ -0.42e-16■□□□□ 8.6
DDX55Q8NHQ9 LDHA-210ENST00000486690 664 ntTSL 59.19□□□□□ -0.942e-16■□□□□ 8.6
DDX55Q8NHQ9 LDHA-214ENST00000536528 516 ntTSL 38.34□□□□□ -1.072e-16■□□□□ 8.6
DDX55Q8NHQ9 DDX39B-207ENST00000427214 1005 ntTSL 58.23□□□□□ -1.092e-16■□□□□ 8.6
DDX55Q8NHQ9 EBP-203ENST00000446158 714 ntTSL 521.47■■□□□ 1.037e-33■□□□□ 8.6
DDX55Q8NHQ9 EBP-202ENST00000414061 609 ntTSL 317.19■□□□□ 0.347e-33■□□□□ 8.6
DDX55Q8NHQ9 DCXR-205ENST00000577996 98 ntTSL 3-1.96□□□□□ -2.721e-6■□□□□ 8.6
DDX55Q8NHQ9 MLF2-203ENST00000536207 582 ntTSL 315.3■□□□□ 0.041e-6■□□□□ 8.6
DDX55Q8NHQ9 MLF2-207ENST00000540710 458 ntTSL 314.54□□□□□ -0.081e-6■□□□□ 8.6
DDX55Q8NHQ9 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.335e-10■□□□□ 8.6
DDX55Q8NHQ9 NDRG1-217ENST00000521414 2349 ntTSL 215.72■□□□□ 0.115e-10■□□□□ 8.6
DDX55Q8NHQ9 NDRG1-204ENST00000517599 2918 ntTSL 212.86□□□□□ -0.355e-10■□□□□ 8.6
DDX55Q8NHQ9 NDRG1-229ENST00000537882 2975 ntTSL 2 BASIC12.06□□□□□ -0.485e-10■□□□□ 8.6
DDX55Q8NHQ9 NDRG1-201ENST00000323851 3014 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.495e-10■□□□□ 8.6
DDX55Q8NHQ9 NDRG1-212ENST00000519278 3983 ntTSL 210.33□□□□□ -0.765e-10■□□□□ 8.6
DDX55Q8NHQ9 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC22.07■■□□□ 1.124e-23■□□□□ 8.6
DDX55Q8NHQ9 MFGE8-214ENST00000560937 801 ntTSL 221.49■■□□□ 1.034e-23■□□□□ 8.6
DDX55Q8NHQ9 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC23.54■■□□□ 1.365e-8■□□□□ 8.6
DDX55Q8NHQ9 NDUFS7-211ENST00000539882 555 ntTSL 420.01■□□□□ 0.792e-18■□□□□ 8.6
DDX55Q8NHQ9 ID1-201ENST00000376105 1233 ntBASIC26.45■■□□□ 1.822e-6■□□□□ 8.6
DDX55Q8NHQ9 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.352e-6■□□□□ 8.6
DDX55Q8NHQ9 SLC2A4RG-208ENST00000496425 502 ntTSL 221.6■■□□□ 1.053e-7■□□□□ 8.6
DDX55Q8NHQ9 RNA5SP150-201ENST00000362969 119 ntBASIC12.41□□□□□ -0.423e-68■□□□□ 8.6
DDX55Q8NHQ9 GAS5-204ENST00000421068 1060 ntTSL 25.91□□□□□ -1.466e-37■□□□□ 8.6
DDX55Q8NHQ9 GAS5-229ENST00000458220 469 ntTSL 23.79□□□□□ -1.86e-37■□□□□ 8.6
DDX55Q8NHQ9 LIME1-204ENST00000476183 809 ntAPPRIS ALT2 TSL 525.96■■□□□ 1.751e-7■□□□□ 8.6
DDX55Q8NHQ9 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC23.67■■□□□ 1.381e-7■□□□□ 8.6
DDX55Q8NHQ9 MT-TM-201ENST00000387377 68 ntBASIC-2.95□□□□□ -2.881e-323■□□□□ 8.6
DDX55Q8NHQ9 CORO1C-214ENST00000550542 1245 ntTSL 522.51■■□□□ 1.199e-14■□□□□ 8.6
Retrieved 100 of 15,504 protein–RNA pairs in 302.5 ms