RNA–Protein interactions for RNA: ENST00000476183.2

LIME1-204, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 5

Gene LIME1, Length 809 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-204ENST00000476183 NISCHQ9Y2I1 1504 aa52.05■■■■■ 5.92
LIME1-204ENST00000476183 CCDC180Q9P1Z9 1646 aa46.36■■■■■ 5.01
LIME1-204ENST00000476183 ABCC9O60706 1549 aa45.72■■■■■ 4.91
LIME1-204ENST00000476183 RB1CC1Q8TDY2 1594 aa43.79■■■■■ 4.6
LIME1-204ENST00000476183 NACADO15069 1562 aa43.67■■■■■ 4.58
LIME1-204ENST00000476183 DCAF8L2P0C7V8 631 aa43.6■■■■■ 4.57
LIME1-204ENST00000476183 MYO15BQ96JP2 1530 aa43.3■■■■■ 4.52
LIME1-204ENST00000476183 ZCCHC6Q5VYS8 1495 aaKnown RBP43.3■■■■■ 4.52
LIME1-204ENST00000476183 DCAF1Q9Y4B6 1507 aa43.02■■■■■ 4.48
LIME1-204ENST00000476183 UNC13AQ9UPW8 1703 aa42.85■■■■■ 4.45
LIME1-204ENST00000476183 PABPN1Q86U42 306 aaKnown RBP eCLIP42.69■■■■■ 4.423e-9■■■■□ 25
LIME1-204ENST00000476183 BICRAQ9NZM4 1560 aa42.55■■■■■ 4.4
LIME1-204ENST00000476183 SCRIBQ14160 1630 aa42.34■■■■■ 4.37
LIME1-204ENST00000476183 DNAJC5BQ9UF47 199 aa42.3■■■■■ 4.36
LIME1-204ENST00000476183 SHROOM4Q9ULL8 1493 aa41.96■■■■■ 4.31
LIME1-204ENST00000476183 EIF4G1Q04637 1599 aaKnown RBP41.42■■■■■ 4.22
LIME1-204ENST00000476183 CC2D2AQ9P2K1 1620 aa41.33■■■■■ 4.21
LIME1-204ENST00000476183 CECR2Q9BXF3 1484 aa41.09■■■■■ 4.17
LIME1-204ENST00000476183 SMARCA4P51532 1647 aa40.45■■■■■ 4.07
LIME1-204ENST00000476183 BAZ1AQ9NRL2 1556 aaPredicted RBP40.33■■■■■ 4.05
LIME1-204ENST00000476183 NCAPD3P42695 1498 aa40.32■■■■■ 4.04
LIME1-204ENST00000476183 ATAD2BQ9ULI0 1458 aa40.32■■■■■ 4.04
LIME1-204ENST00000476183 SMARCA2P51531 1590 aa40.2■■■■■ 4.03
LIME1-204ENST00000476183 MROH2BQ7Z745 1585 aa40.14■■■■■ 4.02
LIME1-204ENST00000476183 HMGXB3Q12766 1538 aa40.08■■■■■ 4.01
LIME1-204ENST00000476183 PEG3Q9GZU2 1588 aa40.05■■■■■ 4
LIME1-204ENST00000476183 BAZ1BQ9UIG0 1483 aaKnown RBP39.94■■■■□ 3.98
LIME1-204ENST00000476183 WIZO95785 1651 aa39.69■■■■□ 3.94
LIME1-204ENST00000476183 RSF1Q96T23 1441 aaPredicted RBP39.56■■■■□ 3.92
LIME1-204ENST00000476183 NESP48681 1621 aa39.5■■■■□ 3.91
LIME1-204ENST00000476183 ERCC6Q03468 1493 aa39.37■■■■□ 3.89
LIME1-204ENST00000476183 LAMC3Q9Y6N6 1575 aa39.28■■■■□ 3.88
LIME1-204ENST00000476183 TOP2AP11388 1531 aaKnown RBP39.21■■■■□ 3.87
LIME1-204ENST00000476183 CADPSQ9ULU8 1353 aa39.13■■■■□ 3.85
LIME1-204ENST00000476183 CUX2O14529 1486 aa39.06■■■■□ 3.84
LIME1-204ENST00000476183 PDS5BQ9NTI5 1447 aa39.02■■■■□ 3.84
LIME1-204ENST00000476183 KIF21AQ7Z4S6 1674 aa39■■■■□ 3.83
LIME1-204ENST00000476183 THOC2Q8NI27 1593 aaKnown RBP38.94■■■■□ 3.82
LIME1-204ENST00000476183 CFTRP13569 1480 aa38.84■■■■□ 3.81
LIME1-204ENST00000476183 CCDC88BA6NC98 1476 aa38.79■■■■□ 3.8
LIME1-204ENST00000476183 FANCD2Q9BXW9 1451 aa38.68■■■■□ 3.78
LIME1-204ENST00000476183 MRC2Q9UBG0 1479 aa38.66■■■■□ 3.78
LIME1-204ENST00000476183 CEP164Q9UPV0 1460 aa38.64■■■■□ 3.78
LIME1-204ENST00000476183 WDR62O43379 1518 aa38.56■■■■□ 3.76
LIME1-204ENST00000476183 PRDM2Q13029 1718 aa38.49■■■■□ 3.75
LIME1-204ENST00000476183 URB2Q14146 1524 aaKnown RBP38.35■■■■□ 3.73
LIME1-204ENST00000476183 SUPT5HO00267 1087 aaKnown RBP38.32■■■■□ 3.72
LIME1-204ENST00000476183 DNAJC5Q9H3Z4 198 aa38.26■■■■□ 3.72
LIME1-204ENST00000476183 TOPBP1Q92547 1522 aa38.04■■■■□ 3.68
LIME1-204ENST00000476183 DNMBPQ6XZF7 1577 aa37.96■■■■□ 3.67
LIME1-204ENST00000476183 ABCC8Q09428 1581 aa37.95■■■■□ 3.67
LIME1-204ENST00000476183 IFT140Q96RY7 1462 aa37.85■■■■□ 3.65
LIME1-204ENST00000476183 ZNF608Q9ULD9 1512 aaPredicted RBP37.77■■■■□ 3.64
LIME1-204ENST00000476183 POLA1P09884 1462 aaPredicted RBP37.71■■■■□ 3.63
LIME1-204ENST00000476183 CUX1P39880 1505 aa37.66■■■■□ 3.62
LIME1-204ENST00000476183 TARBP1Q13395 1621 aaKnown RBP37.66■■■■□ 3.62
LIME1-204ENST00000476183 RAD54L2Q9Y4B4 1467 aa37.58■■■■□ 3.61
LIME1-204ENST00000476183 EIF4G3O43432 1585 aaKnown RBP37.57■■■■□ 3.6
LIME1-204ENST00000476183 FGD5Q6ZNL6 1462 aa37.57■■■■□ 3.6
LIME1-204ENST00000476183 SOGA1O94964 1423 aa37.53■■■■□ 3.6
LIME1-204ENST00000476183 AQRO60306 1485 aaKnown RBP eCLIP37.51■■■■□ 3.596e-6■■■■□ 25.1
LIME1-204ENST00000476183 OSCARQ8IYS5 282 aa37.4■■■■□ 3.58
LIME1-204ENST00000476183 TDRD9Q8NDG6 1382 aaKnown RBP37.38■■■■□ 3.57
LIME1-204ENST00000476183 WDR97A6NE52 1622 aa37.28■■■■□ 3.56
LIME1-204ENST00000476183 WRNQ14191 1432 aaPredicted RBP eCLIP37.27■■■■□ 3.56
LIME1-204ENST00000476183 SYNJ1O43426 1573 aa37.25■■■■□ 3.55
LIME1-204ENST00000476183 TOP2BQ02880 1626 aa37.23■■■■□ 3.55
LIME1-204ENST00000476183 BIVM-ERCC5R4GMW8 1640 aa37.23■■■■□ 3.55
LIME1-204ENST00000476183 ABCA10Q8WWZ4 1543 aa37.18■■■■□ 3.54
LIME1-204ENST00000476183 CHD1O14646 1710 aa37.16■■■■□ 3.54
LIME1-204ENST00000476183 SNAPC4Q5SXM2 1469 aa37.13■■■■□ 3.54
LIME1-204ENST00000476183 GRIN2BQ13224 1484 aa37.11■■■■□ 3.53
LIME1-204ENST00000476183 GAPVD1Q14C86 1478 aa37.09■■■■□ 3.53
LIME1-204ENST00000476183 FBLN2P98095 1184 aa37.07■■■■□ 3.52
LIME1-204ENST00000476183 ABCA5Q8WWZ7 1642 aa37.07■■■■□ 3.52
LIME1-204ENST00000476183 MAGI1Q96QZ7 1491 aaPredicted RBP37.04■■■■□ 3.52
LIME1-204ENST00000476183 PBRM1Q86U86 1689 aa37.03■■■■□ 3.52
LIME1-204ENST00000476183 SYNJ2O15056 1496 aa36.91■■■■□ 3.5
LIME1-204ENST00000476183 CHMP7Q8WUX9 453 aaPredicted RBP36.91■■■■□ 3.5
LIME1-204ENST00000476183 TRIM41Q8WV44 630 aa36.88■■■■□ 3.49
LIME1-204ENST00000476183 RIMBP3CA6NJZ7 1639 aa36.88■■■■□ 3.49
LIME1-204ENST00000476183 RIMBP3BA6NNM3 1639 aa36.88■■■■□ 3.49
LIME1-204ENST00000476183 RIMBP3Q9UFD9 1639 aa36.88■■■■□ 3.49
LIME1-204ENST00000476183 ARHGEF11O15085 1522 aa36.83■■■■□ 3.49
LIME1-204ENST00000476183 CLASP1Q7Z460 1538 aa36.75■■■■□ 3.47
LIME1-204ENST00000476183 ADAMTS12P58397 1594 aa36.74■■■■□ 3.47
LIME1-204ENST00000476183 ERICH3Q5RHP9 1530 aa36.71■■■■□ 3.47
LIME1-204ENST00000476183 GRIN2AQ12879 1464 aa36.65■■■■□ 3.46
LIME1-204ENST00000476183 FHAD1B1AJZ9 1412 aa36.64■■■■□ 3.46
LIME1-204ENST00000476183 ARAP1Q96P48 1450 aa36.53■■■■□ 3.44
LIME1-204ENST00000476183 NUP160Q12769 1436 aa36.51■■■■□ 3.44
LIME1-204ENST00000476183 CEP170Q5SW79 1584 aa36.51■■■■□ 3.44
LIME1-204ENST00000476183 CYB5RLQ6IPT4 315 aa36.5■■■■□ 3.43
LIME1-204ENST00000476183 KIF27Q86VH2 1401 aa36.5■■■■□ 3.43
LIME1-204ENST00000476183 IGF1RP08069 1367 aa36.44■■■■□ 3.42
LIME1-204ENST00000476183 CUL7Q14999 1698 aa36.3■■■■□ 3.4
LIME1-204ENST00000476183 ERCC6L2Q5T890 1561 aa36.27■■■■□ 3.4
LIME1-204ENST00000476183 SHROOM2Q13796 1616 aa36.26■■■■□ 3.4
LIME1-204ENST00000476183 CARMIL1Q5VZK9 1371 aa36.2■■■■□ 3.39
LIME1-204ENST00000476183 RUSC2Q8N2Y8 1516 aa36.19■■■■□ 3.38
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms