RNA–Protein interactions for RNA: ENST00000217315.9

TM9SF4-201, Transcript of transmembrane 9 superfamily member 4, humanhuman

TSL 2 BASIC

Gene TM9SF4, Length 4,032 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4-201ENST00000217315 NISCHQ9Y2I1 1504 aa23.63■■□□□ 1.37
TM9SF4-201ENST00000217315 DCAF8L2P0C7V8 631 aa21.77■■□□□ 1.08
TM9SF4-201ENST00000217315 SHROOM4Q9ULL8 1493 aa21.43■■□□□ 1.02
TM9SF4-201ENST00000217315 SUPT5HO00267 1087 aaKnown RBP21.34■■□□□ 1.01
TM9SF4-201ENST00000217315 EHMT2Q96KQ7 1210 aa20.09■□□□□ 0.81
TM9SF4-201ENST00000217315 PCGF6Q9BYE7 350 aa19.95■□□□□ 0.78
TM9SF4-201ENST00000217315 FAM9AQ8IZU1 332 aaPredicted RBP19.92■□□□□ 0.78
TM9SF4-201ENST00000217315 CHIC1Q5VXU3 224 aa19.92■□□□□ 0.78
TM9SF4-201ENST00000217315 ZCCHC6Q5VYS8 1495 aaKnown RBP19.78■□□□□ 0.76
TM9SF4-201ENST00000217315 TRIM41Q8WV44 630 aa19.74■□□□□ 0.75
TM9SF4-201ENST00000217315 LOC105371045A0A1W2PR82 267 aa19.65■□□□□ 0.74
TM9SF4-201ENST00000217315 CCDC180Q9P1Z9 1646 aa19.58■□□□□ 0.73
TM9SF4-201ENST00000217315 ABCC9O60706 1549 aa19.44■□□□□ 0.7
TM9SF4-201ENST00000217315 TTBK1Q5TCY1 1321 aaPredicted RBP19.39■□□□□ 0.69
TM9SF4-201ENST00000217315 HRCP23327 699 aa19.38■□□□□ 0.69
TM9SF4-201ENST00000217315 TRIM26Q12899 539 aaPredicted RBP19.27■□□□□ 0.67
TM9SF4-201ENST00000217315 PPARGC1BQ86YN6 1023 aaKnown RBP19.27■□□□□ 0.67
TM9SF4-201ENST00000217315 SCRIBQ14160 1630 aa19.13■□□□□ 0.65
TM9SF4-201ENST00000217315 UBTFP17480 764 aaKnown RBP19.13■□□□□ 0.65
TM9SF4-201ENST00000217315 MYO15BQ96JP2 1530 aa19.11■□□□□ 0.65
TM9SF4-201ENST00000217315 RANGAP1P46060 587 aaPredicted RBP19.1■□□□□ 0.65
TM9SF4-201ENST00000217315 ZEB1P37275 1124 aaPredicted RBP19.09■□□□□ 0.65
TM9SF4-201ENST00000217315 APLP2Q06481 763 aa19.08■□□□□ 0.64
TM9SF4-201ENST00000217315 CCER1Q8TC90 406 aaPredicted RBP19.04■□□□□ 0.64
TM9SF4-201ENST00000217315 PABPN1Q86U42 306 aaKnown RBP eCLIP19.01■□□□□ 0.63
TM9SF4-201ENST00000217315 DCAF1Q9Y4B6 1507 aa18.93■□□□□ 0.62
TM9SF4-201ENST00000217315 RSF1Q96T23 1441 aaPredicted RBP18.88■□□□□ 0.61
TM9SF4-201ENST00000217315 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.72■□□□□ 0.59
TM9SF4-201ENST00000217315 CECR2Q9BXF3 1484 aa18.61■□□□□ 0.57
TM9SF4-201ENST00000217315 NACADO15069 1562 aa18.6■□□□□ 0.57
TM9SF4-201ENST00000217315 HNRNPUL2Q1KMD3 747 aaKnown RBP18.59■□□□□ 0.57
TM9SF4-201ENST00000217315 ATP1B4Q9UN42 357 aaPredicted RBP18.57■□□□□ 0.56
TM9SF4-201ENST00000217315 CSRNP3Q8WYN3 585 aa18.53■□□□□ 0.56
TM9SF4-201ENST00000217315 RB1CC1Q8TDY2 1594 aa18.49■□□□□ 0.55
TM9SF4-201ENST00000217315 CENPBP07199 599 aaPredicted RBP18.48■□□□□ 0.55
TM9SF4-201ENST00000217315 MROH2BQ7Z745 1585 aa18.41■□□□□ 0.54
TM9SF4-201ENST00000217315 YTHDC1Q96MU7 727 aaKnown RBP18.4■□□□□ 0.54
TM9SF4-201ENST00000217315 ITGAEP38570 1179 aa18.4■□□□□ 0.54
TM9SF4-201ENST00000217315 DIEXFQ68CQ4 756 aaKnown RBP18.31■□□□□ 0.52
TM9SF4-201ENST00000217315 BAZ1AQ9NRL2 1556 aaPredicted RBP18.29■□□□□ 0.52
TM9SF4-201ENST00000217315 WIZO95785 1651 aa18.2■□□□□ 0.5
TM9SF4-201ENST00000217315 CEP162Q5TB80 1403 aa18.14■□□□□ 0.49
TM9SF4-201ENST00000217315 WRNQ14191 1432 aaPredicted RBP eCLIP18.11■□□□□ 0.49
TM9SF4-201ENST00000217315 CCDC88BA6NC98 1476 aa18.11■□□□□ 0.49
TM9SF4-201ENST00000217315 SOGA1O94964 1423 aa18.1■□□□□ 0.49
TM9SF4-201ENST00000217315 ABCC8Q09428 1581 aa18.08■□□□□ 0.49
TM9SF4-201ENST00000217315 PELP1Q8IZL8 1130 aaKnown RBP18.07■□□□□ 0.48
TM9SF4-201ENST00000217315 EEA1Q15075 1411 aa18.04■□□□□ 0.48
TM9SF4-201ENST00000217315 ZNF316A6NFI3 1004 aaPredicted RBP18.04■□□□□ 0.48
TM9SF4-201ENST00000217315 TNIKQ9UKE5 1360 aa18.03■□□□□ 0.48
TM9SF4-201ENST00000217315 FAM50AQ14320 339 aaKnown RBP18.03■□□□□ 0.48
TM9SF4-201ENST00000217315 BAZ1BQ9UIG0 1483 aaKnown RBP18.01■□□□□ 0.47
TM9SF4-201ENST00000217315 CLIP1P30622 1438 aa18.01■□□□□ 0.47
TM9SF4-201ENST00000217315 P3H3Q8IVL6 736 aa18.01■□□□□ 0.47
TM9SF4-201ENST00000217315 GOLGA3Q08378 1498 aa18■□□□□ 0.47
TM9SF4-201ENST00000217315 TOP2AP11388 1531 aaKnown RBP17.95■□□□□ 0.46
TM9SF4-201ENST00000217315 GTF3C3Q9Y5Q9 886 aa17.91■□□□□ 0.46
TM9SF4-201ENST00000217315 NEUROD1Q13562 356 aa17.88■□□□□ 0.45
TM9SF4-201ENST00000217315 ACIN1Q9UKV3 1341 aaKnown RBP17.88■□□□□ 0.45
TM9SF4-201ENST00000217315 SMARCA4P51532 1647 aa17.88■□□□□ 0.45
TM9SF4-201ENST00000217315 CEP164Q9UPV0 1460 aa17.87■□□□□ 0.45
TM9SF4-201ENST00000217315 RUSC2Q8N2Y8 1516 aa17.81■□□□□ 0.44
TM9SF4-201ENST00000217315 SCAF1Q9H7N4 1312 aaKnown RBP17.76■□□□□ 0.43
TM9SF4-201ENST00000217315 SMARCA2P51531 1590 aa17.73■□□□□ 0.43
TM9SF4-201ENST00000217315 ATAD2BQ9ULI0 1458 aa17.71■□□□□ 0.43
TM9SF4-201ENST00000217315 KIF27Q86VH2 1401 aa17.71■□□□□ 0.43
TM9SF4-201ENST00000217315 NEFLP07196 543 aa17.7■□□□□ 0.42
TM9SF4-201ENST00000217315 ARID3CA6NKF2 412 aa17.7■□□□□ 0.42
TM9SF4-201ENST00000217315 MIER1Q8N108 512 aa17.67■□□□□ 0.42
TM9SF4-201ENST00000217315 TRIM52Q96A61 297 aa17.66■□□□□ 0.42
TM9SF4-201ENST00000217315 VPS8Q8N3P4 1428 aa17.64■□□□□ 0.41
TM9SF4-201ENST00000217315 POLR3GLQ9BT43 218 aa17.6■□□□□ 0.41
TM9SF4-201ENST00000217315 CNGB1Q14028 1251 aaPredicted RBP17.59■□□□□ 0.41
TM9SF4-201ENST00000217315 RAPGEF2Q9Y4G8 1499 aa17.59■□□□□ 0.41
TM9SF4-201ENST00000217315 KANK4Q5T7N3 995 aaPredicted RBP17.58■□□□□ 0.41
TM9SF4-201ENST00000217315 FBLN2P98095 1184 aa17.56■□□□□ 0.4
TM9SF4-201ENST00000217315 CUX2O14529 1486 aa17.54■□□□□ 0.4
TM9SF4-201ENST00000217315 DDX10Q13206 875 aaKnown RBP17.49■□□□□ 0.39
TM9SF4-201ENST00000217315 CARMIL1Q5VZK9 1371 aa17.49■□□□□ 0.39
TM9SF4-201ENST00000217315 ANP32CO43423 234 aa17.48■□□□□ 0.39
TM9SF4-201ENST00000217315 MTUS2Q5JR59 1369 aa17.46■□□□□ 0.39
TM9SF4-201ENST00000217315 BCANQ96GW7 911 aa17.45■□□□□ 0.38
TM9SF4-201ENST00000217315 CHIC2Q9UKJ5 165 aa17.45■□□□□ 0.38
TM9SF4-201ENST00000217315 HIRIP3Q9BW71 556 aaPredicted RBP17.44■□□□□ 0.38
TM9SF4-201ENST00000217315 CCNB3Q8WWL7 1395 aa17.44■□□□□ 0.38
TM9SF4-201ENST00000217315 TONSLQ96HA7 1378 aa17.42■□□□□ 0.38
TM9SF4-201ENST00000217315 ZNF326Q5BKZ1 582 aaKnown RBP17.39■□□□□ 0.37
TM9SF4-201ENST00000217315 SYNJ1O43426 1573 aa17.38■□□□□ 0.37
TM9SF4-201ENST00000217315 SIN3AQ96ST3 1273 aa17.37■□□□□ 0.37
TM9SF4-201ENST00000217315 CLSPNQ9HAW4 1339 aa17.37■□□□□ 0.37
TM9SF4-201ENST00000217315 ZNF777Q9ULD5 760 aaPredicted RBP17.37■□□□□ 0.37
TM9SF4-201ENST00000217315 CADPSQ9ULU8 1353 aa17.37■□□□□ 0.37
TM9SF4-201ENST00000217315 BICRAQ9NZM4 1560 aa17.35■□□□□ 0.37
TM9SF4-201ENST00000217315 RRP7BPQ9NSQ0 103 aa17.33■□□□□ 0.36
TM9SF4-201ENST00000217315 ERICH6Q7L0X2 663 aa17.31■□□□□ 0.36
TM9SF4-201ENST00000217315 CDK11AQ9UQ88 783 aaPredicted RBP17.31■□□□□ 0.36
TM9SF4-201ENST00000217315 FHAD1B1AJZ9 1412 aa17.3■□□□□ 0.36
TM9SF4-201ENST00000217315 MYT1LQ9UL68 1186 aa17.3■□□□□ 0.36
TM9SF4-201ENST00000217315 NCAPD3P42695 1498 aa17.29■□□□□ 0.36
TM9SF4-201ENST00000217315 TDRD9Q8NDG6 1382 aaKnown RBP17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms