RNA–Protein interactions for RNA: ENST00000495749.1

TM9SF4-207, Transcript of transmembrane 9 superfamily member 4, humanhuman

TSL 2

Gene TM9SF4, Length 3,023 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4-207ENST00000495749 NISCHQ9Y2I1 1504 aa18.88■□□□□ 0.61
TM9SF4-207ENST00000495749 SHROOM4Q9ULL8 1493 aa16.49■□□□□ 0.23
TM9SF4-207ENST00000495749 DCAF8L2P0C7V8 631 aa16.48■□□□□ 0.23
TM9SF4-207ENST00000495749 CCDC180Q9P1Z9 1646 aa16.26■□□□□ 0.19
TM9SF4-207ENST00000495749 SUPT5HO00267 1087 aaKnown RBP16.09■□□□□ 0.17
TM9SF4-207ENST00000495749 ZCCHC6Q5VYS8 1495 aaKnown RBP15.85■□□□□ 0.13
TM9SF4-207ENST00000495749 ABCC9O60706 1549 aa15.65■□□□□ 0.1
TM9SF4-207ENST00000495749 CHIC1Q5VXU3 224 aa15.26■□□□□ 0.03
TM9SF4-207ENST00000495749 SCRIBQ14160 1630 aa15.26■□□□□ 0.03
TM9SF4-207ENST00000495749 DCAF1Q9Y4B6 1507 aa15.23■□□□□ 0.03
TM9SF4-207ENST00000495749 MYO15BQ96JP2 1530 aa15.21■□□□□ 0.03
TM9SF4-207ENST00000495749 NACADO15069 1562 aa15.21■□□□□ 0.03
TM9SF4-207ENST00000495749 RB1CC1Q8TDY2 1594 aa15.18■□□□□ 0.02
TM9SF4-207ENST00000495749 EHMT2Q96KQ7 1210 aa15.06■□□□□ 0
TM9SF4-207ENST00000495749 LOC105371045A0A1W2PR82 267 aa15.03■□□□□ -0
TM9SF4-207ENST00000495749 PABPN1Q86U42 306 aaKnown RBP eCLIP15.01□□□□□ -0.01
TM9SF4-207ENST00000495749 RSF1Q96T23 1441 aaPredicted RBP14.97□□□□□ -0.01
TM9SF4-207ENST00000495749 FAM9AQ8IZU1 332 aaPredicted RBP14.97□□□□□ -0.01
TM9SF4-207ENST00000495749 CECR2Q9BXF3 1484 aa14.96□□□□□ -0.01
TM9SF4-207ENST00000495749 HRCP23327 699 aa14.93□□□□□ -0.02
TM9SF4-207ENST00000495749 UNC13AQ9UPW8 1703 aa14.92□□□□□ -0.02
TM9SF4-207ENST00000495749 PCGF6Q9BYE7 350 aa14.88□□□□□ -0.03
TM9SF4-207ENST00000495749 TRIM41Q8WV44 630 aa14.84□□□□□ -0.03
TM9SF4-207ENST00000495749 MROH2BQ7Z745 1585 aa14.78□□□□□ -0.04
TM9SF4-207ENST00000495749 BICRAQ9NZM4 1560 aa14.76□□□□□ -0.05
TM9SF4-207ENST00000495749 PPARGC1BQ86YN6 1023 aaKnown RBP14.68□□□□□ -0.06
TM9SF4-207ENST00000495749 WIZO95785 1651 aa14.65□□□□□ -0.06
TM9SF4-207ENST00000495749 DNAJC5BQ9UF47 199 aa14.55□□□□□ -0.08
TM9SF4-207ENST00000495749 BAZ1AQ9NRL2 1556 aaPredicted RBP14.48□□□□□ -0.09
TM9SF4-207ENST00000495749 TRIM26Q12899 539 aaPredicted RBP14.48□□□□□ -0.09
TM9SF4-207ENST00000495749 TTBK1Q5TCY1 1321 aaPredicted RBP14.44□□□□□ -0.1
TM9SF4-207ENST00000495749 CCDC88BA6NC98 1476 aa14.4□□□□□ -0.1
TM9SF4-207ENST00000495749 SMARCA4P51532 1647 aa14.38□□□□□ -0.11
TM9SF4-207ENST00000495749 ABCC8Q09428 1581 aa14.36□□□□□ -0.11
TM9SF4-207ENST00000495749 EIF4G1Q04637 1599 aaKnown RBP14.33□□□□□ -0.12
TM9SF4-207ENST00000495749 RANGAP1P46060 587 aaPredicted RBP14.33□□□□□ -0.12
TM9SF4-207ENST00000495749 TOP2AP11388 1531 aaKnown RBP14.28□□□□□ -0.12
TM9SF4-207ENST00000495749 UBTFP17480 764 aaKnown RBP14.26□□□□□ -0.13
TM9SF4-207ENST00000495749 SMARCA2P51531 1590 aa14.24□□□□□ -0.13
TM9SF4-207ENST00000495749 SOGA1O94964 1423 aa14.24□□□□□ -0.13
TM9SF4-207ENST00000495749 CC2D2AQ9P2K1 1620 aa14.23□□□□□ -0.13
TM9SF4-207ENST00000495749 ZEB1P37275 1124 aaPredicted RBP14.21□□□□□ -0.13
TM9SF4-207ENST00000495749 ATAD2BQ9ULI0 1458 aa14.19□□□□□ -0.14
TM9SF4-207ENST00000495749 RUSC2Q8N2Y8 1516 aa14.19□□□□□ -0.14
TM9SF4-207ENST00000495749 BAZ1BQ9UIG0 1483 aaKnown RBP14.18□□□□□ -0.14
TM9SF4-207ENST00000495749 CSRNP3Q8WYN3 585 aa14.15□□□□□ -0.14
TM9SF4-207ENST00000495749 WRNQ14191 1432 aaPredicted RBP eCLIP14.1□□□□□ -0.15
TM9SF4-207ENST00000495749 PEG3Q9GZU2 1588 aa14.07□□□□□ -0.16
TM9SF4-207ENST00000495749 DNAJC5Q9H3Z4 198 aa14.02□□□□□ -0.17
TM9SF4-207ENST00000495749 NCAPD3P42695 1498 aa14.01□□□□□ -0.17
TM9SF4-207ENST00000495749 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14□□□□□ -0.17
TM9SF4-207ENST00000495749 HMGXB3Q12766 1538 aa13.99□□□□□ -0.17
TM9SF4-207ENST00000495749 CEP162Q5TB80 1403 aa13.96□□□□□ -0.17
TM9SF4-207ENST00000495749 SYNJ1O43426 1573 aa13.95□□□□□ -0.18
TM9SF4-207ENST00000495749 CCER1Q8TC90 406 aaPredicted RBP13.9□□□□□ -0.18
TM9SF4-207ENST00000495749 SCAF1Q9H7N4 1312 aaKnown RBP13.9□□□□□ -0.18
TM9SF4-207ENST00000495749 TNIKQ9UKE5 1360 aa13.88□□□□□ -0.19
TM9SF4-207ENST00000495749 HNRNPUL2Q1KMD3 747 aaKnown RBP13.85□□□□□ -0.19
TM9SF4-207ENST00000495749 RAPGEF2Q9Y4G8 1499 aa13.83□□□□□ -0.2
TM9SF4-207ENST00000495749 GOLGA3Q08378 1498 aa13.83□□□□□ -0.2
TM9SF4-207ENST00000495749 APLP2Q06481 763 aa13.82□□□□□ -0.2
TM9SF4-207ENST00000495749 EEA1Q15075 1411 aa13.81□□□□□ -0.2
TM9SF4-207ENST00000495749 CLIP1P30622 1438 aa13.78□□□□□ -0.2
TM9SF4-207ENST00000495749 P3H3Q8IVL6 736 aa13.77□□□□□ -0.21
TM9SF4-207ENST00000495749 CEP164Q9UPV0 1460 aa13.76□□□□□ -0.21
TM9SF4-207ENST00000495749 ATP1B4Q9UN42 357 aaPredicted RBP13.75□□□□□ -0.21
TM9SF4-207ENST00000495749 PELP1Q8IZL8 1130 aaKnown RBP13.74□□□□□ -0.21
TM9SF4-207ENST00000495749 CADPSQ9ULU8 1353 aa13.74□□□□□ -0.21
TM9SF4-207ENST00000495749 CUX1P39880 1505 aa13.73□□□□□ -0.21
TM9SF4-207ENST00000495749 CFTRP13569 1480 aa13.73□□□□□ -0.21
TM9SF4-207ENST00000495749 NESP48681 1621 aa13.71□□□□□ -0.21
TM9SF4-207ENST00000495749 DIEXFQ68CQ4 756 aaKnown RBP13.71□□□□□ -0.22
TM9SF4-207ENST00000495749 ITGAEP38570 1179 aa13.69□□□□□ -0.22
TM9SF4-207ENST00000495749 NEUROD1Q13562 356 aa13.69□□□□□ -0.22
TM9SF4-207ENST00000495749 ACIN1Q9UKV3 1341 aaKnown RBP13.69□□□□□ -0.22
TM9SF4-207ENST00000495749 TOP2BQ02880 1626 aa13.67□□□□□ -0.22
TM9SF4-207ENST00000495749 CUX2O14529 1486 aa13.67□□□□□ -0.22
TM9SF4-207ENST00000495749 KIF27Q86VH2 1401 aa13.67□□□□□ -0.22
TM9SF4-207ENST00000495749 KANK4Q5T7N3 995 aaPredicted RBP13.66□□□□□ -0.22
TM9SF4-207ENST00000495749 LAMC3Q9Y6N6 1575 aa13.64□□□□□ -0.23
TM9SF4-207ENST00000495749 RAD54L2Q9Y4B4 1467 aa13.61□□□□□ -0.23
TM9SF4-207ENST00000495749 IGF1RP08069 1367 aa13.6□□□□□ -0.23
TM9SF4-207ENST00000495749 FANCD2Q9BXW9 1451 aa13.6□□□□□ -0.23
TM9SF4-207ENST00000495749 CENPBP07199 599 aaPredicted RBP13.59□□□□□ -0.23
TM9SF4-207ENST00000495749 VPS8Q8N3P4 1428 aa13.59□□□□□ -0.23
TM9SF4-207ENST00000495749 FGD5Q6ZNL6 1462 aa13.59□□□□□ -0.23
TM9SF4-207ENST00000495749 GTF3C3Q9Y5Q9 886 aa13.58□□□□□ -0.24
TM9SF4-207ENST00000495749 PRXQ9BXM0 1461 aa13.57□□□□□ -0.24
TM9SF4-207ENST00000495749 CARMIL1Q5VZK9 1371 aa13.57□□□□□ -0.24
TM9SF4-207ENST00000495749 KIF21BO75037 1637 aa13.57□□□□□ -0.24
TM9SF4-207ENST00000495749 TDRD9Q8NDG6 1382 aaKnown RBP13.56□□□□□ -0.24
TM9SF4-207ENST00000495749 PRDM2Q13029 1718 aa13.56□□□□□ -0.24
TM9SF4-207ENST00000495749 BIVM-ERCC5R4GMW8 1640 aa13.53□□□□□ -0.24
TM9SF4-207ENST00000495749 ZNF316A6NFI3 1004 aaPredicted RBP13.53□□□□□ -0.24
TM9SF4-207ENST00000495749 ARAP1Q96P48 1450 aa13.52□□□□□ -0.24
TM9SF4-207ENST00000495749 KIF21AQ7Z4S6 1674 aa13.51□□□□□ -0.25
TM9SF4-207ENST00000495749 ARID3CA6NKF2 412 aa13.51□□□□□ -0.25
TM9SF4-207ENST00000495749 PDS5BQ9NTI5 1447 aa13.47□□□□□ -0.25
TM9SF4-207ENST00000495749 YTHDC1Q96MU7 727 aaKnown RBP13.47□□□□□ -0.25
TM9SF4-207ENST00000495749 THOC2Q8NI27 1593 aaKnown RBP13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 193.2 ms