RNA–Protein interactions for RNA: ENST00000525642.1

PKP3-203, Transcript of plakophilin 3, humanhuman

TSL 2

Gene PKP3, Length 495 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP3-203ENST00000525642 NISCHQ9Y2I1 1504 aa41.89■■■■■ 4.3
PKP3-203ENST00000525642 CCDC180Q9P1Z9 1646 aa37.19■■■■□ 3.54
PKP3-203ENST00000525642 ABCC9O60706 1549 aa36.14■■■■□ 3.38
PKP3-203ENST00000525642 ZCCHC6Q5VYS8 1495 aaKnown RBP34.93■■■■□ 3.18
PKP3-203ENST00000525642 NACADO15069 1562 aa34.92■■■■□ 3.18
PKP3-203ENST00000525642 RB1CC1Q8TDY2 1594 aa34.89■■■■□ 3.18
PKP3-203ENST00000525642 MYO15BQ96JP2 1530 aa34.86■■■■□ 3.17
PKP3-203ENST00000525642 DCAF1Q9Y4B6 1507 aa34.75■■■■□ 3.15
PKP3-203ENST00000525642 DCAF8L2P0C7V8 631 aa34.7■■■■□ 3.15
PKP3-203ENST00000525642 UNC13AQ9UPW8 1703 aa34.14■■■■□ 3.06
PKP3-203ENST00000525642 BICRAQ9NZM4 1560 aa33.9■■■■□ 3.02
PKP3-203ENST00000525642 SCRIBQ14160 1630 aa33.82■■■■□ 3.01
PKP3-203ENST00000525642 PABPN1Q86U42 306 aaKnown RBP eCLIP33.77■■■■□ 3
PKP3-203ENST00000525642 SHROOM4Q9ULL8 1493 aa33.58■■■□□ 2.97
PKP3-203ENST00000525642 DNAJC5BQ9UF47 199 aa33.14■■■□□ 2.9
PKP3-203ENST00000525642 EIF4G1Q04637 1599 aaKnown RBP32.95■■■□□ 2.86
PKP3-203ENST00000525642 CC2D2AQ9P2K1 1620 aa32.76■■■□□ 2.83
PKP3-203ENST00000525642 CECR2Q9BXF3 1484 aa32.59■■■□□ 2.81
PKP3-203ENST00000525642 SMARCA4P51532 1647 aa32.45■■■□□ 2.79
PKP3-203ENST00000525642 BAZ1AQ9NRL2 1556 aaPredicted RBP32.43■■■□□ 2.78
PKP3-203ENST00000525642 NCAPD3P42695 1498 aa32.26■■■□□ 2.75
PKP3-203ENST00000525642 ATAD2BQ9ULI0 1458 aa32.26■■■□□ 2.75
PKP3-203ENST00000525642 MROH2BQ7Z745 1585 aa32.26■■■□□ 2.75
PKP3-203ENST00000525642 PEG3Q9GZU2 1588 aa32.22■■■□□ 2.75
PKP3-203ENST00000525642 SMARCA2P51531 1590 aa32.2■■■□□ 2.75
PKP3-203ENST00000525642 HMGXB3Q12766 1538 aa32.1■■■□□ 2.73
PKP3-203ENST00000525642 RSF1Q96T23 1441 aaPredicted RBP31.95■■■□□ 2.71
PKP3-203ENST00000525642 BAZ1BQ9UIG0 1483 aaKnown RBP31.93■■■□□ 2.7
PKP3-203ENST00000525642 WIZO95785 1651 aa31.89■■■□□ 2.7
PKP3-203ENST00000525642 TOP2AP11388 1531 aaKnown RBP31.59■■■□□ 2.65
PKP3-203ENST00000525642 NESP48681 1621 aa31.35■■■□□ 2.61
PKP3-203ENST00000525642 LAMC3Q9Y6N6 1575 aa31.34■■■□□ 2.61
PKP3-203ENST00000525642 CADPSQ9ULU8 1353 aa31.28■■■□□ 2.6
PKP3-203ENST00000525642 CCDC88BA6NC98 1476 aa31.21■■■□□ 2.59
PKP3-203ENST00000525642 CFTRP13569 1480 aa31.15■■■□□ 2.58
PKP3-203ENST00000525642 ERCC6Q03468 1493 aa31.09■■■□□ 2.57
PKP3-203ENST00000525642 PDS5BQ9NTI5 1447 aa31.09■■■□□ 2.57
PKP3-203ENST00000525642 SUPT5HO00267 1087 aaKnown RBP31.06■■■□□ 2.56
PKP3-203ENST00000525642 KIF21AQ7Z4S6 1674 aa30.99■■■□□ 2.55
PKP3-203ENST00000525642 PRDM2Q13029 1718 aa30.9■■■□□ 2.54
PKP3-203ENST00000525642 THOC2Q8NI27 1593 aaKnown RBP30.9■■■□□ 2.54
PKP3-203ENST00000525642 FANCD2Q9BXW9 1451 aa30.88■■■□□ 2.53
PKP3-203ENST00000525642 CUX2O14529 1486 aa30.85■■■□□ 2.53
PKP3-203ENST00000525642 CEP164Q9UPV0 1460 aa30.82■■■□□ 2.52
PKP3-203ENST00000525642 MRC2Q9UBG0 1479 aa30.76■■■□□ 2.52
PKP3-203ENST00000525642 WDR62O43379 1518 aa30.7■■■□□ 2.51
PKP3-203ENST00000525642 URB2Q14146 1524 aaKnown RBP30.59■■■□□ 2.49
PKP3-203ENST00000525642 ABCC8Q09428 1581 aa30.45■■■□□ 2.46
PKP3-203ENST00000525642 TOPBP1Q92547 1522 aa30.42■■■□□ 2.46
PKP3-203ENST00000525642 DNMBPQ6XZF7 1577 aa30.41■■■□□ 2.46
PKP3-203ENST00000525642 CUX1P39880 1505 aa30.25■■■□□ 2.43
PKP3-203ENST00000525642 IFT140Q96RY7 1462 aa30.19■■■□□ 2.42
PKP3-203ENST00000525642 POLA1P09884 1462 aaPredicted RBP30.18■■■□□ 2.42
PKP3-203ENST00000525642 TARBP1Q13395 1621 aaKnown RBP30.12■■■□□ 2.41
PKP3-203ENST00000525642 FGD5Q6ZNL6 1462 aa30.1■■■□□ 2.41
PKP3-203ENST00000525642 WRNQ14191 1432 aaPredicted RBP eCLIP30.08■■■□□ 2.41
PKP3-203ENST00000525642 BIVM-ERCC5R4GMW8 1640 aa30.05■■■□□ 2.4
PKP3-203ENST00000525642 TOP2BQ02880 1626 aa30.04■■■□□ 2.4
PKP3-203ENST00000525642 ZNF608Q9ULD9 1512 aaPredicted RBP30.03■■■□□ 2.4
PKP3-203ENST00000525642 SOGA1O94964 1423 aa30.03■■■□□ 2.4
PKP3-203ENST00000525642 RAD54L2Q9Y4B4 1467 aa30.01■■■□□ 2.4
PKP3-203ENST00000525642 SYNJ1O43426 1573 aa30.01■■■□□ 2.39
PKP3-203ENST00000525642 EIF4G3O43432 1585 aaKnown RBP29.92■■■□□ 2.38
PKP3-203ENST00000525642 WDR97A6NE52 1622 aa29.92■■■□□ 2.38
PKP3-203ENST00000525642 AQRO60306 1485 aaKnown RBP eCLIP29.87■■■□□ 2.37
PKP3-203ENST00000525642 ABCA10Q8WWZ4 1543 aa29.86■■■□□ 2.37
PKP3-203ENST00000525642 TDRD9Q8NDG6 1382 aaKnown RBP29.81■■■□□ 2.36
PKP3-203ENST00000525642 DNAJC5Q9H3Z4 198 aa29.74■■■□□ 2.35
PKP3-203ENST00000525642 ABCA5Q8WWZ7 1642 aa29.73■■■□□ 2.35
PKP3-203ENST00000525642 GAPVD1Q14C86 1478 aa29.69■■■□□ 2.34
PKP3-203ENST00000525642 GRIN2BQ13224 1484 aa29.68■■■□□ 2.34
PKP3-203ENST00000525642 PBRM1Q86U86 1689 aa29.61■■■□□ 2.33
PKP3-203ENST00000525642 MAGI1Q96QZ7 1491 aaPredicted RBP29.6■■■□□ 2.33
PKP3-203ENST00000525642 SNAPC4Q5SXM2 1469 aa29.58■■■□□ 2.33
PKP3-203ENST00000525642 OSCARQ8IYS5 282 aa29.54■■■□□ 2.32
PKP3-203ENST00000525642 CHD1O14646 1710 aa29.51■■■□□ 2.31
PKP3-203ENST00000525642 ERICH3Q5RHP9 1530 aa29.5■■■□□ 2.31
PKP3-203ENST00000525642 SYNJ2O15056 1496 aa29.48■■■□□ 2.31
PKP3-203ENST00000525642 KIF27Q86VH2 1401 aa29.43■■■□□ 2.3
PKP3-203ENST00000525642 ADAMTS12P58397 1594 aa29.4■■■□□ 2.3
PKP3-203ENST00000525642 CHMP7Q8WUX9 453 aaPredicted RBP29.37■■■□□ 2.29
PKP3-203ENST00000525642 TRIM41Q8WV44 630 aa29.37■■■□□ 2.29
PKP3-203ENST00000525642 FHAD1B1AJZ9 1412 aa29.37■■■□□ 2.29
PKP3-203ENST00000525642 FBLN2P98095 1184 aa29.35■■■□□ 2.29
PKP3-203ENST00000525642 IGF1RP08069 1367 aa29.35■■■□□ 2.29
PKP3-203ENST00000525642 GRIN2AQ12879 1464 aa29.29■■■□□ 2.28
PKP3-203ENST00000525642 CLASP1Q7Z460 1538 aa29.26■■■□□ 2.27
PKP3-203ENST00000525642 CUL7Q14999 1698 aa29.24■■■□□ 2.27
PKP3-203ENST00000525642 RUSC2Q8N2Y8 1516 aa29.22■■■□□ 2.27
PKP3-203ENST00000525642 NUP160Q12769 1436 aa29.21■■■□□ 2.27
PKP3-203ENST00000525642 CHIC1Q5VXU3 224 aa29.19■■■□□ 2.26
PKP3-203ENST00000525642 CEP170Q5SW79 1584 aa29.15■■■□□ 2.26
PKP3-203ENST00000525642 CARMIL1Q5VZK9 1371 aa29.13■■■□□ 2.25
PKP3-203ENST00000525642 ARHGEF11O15085 1522 aa29.08■■■□□ 2.25
PKP3-203ENST00000525642 RIMBP3CA6NJZ7 1639 aa29.06■■■□□ 2.24
PKP3-203ENST00000525642 RIMBP3BA6NNM3 1639 aa29.06■■■□□ 2.24
PKP3-203ENST00000525642 RIMBP3Q9UFD9 1639 aa29.06■■■□□ 2.24
PKP3-203ENST00000525642 EEA1Q15075 1411 aa28.99■■■□□ 2.23
PKP3-203ENST00000525642 SHROOM2Q13796 1616 aa28.98■■■□□ 2.23
PKP3-203ENST00000525642 RAPGEF2Q9Y4G8 1499 aa28.97■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms