Protein–RNA interactions for Protein: Q9Y587

AP4S1, AP-4 complex subunit sigma-1, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4S1Q9Y587 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
AP4S1Q9Y587 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
AP4S1Q9Y587 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC16.65■□□□□ 0.26
AP4S1Q9Y587 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
AP4S1Q9Y587 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
AP4S1Q9Y587 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
AP4S1Q9Y587 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
AP4S1Q9Y587 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
AP4S1Q9Y587 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
AP4S1Q9Y587 AC133681.1-201ENST00000465482 601 ntBASIC16.65■□□□□ 0.26
AP4S1Q9Y587 FDX2-207ENST00000494368 584 ntTSL 4 BASIC16.65■□□□□ 0.26
AP4S1Q9Y587 MIR3180-4-201ENST00000582223 153 ntBASIC16.65■□□□□ 0.26
AP4S1Q9Y587 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
AP4S1Q9Y587 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
AP4S1Q9Y587 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC16.65■□□□□ 0.26
AP4S1Q9Y587 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
AP4S1Q9Y587 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
AP4S1Q9Y587 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
AP4S1Q9Y587 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
AP4S1Q9Y587 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
AP4S1Q9Y587 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC16.65■□□□□ 0.26
AP4S1Q9Y587 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
AP4S1Q9Y587 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
AP4S1Q9Y587 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
AP4S1Q9Y587 AC103702.1-201ENST00000548801 2630 ntBASIC16.65■□□□□ 0.26
AP4S1Q9Y587 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
AP4S1Q9Y587 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
AP4S1Q9Y587 AC096733.2-201ENST00000609937 1394 ntBASIC16.64■□□□□ 0.26
AP4S1Q9Y587 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
AP4S1Q9Y587 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
AP4S1Q9Y587 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
AP4S1Q9Y587 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
AP4S1Q9Y587 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
AP4S1Q9Y587 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC16.64■□□□□ 0.25
AP4S1Q9Y587 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
AP4S1Q9Y587 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
AP4S1Q9Y587 DDX43P3-201ENST00000441064 443 ntBASIC16.64■□□□□ 0.25
AP4S1Q9Y587 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC16.64■□□□□ 0.25
AP4S1Q9Y587 AP003097.1-201ENST00000530657 1135 ntBASIC16.64■□□□□ 0.25
AP4S1Q9Y587 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC16.64■□□□□ 0.25
AP4S1Q9Y587 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC16.64■□□□□ 0.25
AP4S1Q9Y587 MIR4674-201ENST00000582457 87 ntBASIC16.64■□□□□ 0.25
AP4S1Q9Y587 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC16.64■□□□□ 0.25
AP4S1Q9Y587 AL137784.2-201ENST00000607332 1000 ntBASIC16.64■□□□□ 0.25
AP4S1Q9Y587 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC16.64■□□□□ 0.25
AP4S1Q9Y587 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
AP4S1Q9Y587 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC16.64■□□□□ 0.25
AP4S1Q9Y587 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC16.64■□□□□ 0.25
AP4S1Q9Y587 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
AP4S1Q9Y587 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
AP4S1Q9Y587 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
AP4S1Q9Y587 LYSMD4-203ENST00000378904 2122 ntBASIC16.64■□□□□ 0.25
AP4S1Q9Y587 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC16.64■□□□□ 0.25
AP4S1Q9Y587 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
AP4S1Q9Y587 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
AP4S1Q9Y587 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
AP4S1Q9Y587 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC16.64■□□□□ 0.25
AP4S1Q9Y587 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
AP4S1Q9Y587 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
AP4S1Q9Y587 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
AP4S1Q9Y587 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
AP4S1Q9Y587 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
AP4S1Q9Y587 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
AP4S1Q9Y587 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC16.63■□□□□ 0.25
AP4S1Q9Y587 ANKRD26P3-201ENST00000454044 2748 ntBASIC16.63■□□□□ 0.25
AP4S1Q9Y587 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC16.63■□□□□ 0.25
AP4S1Q9Y587 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC16.63■□□□□ 0.25
AP4S1Q9Y587 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
AP4S1Q9Y587 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
AP4S1Q9Y587 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC16.63■□□□□ 0.25
AP4S1Q9Y587 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
AP4S1Q9Y587 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
AP4S1Q9Y587 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
AP4S1Q9Y587 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC16.63■□□□□ 0.25
AP4S1Q9Y587 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC16.63■□□□□ 0.25
AP4S1Q9Y587 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
AP4S1Q9Y587 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
AP4S1Q9Y587 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
AP4S1Q9Y587 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
AP4S1Q9Y587 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
AP4S1Q9Y587 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC16.63■□□□□ 0.25
AP4S1Q9Y587 AL353807.1-201ENST00000427475 662 ntBASIC16.63■□□□□ 0.25
AP4S1Q9Y587 MAP2K4P1-201ENST00000438453 1195 ntBASIC16.63■□□□□ 0.25
AP4S1Q9Y587 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC16.63■□□□□ 0.25
AP4S1Q9Y587 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC16.63■□□□□ 0.25
AP4S1Q9Y587 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC16.63■□□□□ 0.25
AP4S1Q9Y587 AC079328.2-201ENST00000561241 3354 ntBASIC16.63■□□□□ 0.25
AP4S1Q9Y587 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
AP4S1Q9Y587 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
AP4S1Q9Y587 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
AP4S1Q9Y587 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
AP4S1Q9Y587 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
AP4S1Q9Y587 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC16.63■□□□□ 0.25
AP4S1Q9Y587 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
AP4S1Q9Y587 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC16.63■□□□□ 0.25
AP4S1Q9Y587 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC16.63■□□□□ 0.25
AP4S1Q9Y587 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
AP4S1Q9Y587 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
AP4S1Q9Y587 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
AP4S1Q9Y587 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms