RNA–Protein interactions for RNA: ENST00000370110.5

NPM3-201, Transcript of nucleophosmin/nucleoplasmin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPM3, Length 877 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPM3-201ENST00000370110 NISCHQ9Y2I1 1504 aa46.27■■■■■ 5
NPM3-201ENST00000370110 ABCC9O60706 1549 aa41.81■■■■■ 4.28
NPM3-201ENST00000370110 CCDC180Q9P1Z9 1646 aa41.58■■■■■ 4.25
NPM3-201ENST00000370110 RB1CC1Q8TDY2 1594 aa39.64■■■■□ 3.94
NPM3-201ENST00000370110 DNAJC5BQ9UF47 199 aa39.43■■■■□ 3.9
NPM3-201ENST00000370110 NACADO15069 1562 aa39.33■■■■□ 3.89
NPM3-201ENST00000370110 DCAF8L2P0C7V8 631 aa39.07■■■■□ 3.85
NPM3-201ENST00000370110 PABPN1Q86U42 306 aaKnown RBP eCLIP38.89■■■■□ 3.82
NPM3-201ENST00000370110 UNC13AQ9UPW8 1703 aa38.85■■■■□ 3.81
NPM3-201ENST00000370110 MYO15BQ96JP2 1530 aa38.71■■■■□ 3.79
NPM3-201ENST00000370110 BICRAQ9NZM4 1560 aa38.6■■■■□ 3.77
NPM3-201ENST00000370110 ZCCHC6Q5VYS8 1495 aaKnown RBP38.33■■■■□ 3.73
NPM3-201ENST00000370110 DCAF1Q9Y4B6 1507 aa38.17■■■■□ 3.7
NPM3-201ENST00000370110 SCRIBQ14160 1630 aa37.94■■■■□ 3.66
NPM3-201ENST00000370110 SHROOM4Q9ULL8 1493 aa37.92■■■■□ 3.66
NPM3-201ENST00000370110 CC2D2AQ9P2K1 1620 aa37.75■■■■□ 3.63
NPM3-201ENST00000370110 CECR2Q9BXF3 1484 aa37.64■■■■□ 3.62
NPM3-201ENST00000370110 EIF4G1Q04637 1599 aaKnown RBP37.63■■■■□ 3.61
NPM3-201ENST00000370110 NCAPD3P42695 1498 aa36.33■■■■□ 3.41
NPM3-201ENST00000370110 DNAJC5Q9H3Z4 198 aa36.24■■■■□ 3.39
NPM3-201ENST00000370110 ATAD2BQ9ULI0 1458 aa36.22■■■■□ 3.39
NPM3-201ENST00000370110 SMARCA4P51532 1647 aa36.15■■■■□ 3.38
NPM3-201ENST00000370110 SMARCA2P51531 1590 aa36.06■■■■□ 3.36
NPM3-201ENST00000370110 HMGXB3Q12766 1538 aa36.04■■■■□ 3.36
NPM3-201ENST00000370110 CUX2O14529 1486 aa36.04■■■■□ 3.36
NPM3-201ENST00000370110 ERCC6Q03468 1493 aa36.04■■■■□ 3.36
NPM3-201ENST00000370110 NESP48681 1621 aa35.9■■■■□ 3.34
NPM3-201ENST00000370110 BAZ1AQ9NRL2 1556 aaPredicted RBP35.89■■■■□ 3.34
NPM3-201ENST00000370110 BAZ1BQ9UIG0 1483 aaKnown RBP35.84■■■■□ 3.33
NPM3-201ENST00000370110 PEG3Q9GZU2 1588 aa35.78■■■■□ 3.32
NPM3-201ENST00000370110 MROH2BQ7Z745 1585 aa35.69■■■■□ 3.3
NPM3-201ENST00000370110 THOC2Q8NI27 1593 aaKnown RBP35.55■■■■□ 3.28
NPM3-201ENST00000370110 LAMC3Q9Y6N6 1575 aa35.52■■■■□ 3.28
NPM3-201ENST00000370110 KIF21AQ7Z4S6 1674 aa35.4■■■■□ 3.26
NPM3-201ENST00000370110 PDS5BQ9NTI5 1447 aa35.29■■■■□ 3.24
NPM3-201ENST00000370110 WIZO95785 1651 aa35.26■■■■□ 3.23
NPM3-201ENST00000370110 CADPSQ9ULU8 1353 aa35.21■■■■□ 3.23
NPM3-201ENST00000370110 MRC2Q9UBG0 1479 aa35.05■■■■□ 3.2
NPM3-201ENST00000370110 WDR62O43379 1518 aa35■■■■□ 3.19
NPM3-201ENST00000370110 CEP164Q9UPV0 1460 aa34.87■■■■□ 3.17
NPM3-201ENST00000370110 RSF1Q96T23 1441 aaPredicted RBP34.86■■■■□ 3.17
NPM3-201ENST00000370110 FANCD2Q9BXW9 1451 aa34.84■■■■□ 3.17
NPM3-201ENST00000370110 CFTRP13569 1480 aa34.78■■■■□ 3.16
NPM3-201ENST00000370110 TOP2AP11388 1531 aaKnown RBP34.76■■■■□ 3.15
NPM3-201ENST00000370110 URB2Q14146 1524 aaKnown RBP34.6■■■■□ 3.13
NPM3-201ENST00000370110 TRIM41Q8WV44 630 aa34.59■■■■□ 3.13
NPM3-201ENST00000370110 PRDM2Q13029 1718 aa34.42■■■■□ 3.1
NPM3-201ENST00000370110 CCDC88BA6NC98 1476 aa34.38■■■■□ 3.09
NPM3-201ENST00000370110 OSCARQ8IYS5 282 aa34.32■■■■□ 3.08
NPM3-201ENST00000370110 ZNF608Q9ULD9 1512 aaPredicted RBP34.21■■■■□ 3.07
NPM3-201ENST00000370110 TOPBP1Q92547 1522 aa34.17■■■■□ 3.06
NPM3-201ENST00000370110 IFT140Q96RY7 1462 aa34.16■■■■□ 3.06
NPM3-201ENST00000370110 DNMBPQ6XZF7 1577 aa34.01■■■■□ 3.03
NPM3-201ENST00000370110 EIF4G3O43432 1585 aaKnown RBP34■■■■□ 3.03
NPM3-201ENST00000370110 RIMBP3CA6NJZ7 1639 aa34■■■■□ 3.03
NPM3-201ENST00000370110 RIMBP3BA6NNM3 1639 aa34■■■■□ 3.03
NPM3-201ENST00000370110 RIMBP3Q9UFD9 1639 aa34■■■■□ 3.03
NPM3-201ENST00000370110 ABCC8Q09428 1581 aa33.98■■■■□ 3.03
NPM3-201ENST00000370110 TARBP1Q13395 1621 aaKnown RBP33.9■■■■□ 3.02
NPM3-201ENST00000370110 ARHGEF11O15085 1522 aa33.87■■■■□ 3.01
NPM3-201ENST00000370110 AQRO60306 1485 aaKnown RBP eCLIP33.85■■■■□ 3.01
NPM3-201ENST00000370110 SUPT5HO00267 1087 aaKnown RBP33.83■■■■□ 3.01
NPM3-201ENST00000370110 POLA1P09884 1462 aaPredicted RBP33.81■■■■□ 3
NPM3-201ENST00000370110 CHD1O14646 1710 aa33.79■■■■□ 3
NPM3-201ENST00000370110 RAD54L2Q9Y4B4 1467 aa33.72■■■□□ 2.99
NPM3-201ENST00000370110 TDRD9Q8NDG6 1382 aaKnown RBP33.61■■■□□ 2.97
NPM3-201ENST00000370110 SOGA1O94964 1423 aa33.61■■■□□ 2.97
NPM3-201ENST00000370110 FBLN2P98095 1184 aa33.59■■■□□ 2.97
NPM3-201ENST00000370110 FGD5Q6ZNL6 1462 aa33.58■■■□□ 2.97
NPM3-201ENST00000370110 CYB5RLQ6IPT4 315 aa33.58■■■□□ 2.97
NPM3-201ENST00000370110 ARAP1Q96P48 1450 aa33.55■■■□□ 2.96
NPM3-201ENST00000370110 CUX1P39880 1505 aa33.54■■■□□ 2.96
NPM3-201ENST00000370110 SNAPC4Q5SXM2 1469 aa33.5■■■□□ 2.95
NPM3-201ENST00000370110 WDR97A6NE52 1622 aa33.44■■■□□ 2.94
NPM3-201ENST00000370110 CLASP1Q7Z460 1538 aa33.39■■■□□ 2.94
NPM3-201ENST00000370110 MAGI1Q96QZ7 1491 aaPredicted RBP33.35■■■□□ 2.93
NPM3-201ENST00000370110 GRIN2BQ13224 1484 aa33.34■■■□□ 2.93
NPM3-201ENST00000370110 CHMP7Q8WUX9 453 aaPredicted RBP33.29■■■□□ 2.92
NPM3-201ENST00000370110 SYNJ1O43426 1573 aa33.29■■■□□ 2.92
NPM3-201ENST00000370110 SYNJ2O15056 1496 aa33.25■■■□□ 2.91
NPM3-201ENST00000370110 PBRM1Q86U86 1689 aa33.24■■■□□ 2.91
NPM3-201ENST00000370110 TRHP20396 242 aaPredicted RBP33.24■■■□□ 2.91
NPM3-201ENST00000370110 GAPVD1Q14C86 1478 aa33.21■■■□□ 2.91
NPM3-201ENST00000370110 ABCA5Q8WWZ7 1642 aa33.17■■■□□ 2.9
NPM3-201ENST00000370110 ABCA10Q8WWZ4 1543 aa33.16■■■□□ 2.9
NPM3-201ENST00000370110 WRNQ14191 1432 aaPredicted RBP eCLIP32.95■■■□□ 2.87
NPM3-201ENST00000370110 GRIN2AQ12879 1464 aa32.94■■■□□ 2.86
NPM3-201ENST00000370110 ADAMTS12P58397 1594 aa32.93■■■□□ 2.86
NPM3-201ENST00000370110 BIVM-ERCC5R4GMW8 1640 aa32.92■■■□□ 2.86
NPM3-201ENST00000370110 ERCC6L2Q5T890 1561 aa32.92■■■□□ 2.86
NPM3-201ENST00000370110 TOP2BQ02880 1626 aa32.91■■■□□ 2.86
NPM3-201ENST00000370110 CEP170Q5SW79 1584 aa32.87■■■□□ 2.85
NPM3-201ENST00000370110 NUP160Q12769 1436 aa32.85■■■□□ 2.85
NPM3-201ENST00000370110 FHAD1B1AJZ9 1412 aa32.77■■■□□ 2.84
NPM3-201ENST00000370110 SHROOM2Q13796 1616 aa32.73■■■□□ 2.83
NPM3-201ENST00000370110 ERICH3Q5RHP9 1530 aa32.72■■■□□ 2.83
NPM3-201ENST00000370110 PRG4Q92954 1404 aaPredicted RBP32.52■■■□□ 2.8
NPM3-201ENST00000370110 RUSC2Q8N2Y8 1516 aa32.47■■■□□ 2.79
NPM3-201ENST00000370110 JPH4Q96JJ6 628 aa32.45■■■□□ 2.79
NPM3-201ENST00000370110 KIF13AQ9H1H9 1805 aa32.4■■■□□ 2.78
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms