RNA–Protein interactions for RNA: ENST00000503427.5

HMGXB3-202, Transcript of HMG-box containing 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene HMGXB3, Length 5,275 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB3-202ENST00000503427 NISCHQ9Y2I1 1504 aa28.29■■■□□ 2.12
HMGXB3-202ENST00000503427 DCAF8L2P0C7V8 631 aa28.18■■■□□ 2.1
HMGXB3-202ENST00000503427 SUPT5HO00267 1087 aaKnown RBP26.72■■□□□ 1.87
HMGXB3-202ENST00000503427 SHROOM4Q9ULL8 1493 aa26.46■■□□□ 1.83
HMGXB3-202ENST00000503427 EHMT2Q96KQ7 1210 aa25.44■■□□□ 1.66
HMGXB3-202ENST00000503427 PELP1Q8IZL8 1130 aaKnown RBP25.32■■□□□ 1.64
HMGXB3-202ENST00000503427 APLP2Q06481 763 aa25.22■■□□□ 1.63
HMGXB3-202ENST00000503427 FAM9AQ8IZU1 332 aaPredicted RBP25.08■■□□□ 1.6
HMGXB3-202ENST00000503427 PCGF6Q9BYE7 350 aa25.06■■□□□ 1.6
HMGXB3-202ENST00000503427 TRIM41Q8WV44 630 aa24.92■■□□□ 1.58
HMGXB3-202ENST00000503427 ZEB1P37275 1124 aaPredicted RBP24.8■■□□□ 1.56
HMGXB3-202ENST00000503427 TTBK1Q5TCY1 1321 aaPredicted RBP24.66■■□□□ 1.54
HMGXB3-202ENST00000503427 CENPBP07199 599 aaPredicted RBP24.63■■□□□ 1.53
HMGXB3-202ENST00000503427 CCER1Q8TC90 406 aaPredicted RBP24.52■■□□□ 1.52
HMGXB3-202ENST00000503427 UBTFP17480 764 aaKnown RBP24.49■■□□□ 1.51
HMGXB3-202ENST00000503427 RANGAP1P46060 587 aaPredicted RBP24.49■■□□□ 1.51
HMGXB3-202ENST00000503427 ATP1B4Q9UN42 357 aaPredicted RBP24.31■■□□□ 1.48
HMGXB3-202ENST00000503427 ABCC9O60706 1549 aa24.17■■□□□ 1.46
HMGXB3-202ENST00000503427 ERICH6Q7L0X2 663 aa24.16■■□□□ 1.46
HMGXB3-202ENST00000503427 TRIM26Q12899 539 aaPredicted RBP24.12■■□□□ 1.45
HMGXB3-202ENST00000503427 CHIC1Q5VXU3 224 aa24.03■■□□□ 1.44
HMGXB3-202ENST00000503427 HRCP23327 699 aa24.01■■□□□ 1.43
HMGXB3-202ENST00000503427 NEFLP07196 543 aa23.96■■□□□ 1.43
HMGXB3-202ENST00000503427 YTHDC1Q96MU7 727 aaKnown RBP23.93■■□□□ 1.42
HMGXB3-202ENST00000503427 MYT1Q01538 1121 aa23.93■■□□□ 1.42
HMGXB3-202ENST00000503427 PPARGC1BQ86YN6 1023 aaKnown RBP23.89■■□□□ 1.41
HMGXB3-202ENST00000503427 PABPN1Q86U42 306 aaKnown RBP eCLIP23.84■■□□□ 1.412e-8■■■■□ 22.7
HMGXB3-202ENST00000503427 LOC105371045A0A1W2PR82 267 aa23.75■■□□□ 1.39
HMGXB3-202ENST00000503427 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.59■■□□□ 1.37
HMGXB3-202ENST00000503427 HNRNPUL2Q1KMD3 747 aaKnown RBP23.59■■□□□ 1.37
HMGXB3-202ENST00000503427 ITGAEP38570 1179 aa23.49■■□□□ 1.35
HMGXB3-202ENST00000503427 ZCCHC6Q5VYS8 1495 aaKnown RBP23.46■■□□□ 1.35
HMGXB3-202ENST00000503427 CCDC180Q9P1Z9 1646 aa23.43■■□□□ 1.34
HMGXB3-202ENST00000503427 MYT1LQ9UL68 1186 aa23.35■■□□□ 1.33
HMGXB3-202ENST00000503427 DIEXFQ68CQ4 756 aaKnown RBP23.25■■□□□ 1.31
HMGXB3-202ENST00000503427 SCRIBQ14160 1630 aa23.22■■□□□ 1.31
HMGXB3-202ENST00000503427 POLR3GLQ9BT43 218 aa23.16■■□□□ 1.3
HMGXB3-202ENST00000503427 DAXXQ9UER7 740 aaPredicted RBP23.13■■□□□ 1.29
HMGXB3-202ENST00000503427 FAM50AQ14320 339 aaKnown RBP23.08■■□□□ 1.28
HMGXB3-202ENST00000503427 CSRNP3Q8WYN3 585 aa23.04■■□□□ 1.28
HMGXB3-202ENST00000503427 FBLN2P98095 1184 aa22.91■■□□□ 1.26
HMGXB3-202ENST00000503427 CNGB1Q14028 1251 aaPredicted RBP22.89■■□□□ 1.26
HMGXB3-202ENST00000503427 RB1CC1Q8TDY2 1594 aa22.88■■□□□ 1.25
HMGXB3-202ENST00000503427 TRIM52Q96A61 297 aa22.88■■□□□ 1.25
HMGXB3-202ENST00000503427 GTF3C3Q9Y5Q9 886 aa22.81■■□□□ 1.24
HMGXB3-202ENST00000503427 ZNF316A6NFI3 1004 aaPredicted RBP22.74■■□□□ 1.23
HMGXB3-202ENST00000503427 RTL5Q5HYW3 569 aaPredicted RBP22.74■■□□□ 1.23
HMGXB3-202ENST00000503427 NEUROD1Q13562 356 aa22.73■■□□□ 1.23
HMGXB3-202ENST00000503427 NACADO15069 1562 aa22.73■■□□□ 1.23
HMGXB3-202ENST00000503427 P3H3Q8IVL6 736 aa22.7■■□□□ 1.23
HMGXB3-202ENST00000503427 ANP32CO43423 234 aa22.67■■□□□ 1.22
HMGXB3-202ENST00000503427 CDK11AQ9UQ88 783 aaPredicted RBP22.63■■□□□ 1.21
HMGXB3-202ENST00000503427 CLSPNQ9HAW4 1339 aa22.61■■□□□ 1.21
HMGXB3-202ENST00000503427 SLC4A1APQ9BWU0 796 aaKnown RBP22.61■■□□□ 1.21
HMGXB3-202ENST00000503427 ACIN1Q9UKV3 1341 aaKnown RBP22.58■■□□□ 1.2
HMGXB3-202ENST00000503427 BCANQ96GW7 911 aa22.58■■□□□ 1.2
HMGXB3-202ENST00000503427 RSF1Q96T23 1441 aaPredicted RBP22.55■■□□□ 1.2
HMGXB3-202ENST00000503427 DCAF1Q9Y4B6 1507 aa22.51■■□□□ 1.19
HMGXB3-202ENST00000503427 ARID3CA6NKF2 412 aa22.5■■□□□ 1.19
HMGXB3-202ENST00000503427 ZNF326Q5BKZ1 582 aaKnown RBP22.47■■□□□ 1.19
HMGXB3-202ENST00000503427 ZNF777Q9ULD5 760 aaPredicted RBP22.41■■□□□ 1.18
HMGXB3-202ENST00000503427 EEA1Q15075 1411 aa22.37■■□□□ 1.17
HMGXB3-202ENST00000503427 BAZ1BQ9UIG0 1483 aaKnown RBP22.34■■□□□ 1.17
HMGXB3-202ENST00000503427 BAZ1AQ9NRL2 1556 aaPredicted RBP22.28■■□□□ 1.16
HMGXB3-202ENST00000503427 CLIP1P30622 1438 aa22.24■■□□□ 1.15
HMGXB3-202ENST00000503427 WRNQ14191 1432 aaPredicted RBP eCLIP22.24■■□□□ 1.15
HMGXB3-202ENST00000503427 NPM1P06748 294 aaKnown RBP eCLIP22.23■■□□□ 1.15
HMGXB3-202ENST00000503427 CHMP7Q8WUX9 453 aaPredicted RBP22.2■■□□□ 1.14
HMGXB3-202ENST00000503427 GOLGA3Q08378 1498 aa22.19■■□□□ 1.14
HMGXB3-202ENST00000503427 TONSLQ96HA7 1378 aa22.18■■□□□ 1.14
HMGXB3-202ENST00000503427 MTUS2Q5JR59 1369 aa22.16■■□□□ 1.14
HMGXB3-202ENST00000503427 ZBTB47Q9UFB7 747 aaPredicted RBP22.13■■□□□ 1.13
HMGXB3-202ENST00000503427 ANP32AP39687 249 aaKnown RBP22.12■■□□□ 1.13
HMGXB3-202ENST00000503427 CANXP27824 592 aaKnown RBP22.1■■□□□ 1.13
HMGXB3-202ENST00000503427 KIF27Q86VH2 1401 aa22.1■■□□□ 1.13
HMGXB3-202ENST00000503427 CECR2Q9BXF3 1484 aa22.08■■□□□ 1.12
HMGXB3-202ENST00000503427 FKBP8Q14318 412 aa22.07■■□□□ 1.12
HMGXB3-202ENST00000503427 ESF1Q9H501 851 aaKnown RBP22.07■■□□□ 1.12
HMGXB3-202ENST00000503427 CEP162Q5TB80 1403 aa22.06■■□□□ 1.12
HMGXB3-202ENST00000503427 TSPY4P0CV99 314 aa22.05■■□□□ 1.12
HMGXB3-202ENST00000503427 TSPY10P0CW01 314 aa22.05■■□□□ 1.12
HMGXB3-202ENST00000503427 CHIC2Q9UKJ5 165 aa22.02■■□□□ 1.12
HMGXB3-202ENST00000503427 CEP164Q9UPV0 1460 aa22.02■■□□□ 1.12
HMGXB3-202ENST00000503427 NEFMP07197 916 aa22.01■■□□□ 1.11
HMGXB3-202ENST00000503427 TNIKQ9UKE5 1360 aa22■■□□□ 1.11
HMGXB3-202ENST00000503427 DDX10Q13206 875 aaKnown RBP22■■□□□ 1.11
HMGXB3-202ENST00000503427 MYO15BQ96JP2 1530 aa21.99■■□□□ 1.11
HMGXB3-202ENST00000503427 HNRNPUQ00839 825 aaKnown RBP eCLIP21.98■■□□□ 1.11
HMGXB3-202ENST00000503427 CHGAP10645 457 aaKnown RBP21.93■■□□□ 1.1
HMGXB3-202ENST00000503427 STAG3Q9UJ98 1225 aa21.92■■□□□ 1.1
HMGXB3-202ENST00000503427 PLPPR3Q6T4P5 718 aa21.91■■□□□ 1.1
HMGXB3-202ENST00000503427 ERCC6Q03468 1493 aa21.9■■□□□ 1.1
HMGXB3-202ENST00000503427 NPM2Q86SE8 214 aaKnown RBP21.89■■□□□ 1.09
HMGXB3-202ENST00000503427 PLEKHD1A6NEE1 506 aa21.88■■□□□ 1.09
HMGXB3-202ENST00000503427 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.88■■□□□ 1.093e-7■□□□□ 9.5
HMGXB3-202ENST00000503427 FAM9BQ8IZU0 186 aa21.86■■□□□ 1.09
HMGXB3-202ENST00000503427 MROH2BQ7Z745 1585 aa21.84■■□□□ 1.09
HMGXB3-202ENST00000503427 SCAF1Q9H7N4 1312 aaKnown RBP21.84■■□□□ 1.09
HMGXB3-202ENST00000503427 MIER1Q8N108 512 aa21.82■■□□□ 1.08
HMGXB3-202ENST00000503427 SMARCA2P51531 1590 aa21.81■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms