RNA–Protein interactions for RNA: ENST00000320081.9

CLIP4-201, Transcript of CAP-Gly domain containing linker protein family member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP4, Length 4,293 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4-201ENST00000320081 DCAF8L2P0C7V8 631 aa29.37■■■□□ 2.29
CLIP4-201ENST00000320081 NISCHQ9Y2I1 1504 aa28.78■■■□□ 2.2
CLIP4-201ENST00000320081 SUPT5HO00267 1087 aaKnown RBP28.42■■■□□ 2.14
CLIP4-201ENST00000320081 SHROOM4Q9ULL8 1493 aa28.21■■■□□ 2.11
CLIP4-201ENST00000320081 EHMT2Q96KQ7 1210 aa27.61■■■□□ 2.01
CLIP4-201ENST00000320081 FAM9AQ8IZU1 332 aaPredicted RBP26.82■■□□□ 1.88
CLIP4-201ENST00000320081 PCGF6Q9BYE7 350 aa26.69■■□□□ 1.86
CLIP4-201ENST00000320081 TTBK1Q5TCY1 1321 aaPredicted RBP26.59■■□□□ 1.85
CLIP4-201ENST00000320081 RANGAP1P46060 587 aaPredicted RBP26.08■■□□□ 1.77
CLIP4-201ENST00000320081 PPARGC1BQ86YN6 1023 aaKnown RBP26.03■■□□□ 1.76
CLIP4-201ENST00000320081 TRIM41Q8WV44 630 aa25.94■■□□□ 1.74
CLIP4-201ENST00000320081 LOC105371045A0A1W2PR82 267 aa25.84■■□□□ 1.73
CLIP4-201ENST00000320081 APLP2Q06481 763 aa25.66■■□□□ 1.7
CLIP4-201ENST00000320081 CHIC1Q5VXU3 224 aa25.6■■□□□ 1.69
CLIP4-201ENST00000320081 CCER1Q8TC90 406 aaPredicted RBP25.56■■□□□ 1.68
CLIP4-201ENST00000320081 UBTFP17480 764 aaKnown RBP25.46■■□□□ 1.67
CLIP4-201ENST00000320081 HRCP23327 699 aa25.3■■□□□ 1.64
CLIP4-201ENST00000320081 ATP1B4Q9UN42 357 aaPredicted RBP25.29■■□□□ 1.64
CLIP4-201ENST00000320081 YTHDC1Q96MU7 727 aaKnown RBP25.26■■□□□ 1.63
CLIP4-201ENST00000320081 TRIM26Q12899 539 aaPredicted RBP25.15■■□□□ 1.62
CLIP4-201ENST00000320081 ZEB1P37275 1124 aaPredicted RBP25.05■■□□□ 1.6
CLIP4-201ENST00000320081 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.92■■□□□ 1.58
CLIP4-201ENST00000320081 ITGAEP38570 1179 aa24.92■■□□□ 1.58
CLIP4-201ENST00000320081 CENPBP07199 599 aaPredicted RBP24.91■■□□□ 1.58
CLIP4-201ENST00000320081 HNRNPUL2Q1KMD3 747 aaKnown RBP24.89■■□□□ 1.58
CLIP4-201ENST00000320081 PELP1Q8IZL8 1130 aaKnown RBP24.75■■□□□ 1.55
CLIP4-201ENST00000320081 PABPN1Q86U42 306 aaKnown RBP eCLIP24.69■■□□□ 1.54
CLIP4-201ENST00000320081 ABCC9O60706 1549 aa24.62■■□□□ 1.53
CLIP4-201ENST00000320081 CNGB1Q14028 1251 aaPredicted RBP24.5■■□□□ 1.51
CLIP4-201ENST00000320081 DIEXFQ68CQ4 756 aaKnown RBP24.32■■□□□ 1.48
CLIP4-201ENST00000320081 POLR3GLQ9BT43 218 aa24.25■■□□□ 1.47
CLIP4-201ENST00000320081 NEFLP07196 543 aa24.13■■□□□ 1.45
CLIP4-201ENST00000320081 ERICH6Q7L0X2 663 aa24.1■■□□□ 1.45
CLIP4-201ENST00000320081 FAM50AQ14320 339 aaKnown RBP24.03■■□□□ 1.44
CLIP4-201ENST00000320081 MYO15BQ96JP2 1530 aa24.03■■□□□ 1.44
CLIP4-201ENST00000320081 NEUROD1Q13562 356 aa24.01■■□□□ 1.43
CLIP4-201ENST00000320081 GTF3C3Q9Y5Q9 886 aa24.01■■□□□ 1.43
CLIP4-201ENST00000320081 P3H3Q8IVL6 736 aa23.94■■□□□ 1.42
CLIP4-201ENST00000320081 BCANQ96GW7 911 aa23.9■■□□□ 1.42
CLIP4-201ENST00000320081 ZCCHC6Q5VYS8 1495 aaKnown RBP23.87■■□□□ 1.41
CLIP4-201ENST00000320081 ARID3CA6NKF2 412 aa23.87■■□□□ 1.41
CLIP4-201ENST00000320081 CSRNP3Q8WYN3 585 aa23.86■■□□□ 1.41
CLIP4-201ENST00000320081 SCRIBQ14160 1630 aa23.78■■□□□ 1.4
CLIP4-201ENST00000320081 MYT1LQ9UL68 1186 aa23.75■■□□□ 1.39
CLIP4-201ENST00000320081 MYT1Q01538 1121 aa23.7■■□□□ 1.38
CLIP4-201ENST00000320081 ZNF316A6NFI3 1004 aaPredicted RBP23.69■■□□□ 1.38
CLIP4-201ENST00000320081 TRIM52Q96A61 297 aa23.68■■□□□ 1.38
CLIP4-201ENST00000320081 SCAF1Q9H7N4 1312 aaKnown RBP23.64■■□□□ 1.38
CLIP4-201ENST00000320081 ZNF326Q5BKZ1 582 aaKnown RBP23.61■■□□□ 1.37
CLIP4-201ENST00000320081 ACIN1Q9UKV3 1341 aaKnown RBP23.59■■□□□ 1.37
CLIP4-201ENST00000320081 FBLN2P98095 1184 aa23.52■■□□□ 1.36
CLIP4-201ENST00000320081 DCAF1Q9Y4B6 1507 aa23.47■■□□□ 1.35
CLIP4-201ENST00000320081 HIRIP3Q9BW71 556 aaPredicted RBP23.42■■□□□ 1.34
CLIP4-201ENST00000320081 SLC4A1APQ9BWU0 796 aaKnown RBP23.38■■□□□ 1.33
CLIP4-201ENST00000320081 RSF1Q96T23 1441 aaPredicted RBP23.37■■□□□ 1.33
CLIP4-201ENST00000320081 DDX10Q13206 875 aaKnown RBP23.3■■□□□ 1.32
CLIP4-201ENST00000320081 MIER1Q8N108 512 aa23.3■■□□□ 1.32
CLIP4-201ENST00000320081 ANP32CO43423 234 aa23.29■■□□□ 1.32
CLIP4-201ENST00000320081 ZNF777Q9ULD5 760 aaPredicted RBP23.24■■□□□ 1.31
CLIP4-201ENST00000320081 CHIC2Q9UKJ5 165 aa23.21■■□□□ 1.31
CLIP4-201ENST00000320081 SENP3-EIF4A1A0A087X0R7 540 aa23.14■■□□□ 1.29
CLIP4-201ENST00000320081 CECR2Q9BXF3 1484 aa23.1■■□□□ 1.29
CLIP4-201ENST00000320081 FKBP8Q14318 412 aa23.1■■□□□ 1.29
CLIP4-201ENST00000320081 DAXXQ9UER7 740 aaPredicted RBP23.07■■□□□ 1.28
CLIP4-201ENST00000320081 SALL2Q9Y467 1007 aaPredicted RBP23.03■■□□□ 1.28
CLIP4-201ENST00000320081 CEP162Q5TB80 1403 aa23.02■■□□□ 1.28
CLIP4-201ENST00000320081 BCL11AQ9H165 835 aa23.01■■□□□ 1.27
CLIP4-201ENST00000320081 CLIP1P30622 1438 aa23.01■■□□□ 1.27
CLIP4-201ENST00000320081 CLSPNQ9HAW4 1339 aa23■■□□□ 1.27
CLIP4-201ENST00000320081 IRX6P78412 446 aaPredicted RBP23■■□□□ 1.27
CLIP4-201ENST00000320081 HNRNPUQ00839 825 aaKnown RBP eCLIP22.98■■□□□ 1.27
CLIP4-201ENST00000320081 FAM9BQ8IZU0 186 aa22.98■■□□□ 1.27
CLIP4-201ENST00000320081 CCDC180Q9P1Z9 1646 aa22.96■■□□□ 1.27
CLIP4-201ENST00000320081 TONSLQ96HA7 1378 aa22.91■■□□□ 1.26
CLIP4-201ENST00000320081 CDK11AQ9UQ88 783 aaPredicted RBP22.88■■□□□ 1.25
CLIP4-201ENST00000320081 SOGA1O94964 1423 aa22.87■■□□□ 1.25
CLIP4-201ENST00000320081 RRP7BPQ9NSQ0 103 aa22.87■■□□□ 1.25
CLIP4-201ENST00000320081 SIN3AQ96ST3 1273 aa22.82■■□□□ 1.24
CLIP4-201ENST00000320081 RTL5Q5HYW3 569 aaPredicted RBP22.79■■□□□ 1.24
CLIP4-201ENST00000320081 SENP3Q9H4L4 574 aaPredicted RBP22.79■■□□□ 1.24
CLIP4-201ENST00000320081 KDM2AQ9Y2K7 1162 aa22.78■■□□□ 1.24
CLIP4-201ENST00000320081 NPM2Q86SE8 214 aaKnown RBP22.78■■□□□ 1.24
CLIP4-201ENST00000320081 WRNQ14191 1432 aaPredicted RBP eCLIP22.78■■□□□ 1.24
CLIP4-201ENST00000320081 RB1CC1Q8TDY2 1594 aa22.76■■□□□ 1.23
CLIP4-201ENST00000320081 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.75■■□□□ 1.23
CLIP4-201ENST00000320081 MTUS2Q5JR59 1369 aa22.69■■□□□ 1.22
CLIP4-201ENST00000320081 GOLGA3Q08378 1498 aa22.66■■□□□ 1.22
CLIP4-201ENST00000320081 TNIKQ9UKE5 1360 aa22.65■■□□□ 1.22
CLIP4-201ENST00000320081 MRS2Q9HD23 443 aa22.64■■□□□ 1.21
CLIP4-201ENST00000320081 MROH2BQ7Z745 1585 aa22.64■■□□□ 1.21
CLIP4-201ENST00000320081 ABCC8Q09428 1581 aa22.64■■□□□ 1.21
CLIP4-201ENST00000320081 CHGAP10645 457 aaKnown RBP22.63■■□□□ 1.21
CLIP4-201ENST00000320081 KANK4Q5T7N3 995 aaPredicted RBP22.62■■□□□ 1.21
CLIP4-201ENST00000320081 CCDC88BA6NC98 1476 aa22.6■■□□□ 1.21
CLIP4-201ENST00000320081 CANXP27824 592 aaKnown RBP22.52■■□□□ 1.2
CLIP4-201ENST00000320081 RGL3Q3MIN7 710 aa22.52■■□□□ 1.2
CLIP4-201ENST00000320081 TMC1Q8TDI8 760 aa22.52■■□□□ 1.2
CLIP4-201ENST00000320081 PLPPR3Q6T4P5 718 aa22.49■■□□□ 1.19
CLIP4-201ENST00000320081 BAZ1BQ9UIG0 1483 aaKnown RBP22.49■■□□□ 1.19
CLIP4-201ENST00000320081 SLC24A1O60721 1099 aa22.48■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms