RNA–Protein interactions for RNA: ENST00000616074.4

TRAPPC3-208, Transcript of trafficking protein particle complex 3, humanhuman

TSL 5 BASIC

Gene TRAPPC3, Length 1,114 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC3-208ENST00000616074 NISCHQ9Y2I1 1504 aa52.16■■■■■ 5.94
TRAPPC3-208ENST00000616074 CCDC180Q9P1Z9 1646 aa46.83■■■■■ 5.09
TRAPPC3-208ENST00000616074 ABCC9O60706 1549 aa46.73■■■■■ 5.07
TRAPPC3-208ENST00000616074 RB1CC1Q8TDY2 1594 aa44.51■■■■■ 4.72
TRAPPC3-208ENST00000616074 NACADO15069 1562 aa44.21■■■■■ 4.67
TRAPPC3-208ENST00000616074 DCAF8L2P0C7V8 631 aa43.93■■■■■ 4.62
TRAPPC3-208ENST00000616074 DNAJC5BQ9UF47 199 aa43.76■■■■■ 4.6
TRAPPC3-208ENST00000616074 MYO15BQ96JP2 1530 aa43.61■■■■■ 4.57
TRAPPC3-208ENST00000616074 UNC13AQ9UPW8 1703 aa43.59■■■■■ 4.57
TRAPPC3-208ENST00000616074 PABPN1Q86U42 306 aaKnown RBP eCLIP43.48■■■■■ 4.55
TRAPPC3-208ENST00000616074 ZCCHC6Q5VYS8 1495 aaKnown RBP43.26■■■■■ 4.52
TRAPPC3-208ENST00000616074 BICRAQ9NZM4 1560 aa43.24■■■■■ 4.51
TRAPPC3-208ENST00000616074 DCAF1Q9Y4B6 1507 aa43.08■■■■■ 4.49
TRAPPC3-208ENST00000616074 SCRIBQ14160 1630 aa42.68■■■■■ 4.42
TRAPPC3-208ENST00000616074 SHROOM4Q9ULL8 1493 aa42.62■■■■■ 4.41
TRAPPC3-208ENST00000616074 CC2D2AQ9P2K1 1620 aa42.24■■■■■ 4.35
TRAPPC3-208ENST00000616074 EIF4G1Q04637 1599 aaKnown RBP42.16■■■■■ 4.34
TRAPPC3-208ENST00000616074 CECR2Q9BXF3 1484 aa42.08■■■■■ 4.33
TRAPPC3-208ENST00000616074 NCAPD3P42695 1498 aa40.79■■■■■ 4.12
TRAPPC3-208ENST00000616074 SMARCA4P51532 1647 aa40.71■■■■■ 4.11
TRAPPC3-208ENST00000616074 ATAD2BQ9ULI0 1458 aa40.7■■■■■ 4.11
TRAPPC3-208ENST00000616074 SMARCA2P51531 1590 aa40.59■■■■■ 4.09
TRAPPC3-208ENST00000616074 HMGXB3Q12766 1538 aa40.53■■■■■ 4.08
TRAPPC3-208ENST00000616074 BAZ1AQ9NRL2 1556 aaPredicted RBP40.49■■■■■ 4.07
TRAPPC3-208ENST00000616074 ERCC6Q03468 1493 aa40.32■■■■■ 4.05
TRAPPC3-208ENST00000616074 BAZ1BQ9UIG0 1483 aaKnown RBP40.31■■■■■ 4.04
TRAPPC3-208ENST00000616074 PEG3Q9GZU2 1588 aa40.31■■■■■ 4.04
TRAPPC3-208ENST00000616074 CUX2O14529 1486 aa40.24■■■■■ 4.03
TRAPPC3-208ENST00000616074 MROH2BQ7Z745 1585 aa40.21■■■■■ 4.03
TRAPPC3-208ENST00000616074 NESP48681 1621 aa40.17■■■■■ 4.02
TRAPPC3-208ENST00000616074 DNAJC5Q9H3Z4 198 aa40.1■■■■■ 4.01
TRAPPC3-208ENST00000616074 LAMC3Q9Y6N6 1575 aa39.89■■■■□ 3.98
TRAPPC3-208ENST00000616074 THOC2Q8NI27 1593 aaKnown RBP39.79■■■■□ 3.96
TRAPPC3-208ENST00000616074 WIZO95785 1651 aa39.76■■■■□ 3.96
TRAPPC3-208ENST00000616074 KIF21AQ7Z4S6 1674 aa39.71■■■■□ 3.95
TRAPPC3-208ENST00000616074 PDS5BQ9NTI5 1447 aa39.62■■■■□ 3.93
TRAPPC3-208ENST00000616074 CADPSQ9ULU8 1353 aa39.55■■■■□ 3.92
TRAPPC3-208ENST00000616074 RSF1Q96T23 1441 aaPredicted RBP39.37■■■■□ 3.89
TRAPPC3-208ENST00000616074 MRC2Q9UBG0 1479 aa39.3■■■■□ 3.88
TRAPPC3-208ENST00000616074 WDR62O43379 1518 aa39.24■■■■□ 3.87
TRAPPC3-208ENST00000616074 TOP2AP11388 1531 aaKnown RBP39.24■■■■□ 3.87
TRAPPC3-208ENST00000616074 CEP164Q9UPV0 1460 aa39.17■■■■□ 3.86
TRAPPC3-208ENST00000616074 CFTRP13569 1480 aa39.13■■■■□ 3.85
TRAPPC3-208ENST00000616074 FANCD2Q9BXW9 1451 aa39.12■■■■□ 3.85
TRAPPC3-208ENST00000616074 PRDM2Q13029 1718 aa38.83■■■■□ 3.81
TRAPPC3-208ENST00000616074 URB2Q14146 1524 aaKnown RBP38.82■■■■□ 3.8
TRAPPC3-208ENST00000616074 CCDC88BA6NC98 1476 aa38.78■■■■□ 3.8
TRAPPC3-208ENST00000616074 TOPBP1Q92547 1522 aa38.41■■■■□ 3.74
TRAPPC3-208ENST00000616074 TRIM41Q8WV44 630 aa38.38■■■■□ 3.73
TRAPPC3-208ENST00000616074 IFT140Q96RY7 1462 aa38.37■■■■□ 3.73
TRAPPC3-208ENST00000616074 OSCARQ8IYS5 282 aa38.35■■■■□ 3.73
TRAPPC3-208ENST00000616074 ZNF608Q9ULD9 1512 aaPredicted RBP38.33■■■■□ 3.73
TRAPPC3-208ENST00000616074 ABCC8Q09428 1581 aa38.28■■■■□ 3.72
TRAPPC3-208ENST00000616074 DNMBPQ6XZF7 1577 aa38.28■■■■□ 3.72
TRAPPC3-208ENST00000616074 EIF4G3O43432 1585 aaKnown RBP38.15■■■■□ 3.7
TRAPPC3-208ENST00000616074 TARBP1Q13395 1621 aaKnown RBP38.09■■■■□ 3.69
TRAPPC3-208ENST00000616074 POLA1P09884 1462 aaPredicted RBP38.02■■■■□ 3.68
TRAPPC3-208ENST00000616074 AQRO60306 1485 aaKnown RBP eCLIP37.97■■■■□ 3.675e-8■■■■■ 40.7
TRAPPC3-208ENST00000616074 RIMBP3CA6NJZ7 1639 aa37.95■■■■□ 3.67
TRAPPC3-208ENST00000616074 RIMBP3BA6NNM3 1639 aa37.95■■■■□ 3.67
TRAPPC3-208ENST00000616074 RIMBP3Q9UFD9 1639 aa37.95■■■■□ 3.67
TRAPPC3-208ENST00000616074 CHD1O14646 1710 aa37.88■■■■□ 3.65
TRAPPC3-208ENST00000616074 RAD54L2Q9Y4B4 1467 aa37.88■■■■□ 3.65
TRAPPC3-208ENST00000616074 ARHGEF11O15085 1522 aa37.82■■■■□ 3.64
TRAPPC3-208ENST00000616074 SOGA1O94964 1423 aa37.81■■■■□ 3.64
TRAPPC3-208ENST00000616074 FGD5Q6ZNL6 1462 aa37.79■■■■□ 3.64
TRAPPC3-208ENST00000616074 CUX1P39880 1505 aa37.77■■■■□ 3.64
TRAPPC3-208ENST00000616074 TDRD9Q8NDG6 1382 aaKnown RBP37.73■■■■□ 3.63
TRAPPC3-208ENST00000616074 WDR97A6NE52 1622 aa37.69■■■■□ 3.62
TRAPPC3-208ENST00000616074 FBLN2P98095 1184 aa37.67■■■■□ 3.62
TRAPPC3-208ENST00000616074 SUPT5HO00267 1087 aaKnown RBP37.64■■■■□ 3.62
TRAPPC3-208ENST00000616074 SNAPC4Q5SXM2 1469 aa37.6■■■■□ 3.61
TRAPPC3-208ENST00000616074 GRIN2BQ13224 1484 aa37.49■■■■□ 3.59
TRAPPC3-208ENST00000616074 MAGI1Q96QZ7 1491 aaPredicted RBP37.49■■■■□ 3.59
TRAPPC3-208ENST00000616074 CYB5RLQ6IPT4 315 aa37.47■■■■□ 3.59
TRAPPC3-208ENST00000616074 ARAP1Q96P48 1450 aa37.45■■■■□ 3.59
TRAPPC3-208ENST00000616074 PBRM1Q86U86 1689 aa37.43■■■■□ 3.58
TRAPPC3-208ENST00000616074 CLASP1Q7Z460 1538 aa37.41■■■■□ 3.58
TRAPPC3-208ENST00000616074 CHMP7Q8WUX9 453 aaPredicted RBP37.4■■■■□ 3.58
TRAPPC3-208ENST00000616074 SYNJ1O43426 1573 aa37.38■■■■□ 3.57
TRAPPC3-208ENST00000616074 GAPVD1Q14C86 1478 aa37.37■■■■□ 3.57
TRAPPC3-208ENST00000616074 SYNJ2O15056 1496 aa37.36■■■■□ 3.57
TRAPPC3-208ENST00000616074 ABCA10Q8WWZ4 1543 aa37.36■■■■□ 3.57
TRAPPC3-208ENST00000616074 ABCA5Q8WWZ7 1642 aa37.34■■■■□ 3.57
TRAPPC3-208ENST00000616074 BIVM-ERCC5R4GMW8 1640 aa37.21■■■■□ 3.55
TRAPPC3-208ENST00000616074 TOP2BQ02880 1626 aa37.19■■■■□ 3.54
TRAPPC3-208ENST00000616074 WRNQ14191 1432 aaPredicted RBP eCLIP37.19■■■■□ 3.54
TRAPPC3-208ENST00000616074 ADAMTS12P58397 1594 aa37.05■■■■□ 3.52
TRAPPC3-208ENST00000616074 TRHP20396 242 aaPredicted RBP37.03■■■■□ 3.52
TRAPPC3-208ENST00000616074 GRIN2AQ12879 1464 aa37.02■■■■□ 3.52
TRAPPC3-208ENST00000616074 CEP170Q5SW79 1584 aa36.92■■■■□ 3.5
TRAPPC3-208ENST00000616074 FHAD1B1AJZ9 1412 aa36.89■■■■□ 3.5
TRAPPC3-208ENST00000616074 NUP160Q12769 1436 aa36.89■■■■□ 3.5
TRAPPC3-208ENST00000616074 ERICH3Q5RHP9 1530 aa36.89■■■■□ 3.5
TRAPPC3-208ENST00000616074 ERCC6L2Q5T890 1561 aa36.85■■■■□ 3.49
TRAPPC3-208ENST00000616074 SHROOM2Q13796 1616 aa36.76■■■■□ 3.48
TRAPPC3-208ENST00000616074 RUSC2Q8N2Y8 1516 aa36.54■■■■□ 3.44
TRAPPC3-208ENST00000616074 PRG4Q92954 1404 aaPredicted RBP36.51■■■■□ 3.44
TRAPPC3-208ENST00000616074 JPH4Q96JJ6 628 aa36.46■■■■□ 3.43
TRAPPC3-208ENST00000616074 KIF27Q86VH2 1401 aa36.42■■■■□ 3.42
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms