Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 P4HB-217ENST00000573778 688 ntTSL 525.25■■□□□ 1.632e-12■■□□□ 13
YBX3P16989 RPL27A-210ENST00000531978 867 ntTSL 2 BASIC8.56□□□□□ -1.041e-27■■□□□ 13
YBX3P16989 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.51e-6■■□□□ 13
YBX3P16989 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.891e-6■■□□□ 13
YBX3P16989 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.247e-7■■□□□ 13
YBX3P16989 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.037e-7■■□□□ 13
YBX3P16989 MTFR1L-210ENST00000474295 1873 ntTSL 1 (best) BASIC15.74■□□□□ 0.117e-7■■□□□ 13
YBX3P16989 MTFR1L-201ENST00000374300 2053 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.487e-7■■□□□ 13
YBX3P16989 MTFR1L-204ENST00000374307 1868 ntTSL 2 BASIC12.07□□□□□ -0.487e-7■■□□□ 13
YBX3P16989 MTFR1L-214ENST00000497956 2531 ntTSL 29.83□□□□□ -0.847e-7■■□□□ 13
YBX3P16989 MTFR1L-207ENST00000466284 3262 ntTSL 2 BASIC7.42□□□□□ -1.227e-7■■□□□ 13
YBX3P16989 NAPG-203ENST00000580483 1516 ntTSL 315.71■□□□□ 0.112e-8■■□□□ 13
YBX3P16989 NAPG-205ENST00000582472 694 ntTSL 512.11□□□□□ -0.472e-8■■□□□ 13
YBX3P16989 NAPG-202ENST00000580224 1245 ntTSL 211.13□□□□□ -0.632e-8■■□□□ 13
YBX3P16989 NAPG-206ENST00000582978 887 ntTSL 27.09□□□□□ -1.272e-8■■□□□ 13
YBX3P16989 DPP7-211ENST00000485456 968 ntTSL 532.23■■■□□ 2.757e-13■■□□□ 13
YBX3P16989 DPP7-205ENST00000472306 919 ntTSL 530.83■■■□□ 2.537e-13■■□□□ 13
YBX3P16989 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.867e-13■■□□□ 13
YBX3P16989 DPP7-202ENST00000460830 639 ntTSL 226.21■■□□□ 1.797e-13■■□□□ 13
YBX3P16989 DPP7-206ENST00000473532 1144 ntTSL 522.63■■□□□ 1.217e-13■■□□□ 13
YBX3P16989 DPP7-203ENST00000463619 775 ntTSL 319.07■□□□□ 0.647e-13■■□□□ 13
YBX3P16989 USP39-212ENST00000465514 660 ntTSL 314.31□□□□□ -0.126e-7■■□□□ 13
YBX3P16989 PUM2-207ENST00000429419 547 ntTSL 58.94□□□□□ -0.984e-7■■□□□ 13
YBX3P16989 PUM2-205ENST00000420234 562 ntTSL 55.86□□□□□ -1.474e-7■■□□□ 13
YBX3P16989 FXYD5-206ENST00000496493 729 ntTSL 316.31■□□□□ 0.21e-13■■□□□ 13
YBX3P16989 NORAD-201ENST00000565493 5339 ntBASIC16.06■□□□□ 0.161e-8■■□□□ 13
YBX3P16989 GNAS-254ENST00000494081 557 ntTSL 59.2□□□□□ -0.943e-16■■□□□ 13
YBX3P16989 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.41e-6■■□□□ 13
YBX3P16989 ZBTB44-203ENST00000445008 3848 ntTSL 1 (best)14.91□□□□□ -0.021e-6■■□□□ 13
YBX3P16989 ZBTB44-202ENST00000397753 3951 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.291e-6■■□□□ 13
YBX3P16989 ZBTB44-205ENST00000525842 9315 ntAPPRIS P3 TSL 1 (best) BASIC11.1□□□□□ -0.631e-6■■□□□ 13
YBX3P16989 ZBTB44-204ENST00000525623 611 ntTSL 38.54□□□□□ -1.041e-6■■□□□ 13
YBX3P16989 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC6.48□□□□□ -1.371e-6■■□□□ 13
YBX3P16989 ZBTB44-209ENST00000529982 2629 ntTSL 25.12□□□□□ -1.591e-6■■□□□ 13
YBX3P16989 ZBTB44-206ENST00000527478 3085 ntAPPRIS ALT2 TSL 53.98□□□□□ -1.771e-6■■□□□ 13
YBX3P16989 RPS26-203ENST00000552361 623 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.177e-13■■□□□ 13
YBX3P16989 RPS26-201ENST00000356464 1183 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.357e-13■■□□□ 13
YBX3P16989 RPS26-202ENST00000548590 1204 ntTSL 512.69□□□□□ -0.387e-13■■□□□ 13
YBX3P16989 NDUFA11-204ENST00000591341 403 ntTSL 221.65■■□□□ 1.061e-15■■□□□ 13
YBX3P16989 ALAS2-206ENST00000477869 582 ntTSL 515.27■□□□□ 0.043e-13■■□□□ 13
YBX3P16989 UBBP4-201ENST00000583708 689 ntBASIC11.49□□□□□ -0.571e-7■■□□□ 13
YBX3P16989 ACOT13-202ENST00000476436 733 ntTSL 37.59□□□□□ -1.198e-7■■□□□ 13
YBX3P16989 CTSD-210ENST00000637381 374 ntTSL 517.27■□□□□ 0.362e-6■■□□□ 13
YBX3P16989 QARS-242ENST00000635443 1053 ntTSL 515.89■□□□□ 0.131e-14■■□□□ 13
YBX3P16989 USP9X-202ENST00000378308 8371 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.251e-7■■□□□ 12.9
YBX3P16989 USP9X-201ENST00000324545 12401 ntTSL 5 BASIC7.52□□□□□ -1.211e-7■■□□□ 12.9
YBX3P16989 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.754e-7■■□□□ 12.9
YBX3P16989 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC17.85■□□□□ 0.454e-7■■□□□ 12.9
YBX3P16989 AC245033.1-201ENST00000562833 880 ntAPPRIS P1 TSL 3 BASIC13.75□□□□□ -0.211e-323■■□□□ 12.9
YBX3P16989 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC22.84■■□□□ 1.257e-7■■□□□ 12.9
YBX3P16989 GDI2-201ENST00000380127 584 ntTSL 310.8□□□□□ -0.684e-8■■□□□ 12.9
YBX3P16989 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC22.17■■□□□ 1.142e-8■■□□□ 12.9
YBX3P16989 SEH1L-201ENST00000262124 3494 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.32e-8■■□□□ 12.9
YBX3P16989 SEH1L-208ENST00000590843 5206 ntTSL 1 (best)12.18□□□□□ -0.462e-8■■□□□ 12.9
YBX3P16989 LNPK-203ENST00000409660 2028 ntTSL 1 (best)27.46■■□□□ 1.997e-12■■□□□ 12.9
YBX3P16989 LNPK-208ENST00000479012 774 ntTSL 1 (best)10.54□□□□□ -0.727e-12■■□□□ 12.9
YBX3P16989 LNPK-201ENST00000272748 7610 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.097e-12■■□□□ 12.9
YBX3P16989 LNPK-207ENST00000475515 524 ntTSL 47.35□□□□□ -1.237e-12■■□□□ 12.9
YBX3P16989 LNPK-212ENST00000544803 7647 ntTSL 1 (best) BASIC6.91□□□□□ -1.37e-12■■□□□ 12.9
YBX3P16989 LNPK-204ENST00000431754 539 ntTSL 56.09□□□□□ -1.437e-12■■□□□ 12.9
YBX3P16989 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.795e-7■■□□□ 12.9
YBX3P16989 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.735e-7■■□□□ 12.9
YBX3P16989 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.085e-7■■□□□ 12.9
YBX3P16989 CAPN1-208ENST00000527323 3086 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.235e-7■■□□□ 12.9
YBX3P16989 CAPN1-202ENST00000524773 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.295e-7■■□□□ 12.9
YBX3P16989 RFC4-208ENST00000447345 785 ntTSL 215.32■□□□□ 0.044e-7■■□□□ 12.9
YBX3P16989 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC24.04■■□□□ 1.441e-10■■□□□ 12.9
YBX3P16989 CHTOP-206ENST00000495554 2553 ntTSL 215.86■□□□□ 0.131e-10■■□□□ 12.9
YBX3P16989 WIPF3-201ENST00000242140 4184 ntAPPRIS P2 TSL 5 BASIC13.26□□□□□ -0.292e-6■■□□□ 12.9
YBX3P16989 WIPF3-203ENST00000409290 4002 ntAPPRIS P2 TSL 5 BASIC9.47□□□□□ -0.892e-6■■□□□ 12.9
YBX3P16989 CUL3-214ENST00000541548 535 ntTSL 45.51□□□□□ -1.531e-8■■□□□ 12.9
YBX3P16989 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC14.91□□□□□ -0.027e-9■■□□□ 12.9
YBX3P16989 P4HA1-201ENST00000263556 2844 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.257e-9■■□□□ 12.9
YBX3P16989 P4HA1-204ENST00000394890 2844 ntAPPRIS ALT1 TSL 1 (best) BASIC13.46□□□□□ -0.257e-9■■□□□ 12.9
YBX3P16989 P4HA1-202ENST00000307116 2727 ntAPPRIS ALT1 TSL 1 (best) BASIC12.68□□□□□ -0.387e-9■■□□□ 12.9
YBX3P16989 P4HA1-203ENST00000373008 2727 ntAPPRIS ALT1 TSL 1 (best) BASIC12.68□□□□□ -0.387e-9■■□□□ 12.9
YBX3P16989 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC33.67■■■□□ 2.983e-6■■□□□ 12.9
YBX3P16989 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC27.19■■□□□ 1.943e-6■■□□□ 12.9
YBX3P16989 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.833e-6■■□□□ 12.9
YBX3P16989 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC24■■□□□ 1.433e-6■■□□□ 12.9
YBX3P16989 PTPMT1-204ENST00000527079 2272 ntTSL 1 (best)11.03□□□□□ -0.643e-6■■□□□ 12.9
YBX3P16989 ERO1A-206ENST00000556039 1855 ntTSL 533.88■■■■□ 3.017e-10■■□□□ 12.9
YBX3P16989 ERO1A-203ENST00000554019 2094 ntTSL 529.97■■■□□ 2.397e-10■■□□□ 12.9
YBX3P16989 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.327e-10■■□□□ 12.9
YBX3P16989 ERO1A-209ENST00000556769 934 ntTSL 58.03□□□□□ -1.127e-10■■□□□ 12.9
YBX3P16989 ERO1A-208ENST00000556358 951 ntTSL 26.98□□□□□ -1.297e-10■■□□□ 12.9
YBX3P16989 NUP107-213ENST00000545140 516 ntTSL 25.09□□□□□ -1.592e-6■■□□□ 12.9
YBX3P16989 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC32.74■■■□□ 2.833e-6■■□□□ 12.9
YBX3P16989 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC31.56■■■□□ 2.643e-6■■□□□ 12.9
YBX3P16989 SSBP4-203ENST00000593641 900 ntTSL 531.1■■■□□ 2.573e-6■■□□□ 12.9
YBX3P16989 SSBP4-207ENST00000600244 622 ntTSL 225.97■■□□□ 1.753e-6■■□□□ 12.9
YBX3P16989 SSBP4-210ENST00000601444 427 ntTSL 525.83■■□□□ 1.733e-6■■□□□ 12.9
YBX3P16989 SSBP4-212ENST00000601919 492 ntTSL 522.25■■□□□ 1.153e-6■■□□□ 12.9
YBX3P16989 ACAT2-202ENST00000467951 856 ntTSL 320.95■□□□□ 0.943e-7■■□□□ 12.9
YBX3P16989 BCAP29-215ENST00000490060 209 ntTSL 24.59□□□□□ -1.672e-10■■□□□ 12.9
YBX3P16989 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.243e-6■■□□□ 12.9
YBX3P16989 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.133e-6■■□□□ 12.9
YBX3P16989 SEMA4B-204ENST00000558065 3751 ntTSL 1 (best)11.05□□□□□ -0.643e-6■■□□□ 12.9
YBX3P16989 RPL35A-207ENST00000474640 687 ntTSL 28.64□□□□□ -1.037e-36■■□□□ 12.9
YBX3P16989 CTSB-222ENST00000531551 1855 ntTSL 1 (best)21.63■■□□□ 1.051e-9■■□□□ 12.9
Retrieved 100 of 29,075 protein–RNA pairs in 235.3 ms