RNA–Protein interactions for RNA: ENST00000326656.12

PTPMT1-201, Transcript of protein tyrosine phosphatase, mitochondrial 1, humanhuman

TSL 1 (best) BASIC

Gene PTPMT1, Length 928 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPMT1-201ENST00000326656 NISCHQ9Y2I1 1504 aa44.09■■■■■ 4.65
PTPMT1-201ENST00000326656 CCDC180Q9P1Z9 1646 aa39.54■■■■□ 3.92
PTPMT1-201ENST00000326656 ABCC9O60706 1549 aa39.26■■■■□ 3.88
PTPMT1-201ENST00000326656 RB1CC1Q8TDY2 1594 aa37.55■■■■□ 3.6
PTPMT1-201ENST00000326656 NACADO15069 1562 aa37.36■■■■□ 3.57
PTPMT1-201ENST00000326656 DCAF8L2P0C7V8 631 aa37.09■■■■□ 3.53
PTPMT1-201ENST00000326656 DNAJC5BQ9UF47 199 aa37.05■■■■□ 3.52
PTPMT1-201ENST00000326656 MYO15BQ96JP2 1530 aa36.97■■■■□ 3.51
PTPMT1-201ENST00000326656 UNC13AQ9UPW8 1703 aa36.62■■■■□ 3.45
PTPMT1-201ENST00000326656 PABPN1Q86U42 306 aaKnown RBP eCLIP36.58■■■■□ 3.45
PTPMT1-201ENST00000326656 ZCCHC6Q5VYS8 1495 aaKnown RBP36.56■■■■□ 3.44
PTPMT1-201ENST00000326656 DCAF1Q9Y4B6 1507 aa36.52■■■■□ 3.44
PTPMT1-201ENST00000326656 BICRAQ9NZM4 1560 aa36.39■■■■□ 3.42
PTPMT1-201ENST00000326656 SHROOM4Q9ULL8 1493 aa36.06■■■■□ 3.36
PTPMT1-201ENST00000326656 SCRIBQ14160 1630 aa35.9■■■■□ 3.34
PTPMT1-201ENST00000326656 CC2D2AQ9P2K1 1620 aa35.51■■■■□ 3.28
PTPMT1-201ENST00000326656 EIF4G1Q04637 1599 aaKnown RBP35.5■■■■□ 3.27
PTPMT1-201ENST00000326656 CECR2Q9BXF3 1484 aa35.41■■■■□ 3.26
PTPMT1-201ENST00000326656 NCAPD3P42695 1498 aa34.5■■■■□ 3.11
PTPMT1-201ENST00000326656 ATAD2BQ9ULI0 1458 aa34.35■■■■□ 3.09
PTPMT1-201ENST00000326656 SMARCA4P51532 1647 aa34.33■■■■□ 3.09
PTPMT1-201ENST00000326656 SMARCA2P51531 1590 aa34.31■■■■□ 3.08
PTPMT1-201ENST00000326656 BAZ1AQ9NRL2 1556 aaPredicted RBP34.23■■■■□ 3.07
PTPMT1-201ENST00000326656 DNAJC5Q9H3Z4 198 aa34.23■■■■□ 3.07
PTPMT1-201ENST00000326656 HMGXB3Q12766 1538 aa34.22■■■■□ 3.07
PTPMT1-201ENST00000326656 PEG3Q9GZU2 1588 aa34.07■■■■□ 3.05
PTPMT1-201ENST00000326656 BAZ1BQ9UIG0 1483 aaKnown RBP34.02■■■■□ 3.04
PTPMT1-201ENST00000326656 ERCC6Q03468 1493 aa33.94■■■■□ 3.02
PTPMT1-201ENST00000326656 MROH2BQ7Z745 1585 aa33.92■■■■□ 3.02
PTPMT1-201ENST00000326656 CUX2O14529 1486 aa33.88■■■■□ 3.01
PTPMT1-201ENST00000326656 NESP48681 1621 aa33.75■■■□□ 2.99
PTPMT1-201ENST00000326656 LAMC3Q9Y6N6 1575 aa33.68■■■□□ 2.98
PTPMT1-201ENST00000326656 WIZO95785 1651 aa33.5■■■□□ 2.95
PTPMT1-201ENST00000326656 PDS5BQ9NTI5 1447 aa33.5■■■□□ 2.95
PTPMT1-201ENST00000326656 CADPSQ9ULU8 1353 aa33.44■■■□□ 2.94
PTPMT1-201ENST00000326656 THOC2Q8NI27 1593 aaKnown RBP33.41■■■□□ 2.94
PTPMT1-201ENST00000326656 KIF21AQ7Z4S6 1674 aa33.34■■■□□ 2.93
PTPMT1-201ENST00000326656 RSF1Q96T23 1441 aaPredicted RBP33.32■■■□□ 2.92
PTPMT1-201ENST00000326656 TOP2AP11388 1531 aaKnown RBP33.14■■■□□ 2.9
PTPMT1-201ENST00000326656 MRC2Q9UBG0 1479 aa33.13■■■□□ 2.89
PTPMT1-201ENST00000326656 CFTRP13569 1480 aa33.07■■■□□ 2.88
PTPMT1-201ENST00000326656 WDR62O43379 1518 aa33.05■■■□□ 2.88
PTPMT1-201ENST00000326656 CEP164Q9UPV0 1460 aa33.03■■■□□ 2.88
PTPMT1-201ENST00000326656 FANCD2Q9BXW9 1451 aa33■■■□□ 2.87
PTPMT1-201ENST00000326656 CCDC88BA6NC98 1476 aa32.77■■■□□ 2.84
PTPMT1-201ENST00000326656 PRDM2Q13029 1718 aa32.73■■■□□ 2.83
PTPMT1-201ENST00000326656 URB2Q14146 1524 aaKnown RBP32.69■■■□□ 2.82
PTPMT1-201ENST00000326656 TRIM41Q8WV44 630 aa32.68■■■□□ 2.82
PTPMT1-201ENST00000326656 ABCC8Q09428 1581 aa32.46■■■□□ 2.79
PTPMT1-201ENST00000326656 IFT140Q96RY7 1462 aa32.41■■■□□ 2.78
PTPMT1-201ENST00000326656 OSCARQ8IYS5 282 aa32.4■■■□□ 2.78
PTPMT1-201ENST00000326656 TOPBP1Q92547 1522 aa32.39■■■□□ 2.78
PTPMT1-201ENST00000326656 DNMBPQ6XZF7 1577 aa32.3■■■□□ 2.76
PTPMT1-201ENST00000326656 ZNF608Q9ULD9 1512 aaPredicted RBP32.24■■■□□ 2.75
PTPMT1-201ENST00000326656 TARBP1Q13395 1621 aaKnown RBP32.1■■■□□ 2.73
PTPMT1-201ENST00000326656 EIF4G3O43432 1585 aaKnown RBP32.08■■■□□ 2.73
PTPMT1-201ENST00000326656 POLA1P09884 1462 aaPredicted RBP32.06■■■□□ 2.72
PTPMT1-201ENST00000326656 AQRO60306 1485 aaKnown RBP eCLIP31.99■■■□□ 2.718e-7■■■■□ 24
PTPMT1-201ENST00000326656 SOGA1O94964 1423 aa31.96■■■□□ 2.71
PTPMT1-201ENST00000326656 SUPT5HO00267 1087 aaKnown RBP31.9■■■□□ 2.7
PTPMT1-201ENST00000326656 RAD54L2Q9Y4B4 1467 aa31.9■■■□□ 2.7
PTPMT1-201ENST00000326656 WDR97A6NE52 1622 aa31.88■■■□□ 2.69
PTPMT1-201ENST00000326656 FGD5Q6ZNL6 1462 aa31.87■■■□□ 2.69
PTPMT1-201ENST00000326656 CUX1P39880 1505 aa31.86■■■□□ 2.69
PTPMT1-201ENST00000326656 RIMBP3CA6NJZ7 1639 aa31.84■■■□□ 2.69
PTPMT1-201ENST00000326656 RIMBP3BA6NNM3 1639 aa31.84■■■□□ 2.69
PTPMT1-201ENST00000326656 RIMBP3Q9UFD9 1639 aa31.84■■■□□ 2.69
PTPMT1-201ENST00000326656 TDRD9Q8NDG6 1382 aaKnown RBP31.83■■■□□ 2.69
PTPMT1-201ENST00000326656 CHD1O14646 1710 aa31.81■■■□□ 2.68
PTPMT1-201ENST00000326656 ARHGEF11O15085 1522 aa31.77■■■□□ 2.68
PTPMT1-201ENST00000326656 FBLN2P98095 1184 aa31.76■■■□□ 2.67
PTPMT1-201ENST00000326656 MAGI1Q96QZ7 1491 aaPredicted RBP31.68■■■□□ 2.66
PTPMT1-201ENST00000326656 GRIN2BQ13224 1484 aa31.67■■■□□ 2.66
PTPMT1-201ENST00000326656 SNAPC4Q5SXM2 1469 aa31.65■■■□□ 2.66
PTPMT1-201ENST00000326656 CHMP7Q8WUX9 453 aaPredicted RBP31.62■■■□□ 2.65
PTPMT1-201ENST00000326656 ABCA10Q8WWZ4 1543 aa31.58■■■□□ 2.65
PTPMT1-201ENST00000326656 GAPVD1Q14C86 1478 aa31.57■■■□□ 2.64
PTPMT1-201ENST00000326656 CYB5RLQ6IPT4 315 aa31.55■■■□□ 2.64
PTPMT1-201ENST00000326656 SYNJ2O15056 1496 aa31.54■■■□□ 2.64
PTPMT1-201ENST00000326656 SYNJ1O43426 1573 aa31.51■■■□□ 2.64
PTPMT1-201ENST00000326656 WRNQ14191 1432 aaPredicted RBP eCLIP31.5■■■□□ 2.63
PTPMT1-201ENST00000326656 CLASP1Q7Z460 1538 aa31.49■■■□□ 2.63
PTPMT1-201ENST00000326656 PBRM1Q86U86 1689 aa31.48■■■□□ 2.63
PTPMT1-201ENST00000326656 ABCA5Q8WWZ7 1642 aa31.47■■■□□ 2.63
PTPMT1-201ENST00000326656 ARAP1Q96P48 1450 aa31.45■■■□□ 2.62
PTPMT1-201ENST00000326656 TOP2BQ02880 1626 aa31.44■■■□□ 2.62
PTPMT1-201ENST00000326656 BIVM-ERCC5R4GMW8 1640 aa31.43■■■□□ 2.62
PTPMT1-201ENST00000326656 TRHP20396 242 aaPredicted RBP31.26■■■□□ 2.59
PTPMT1-201ENST00000326656 GRIN2AQ12879 1464 aa31.24■■■□□ 2.59
PTPMT1-201ENST00000326656 ADAMTS12P58397 1594 aa31.21■■■□□ 2.59
PTPMT1-201ENST00000326656 ERICH3Q5RHP9 1530 aa31.2■■■□□ 2.59
PTPMT1-201ENST00000326656 FHAD1B1AJZ9 1412 aa31.2■■■□□ 2.59
PTPMT1-201ENST00000326656 NUP160Q12769 1436 aa31.15■■■□□ 2.58
PTPMT1-201ENST00000326656 CEP170Q5SW79 1584 aa31.07■■■□□ 2.56
PTPMT1-201ENST00000326656 SHROOM2Q13796 1616 aa30.98■■■□□ 2.55
PTPMT1-201ENST00000326656 ERCC6L2Q5T890 1561 aa30.93■■■□□ 2.54
PTPMT1-201ENST00000326656 JPH4Q96JJ6 628 aa30.87■■■□□ 2.53
PTPMT1-201ENST00000326656 KIF27Q86VH2 1401 aa30.87■■■□□ 2.53
PTPMT1-201ENST00000326656 IGF1RP08069 1367 aa30.83■■■□□ 2.53
PTPMT1-201ENST00000326656 PRG4Q92954 1404 aaPredicted RBP30.81■■■□□ 2.52
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms